Wall clock time and date at job start Wed Apr 1 2020 04:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41375 * 126.80544 * 2 1 4 4 C 1.35450 * 103.98779 * 180.02562 * 3 2 1 5 5 C 1.50705 * 126.77526 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.46863 * 90.00125 * 5 4 3 7 7 C 1.46810 * 111.00022 * 45.31143 * 6 5 4 8 8 C 1.53259 * 109.44807 * 189.19533 * 7 6 5 9 9 C 1.53219 * 108.61813 * 304.39649 * 8 7 6 10 10 C 1.52757 * 117.79487 * 266.01859 * 9 8 7 11 11 C 1.52735 * 117.84859 * 197.00615 * 9 8 7 12 12 H 1.08996 * 117.50143 * 215.21961 * 11 9 8 13 13 C 1.50701 * 117.50027 * 0.27561 * 11 9 8 14 14 O 1.21277 * 120.00378 * 359.97438 * 13 11 9 15 15 N 1.34780 * 119.99443 * 179.97438 * 13 11 9 16 16 C 1.46506 * 119.99847 * 179.97438 * 15 13 11 17 17 C 1.53002 * 109.47006 * 179.97438 * 16 15 13 18 18 C 1.50694 * 109.46881 * 180.02562 * 17 16 15 19 19 H 1.08005 * 120.00349 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99875 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00122 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00061 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47273 * 89.99706 * 22 20 18 24 24 H 1.48505 * 109.47313 * 210.00119 * 22 20 18 25 25 H 1.48504 * 109.47208 * 329.99686 * 22 20 18 26 26 C 1.53217 * 114.72884 * 51.42265 * 9 8 7 27 27 C 1.46811 * 110.99684 * 169.99555 * 6 5 4 28 28 O 1.34034 * 106.44531 * 0.02562 * 4 3 2 29 29 N 1.20925 * 111.56886 * 359.97438 * 28 4 3 30 30 H 1.09005 * 109.46758 * 269.97205 * 1 2 3 31 31 H 1.09001 * 109.46799 * 29.97065 * 1 2 3 32 32 H 1.09000 * 109.47005 * 149.97352 * 1 2 3 33 33 H 1.08002 * 128.00212 * 359.97438 * 3 2 1 34 34 H 1.08998 * 109.47074 * 210.00158 * 5 4 3 35 35 H 1.09000 * 109.47098 * 330.00306 * 5 4 3 36 36 H 1.08999 * 109.47453 * 309.18799 * 7 6 5 37 37 H 1.09003 * 109.47929 * 69.20188 * 7 6 5 38 38 H 1.08993 * 109.61578 * 184.65283 * 8 7 6 39 39 H 1.09003 * 109.75270 * 64.21332 * 8 7 6 40 40 H 1.09000 * 117.51268 * 359.63641 * 10 9 8 41 41 H 1.09005 * 117.50695 * 144.66842 * 10 9 8 42 42 H 0.96999 * 120.00105 * 0.02562 * 15 13 11 43 43 H 1.08994 * 109.46961 * 299.99768 * 16 15 13 44 44 H 1.08996 * 109.46936 * 60.00296 * 16 15 13 45 45 H 1.08998 * 109.47266 * 300.00174 * 17 16 15 46 46 H 1.09003 * 109.47151 * 59.99993 * 17 16 15 47 47 H 0.96998 * 119.99760 * 179.97438 * 21 20 18 48 48 H 1.09003 * 109.60665 * 188.83713 * 26 9 8 49 49 H 1.08999 * 109.61685 * 68.32111 * 26 9 8 50 50 H 1.08998 * 109.47944 * 290.79768 * 27 6 5 51 51 H 1.08999 * 109.47393 * 50.82100 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6025 0.6067 -0.0006 5 6 4.9023 1.3695 -0.0014 6 7 5.3253 1.6174 1.3834 7 6 5.1864 0.4060 2.2009 8 6 5.4143 0.7565 3.6754 9 6 6.7829 1.4315 3.8118 10 6 7.9797 0.5504 4.1651 11 6 7.4024 1.5132 5.2055 12 1 7.9848 2.4026 5.4461 13 6 6.6236 0.9164 6.3493 14 8 5.5471 0.3968 6.1442 15 7 7.1234 0.9601 7.6002 16 6 6.3661 0.3804 8.7123 17 6 7.1510 0.5616 10.0131 18 6 6.3722 -0.0352 11.1569 19 1 5.4131 -0.4972 10.9744 20 6 6.8835 0.0093 12.4365 21 7 8.0511 0.5723 12.6589 22 14 5.9186 -0.7311 13.8543 23 1 6.2972 -2.1574 14.0193 24 1 6.2265 0.0106 15.1035 25 1 4.4647 -0.6349 13.5672 26 6 7.0172 2.6048 2.8546 27 6 6.6946 2.1449 1.4287 28 8 3.4537 -0.7254 -0.0015 29 7 2.2868 -1.0424 -0.0010 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3633 -0.8897 -0.5142 33 1 2.0710 2.1742 -0.0004 34 1 5.6658 0.7857 -0.5156 35 1 4.7649 2.3209 -0.5152 36 1 4.1843 -0.0041 2.0755 37 1 5.9234 -0.3323 1.8848 38 1 5.3936 -0.1534 4.2751 39 1 4.6348 1.4376 4.0168 40 1 7.7962 -0.5145 4.3080 41 1 8.9418 0.8063 3.7209 42 1 7.9842 1.3760 7.7643 43 1 5.4022 0.8824 8.7962 44 1 6.2076 -0.6823 8.5290 45 1 8.1147 0.0593 9.9289 46 1 7.3099 1.6242 10.1966 47 1 8.4107 0.6040 13.5592 48 1 8.0592 2.9199 2.9104 49 1 6.3661 3.4352 3.1274 50 1 7.3948 1.3644 1.1313 51 1 6.7811 2.9903 0.7460 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273818142.