Wall clock time and date at job start Wed Apr 1 2020 04:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41375 * 126.80544 * 2 1 4 4 C 1.35450 * 103.98779 * 180.02562 * 3 2 1 5 5 C 1.50705 * 126.77526 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.46863 * 90.00125 * 5 4 3 7 7 C 1.46810 * 111.00022 * 45.31143 * 6 5 4 8 8 C 1.53259 * 109.44807 * 189.19533 * 7 6 5 9 9 C 1.53219 * 108.61813 * 304.39649 * 8 7 6 10 10 C 1.52757 * 117.79487 * 266.01859 * 9 8 7 11 11 C 1.52735 * 117.84859 * 197.00615 * 9 8 7 12 12 H 1.08996 * 117.50143 * 215.21961 * 11 9 8 13 13 C 1.50701 * 117.50027 * 0.27561 * 11 9 8 14 14 O 1.21277 * 120.00378 * 359.97438 * 13 11 9 15 15 N 1.34780 * 119.99443 * 179.97438 * 13 11 9 16 16 C 1.46506 * 119.99847 * 179.97438 * 15 13 11 17 17 C 1.53002 * 109.47006 * 179.97438 * 16 15 13 18 18 C 1.50694 * 109.46881 * 180.02562 * 17 16 15 19 19 H 1.08005 * 120.00349 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99875 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00122 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00061 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47273 * 89.99706 * 22 20 18 24 24 H 1.48505 * 109.47313 * 210.00119 * 22 20 18 25 25 H 1.48504 * 109.47208 * 329.99686 * 22 20 18 26 26 C 1.53217 * 114.72884 * 51.42265 * 9 8 7 27 27 C 1.46811 * 110.99684 * 169.99555 * 6 5 4 28 28 O 1.34034 * 106.44531 * 0.02562 * 4 3 2 29 29 N 1.20925 * 111.56886 * 359.97438 * 28 4 3 30 30 H 1.09005 * 109.46758 * 269.97205 * 1 2 3 31 31 H 1.09001 * 109.46799 * 29.97065 * 1 2 3 32 32 H 1.09000 * 109.47005 * 149.97352 * 1 2 3 33 33 H 1.08002 * 128.00212 * 359.97438 * 3 2 1 34 34 H 1.08998 * 109.47074 * 210.00158 * 5 4 3 35 35 H 1.09000 * 109.47098 * 330.00306 * 5 4 3 36 36 H 1.08999 * 109.47453 * 309.18799 * 7 6 5 37 37 H 1.09003 * 109.47929 * 69.20188 * 7 6 5 38 38 H 1.08993 * 109.61578 * 184.65283 * 8 7 6 39 39 H 1.09003 * 109.75270 * 64.21332 * 8 7 6 40 40 H 1.09000 * 117.51268 * 359.63641 * 10 9 8 41 41 H 1.09005 * 117.50695 * 144.66842 * 10 9 8 42 42 H 0.96999 * 120.00105 * 0.02562 * 15 13 11 43 43 H 1.08994 * 109.46961 * 299.99768 * 16 15 13 44 44 H 1.08996 * 109.46936 * 60.00296 * 16 15 13 45 45 H 1.08998 * 109.47266 * 300.00174 * 17 16 15 46 46 H 1.09003 * 109.47151 * 59.99993 * 17 16 15 47 47 H 0.96998 * 119.99760 * 179.97438 * 21 20 18 48 48 H 1.09003 * 109.60665 * 188.83713 * 26 9 8 49 49 H 1.08999 * 109.61685 * 68.32111 * 26 9 8 50 50 H 1.08998 * 109.47944 * 290.79768 * 27 6 5 51 51 H 1.08999 * 109.47393 * 50.82100 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6025 0.6067 -0.0006 5 6 4.9023 1.3695 -0.0014 6 7 5.3253 1.6174 1.3834 7 6 5.1864 0.4060 2.2009 8 6 5.4143 0.7565 3.6754 9 6 6.7829 1.4315 3.8118 10 6 7.9797 0.5504 4.1651 11 6 7.4024 1.5132 5.2055 12 1 7.9848 2.4026 5.4461 13 6 6.6236 0.9164 6.3493 14 8 5.5471 0.3968 6.1442 15 7 7.1234 0.9601 7.6002 16 6 6.3661 0.3804 8.7123 17 6 7.1510 0.5616 10.0131 18 6 6.3722 -0.0352 11.1569 19 1 5.4131 -0.4972 10.9744 20 6 6.8835 0.0093 12.4365 21 7 8.0511 0.5723 12.6589 22 14 5.9186 -0.7311 13.8543 23 1 6.2972 -2.1574 14.0193 24 1 6.2265 0.0106 15.1035 25 1 4.4647 -0.6349 13.5672 26 6 7.0172 2.6048 2.8546 27 6 6.6946 2.1449 1.4287 28 8 3.4537 -0.7254 -0.0015 29 7 2.2868 -1.0424 -0.0010 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3633 -0.8897 -0.5142 33 1 2.0710 2.1742 -0.0004 34 1 5.6658 0.7857 -0.5156 35 1 4.7649 2.3209 -0.5152 36 1 4.1843 -0.0041 2.0755 37 1 5.9234 -0.3323 1.8848 38 1 5.3936 -0.1534 4.2751 39 1 4.6348 1.4376 4.0168 40 1 7.7962 -0.5145 4.3080 41 1 8.9418 0.8063 3.7209 42 1 7.9842 1.3760 7.7643 43 1 5.4022 0.8824 8.7962 44 1 6.2076 -0.6823 8.5290 45 1 8.1147 0.0593 9.9289 46 1 7.3099 1.6242 10.1966 47 1 8.4107 0.6040 13.5592 48 1 8.0592 2.9199 2.9104 49 1 6.3661 3.4352 3.1274 50 1 7.3948 1.3644 1.1313 51 1 6.7811 2.9903 0.7460 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273818142.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:59 Heat of formation + Delta-G solvation = 22.028734 kcal Electronic energy + Delta-G solvation = -30050.890089 eV Core-core repulsion = 25952.998547 eV Total energy + Delta-G solvation = -4097.891542 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.95082 -41.49412 -39.75170 -37.52847 -36.45143 -35.73653 -34.83010 -33.71103 -31.97833 -31.66566 -30.63386 -29.59683 -27.28460 -26.54735 -24.82024 -24.46550 -23.95134 -23.05760 -22.63954 -21.09706 -20.93856 -19.59037 -18.78520 -18.62751 -18.21266 -17.90468 -16.98667 -16.51557 -16.49647 -16.31043 -16.22755 -15.77044 -15.51894 -15.07953 -14.86234 -14.60290 -14.39084 -14.30026 -14.22976 -14.17535 -14.00825 -13.93964 -13.37090 -13.25800 -13.11858 -12.98720 -12.95732 -12.71002 -12.60099 -12.51816 -12.27807 -12.10600 -11.98086 -11.67011 -11.52116 -11.42862 -10.97925 -10.91716 -10.80085 -10.62426 -10.47932 -10.38315 -9.99640 -9.27889 -8.26251 -6.36871 0.43947 1.26258 1.39799 1.40291 1.51821 1.55314 2.12402 2.23302 2.43273 2.81366 3.00486 3.08098 3.29272 3.44824 3.61415 3.69575 3.87129 3.93361 4.02737