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:00 Heat of formation + Delta-G solvation = 43.374595 kcal Electronic energy + Delta-G solvation = -30049.964463 eV Core-core repulsion = 25952.998547 eV Total energy + Delta-G solvation = -4096.965916 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.21176 -40.43249 -38.69618 -36.57127 -35.04988 -34.76951 -33.03004 -32.81070 -31.11524 -30.23845 -29.45963 -28.98127 -26.09459 -25.25237 -23.75801 -23.34828 -23.23964 -22.18300 -20.89525 -20.27840 -19.79332 -18.73871 -18.01187 -17.48878 -16.89055 -16.30601 -16.09090 -15.56549 -15.27695 -15.03117 -14.84214 -14.55484 -14.38354 -14.22207 -13.86098 -13.66118 -13.61108 -13.49732 -13.34031 -12.98327 -12.93126 -12.76393 -12.37542 -12.28272 -12.24011 -12.01510 -11.63305 -11.37327 -11.27784 -11.19815 -11.03902 -10.68036 -10.63513 -10.34644 -10.27294 -10.00897 -9.89980 -9.74556 -9.67538 -9.38498 -9.03304 -8.63107 -8.52745 -8.33901 -6.09646 -4.12425 1.13896 1.95282 2.74099 2.81473 3.29303 3.35289 3.39232 3.53962 3.63807 3.87121 3.91667 4.05935 4.40847 4.48453 4.58817 4.65852 4.71270 4.72416 4.80486 4.92507 5.03913 5.06016 5.13855 5.15649 5.21973 5.26968 5.27358 5.30468 5.37635 5.38548 5.46325 5.47923 5.59117 5.61932 5.71700 5.82026 5.84269 5.90935 6.06261 6.20896 6.35203 6.35891 6.52808 6.65357 6.74081 6.77235 6.97694 7.51828 7.61583 7.88667 8.00378 8.05372 8.28012 8.70366 8.93632 9.52381 11.01902 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014150 B = 0.001884 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.341260 B =14859.307498 C =16432.758545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.013 3.987 3 C -0.211 4.211 4 C -0.028 4.028 5 C 0.135 3.865 6 N -0.534 5.534 7 C 0.054 3.946 8 C -0.072 4.072 9 C -0.089 4.089 10 C -0.149 4.149 11 C -0.181 4.181 12 H 0.121 0.879 13 C 0.534 3.466 14 O -0.545 6.545 15 N -0.719 5.719 16 C 0.122 3.878 17 C 0.012 3.988 18 C -0.521 4.521 19 H 0.059 0.941 20 C 0.058 3.942 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C -0.078 4.078 27 C 0.063 3.937 28 O 0.096 5.904 29 N -0.364 5.364 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.172 0.828 34 H 0.058 0.942 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.037 0.963 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.397 0.603 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.022 0.978 46 H 0.022 0.978 47 H 0.262 0.738 48 H 0.072 0.928 49 H 0.078 0.922 50 H 0.039 0.961 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.861 5.682 -30.472 31.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.145 4.145 3 C -0.234 4.234 4 C -0.091 4.091 5 C 0.007 3.993 6 N -0.260 5.260 7 C -0.073 4.073 8 C -0.109 4.109 9 C -0.090 4.090 10 C -0.186 4.186 11 C -0.202 4.202 12 H 0.138 0.862 13 C 0.320 3.680 14 O -0.424 6.424 15 N -0.368 5.368 16 C 0.000 4.000 17 C -0.025 4.025 18 C -0.560 4.560 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.725 3.275 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.116 4.116 27 C -0.065 4.065 28 O 0.030 5.970 29 N -0.069 5.069 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.190 0.810 34 H 0.076 0.924 35 H 0.126 0.874 36 H 0.089 0.911 37 H 0.055 0.945 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.231 0.769 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.040 0.960 46 H 0.040 0.960 47 H 0.071 0.929 48 H 0.090 0.910 49 H 0.097 0.903 50 H 0.058 0.942 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.040 4.365 -30.244 30.970 hybrid contribution 0.530 0.156 0.811 0.981 sum -4.510 4.521 -29.433 30.118 Atomic orbital electron populations 1.20173 0.85913 1.03655 1.03600 1.23647 0.99143 0.88872 1.02877 1.22407 0.90951 1.01150 1.08853 1.24232 0.98281 0.83702 1.02909 1.20595 0.89076 0.98026 0.91584 1.62028 1.24393 1.31592 1.07976 1.22319 1.00824 0.89796 0.94374 1.21382 0.93877 1.02338 0.93312 1.21466 0.95059 0.98706 0.93742 1.23082 0.97710 0.97314 1.00506 1.22344 1.04825 1.02784 0.90286 0.86153 1.19605 0.85720 0.79327 0.83397 1.90627 1.22033 1.45933 1.83844 1.46306 1.23613 1.59399 1.07440 1.21711 0.95334 0.97124 0.85825 1.19323 0.95718 0.97820 0.89647 1.21051 1.05083 1.37938 0.91923 0.92275 1.25001 0.95062 0.95279 0.98994 1.69955 1.17737 1.44101 1.21496 0.86511 0.80385 0.79159 0.81494 1.20556 1.21161 1.19732 1.21228 1.01329 0.96508 0.92497 1.22064 0.87485 0.99260 0.97671 1.84851 1.21717 1.22848 1.67589 1.73863 0.89283 1.24153 1.19611 0.89992 0.90013 0.90620 0.81033 0.92414 0.87378 0.91122 0.94487 0.88488 0.90747 0.88356 0.88098 0.76916 0.92602 0.92656 0.95963 0.95951 0.92855 0.90990 0.90291 0.94245 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.47 36.01 0.38 -0.13 16 2 C 0.01 0.13 7.33 -82.10 -0.60 -0.47 16 3 C -0.21 -1.82 11.06 -39.38 -0.44 -2.25 16 4 C -0.03 -0.25 5.14 -35.30 -0.18 -0.43 16 5 C 0.14 0.92 5.83 -4.97 -0.03 0.89 16 6 N -0.53 -4.61 4.73 -235.89 -1.12 -5.72 16 7 C 0.05 0.59 5.10 -3.74 -0.02 0.57 16 8 C -0.07 -0.93 4.32 -26.48 -0.11 -1.04 16 9 C -0.09 -0.97 2.02 -154.54 -0.31 -1.28 16 10 C -0.15 -1.54 9.62 -26.83 -0.26 -1.80 16 11 C -0.18 -2.20 5.92 -91.88 -0.54 -2.74 16 12 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 13 C 0.53 8.91 7.59 -10.98 -0.08 8.82 16 14 O -0.55 -10.77 13.13 5.56 0.07 -10.70 16 15 N -0.72 -12.58 5.56 -60.29 -0.33 -12.91 16 16 C 0.12 2.62 5.61 -4.04 -0.02 2.60 16 17 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 18 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 19 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 22 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 C -0.08 -0.64 5.87 -26.49 -0.16 -0.79 16 27 C 0.06 0.44 5.45 -3.74 -0.02 0.42 16 28 O 0.10 1.09 10.38 17.19 0.18 1.27 16 29 N -0.36 -4.43 12.07 33.42 0.40 -4.03 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 35 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.87 5.81 -51.93 -0.30 0.57 16 37 H 0.04 0.40 8.12 -51.93 -0.42 -0.03 16 38 H 0.10 1.51 6.00 -51.93 -0.31 1.20 16 39 H 0.07 1.11 8.12 -51.93 -0.42 0.68 16 40 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.40 6.06 8.47 -40.82 -0.35 5.72 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 48 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 49 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.04 0.27 8.12 -51.93 -0.42 -0.15 16 51 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16 LS Contribution 411.70 15.07 6.20 6.20 Total: -1.00 -32.88 411.70 -10.35 -43.23 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -8.52 Total: 2.41 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -2.95 Total: -10.78 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: -0.31 Total: -48.11 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.25 Total: -9.43 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.88 -10.35 -43.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273818142.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.607 kcal (2) G-P(sol) polarization free energy of solvation -32.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds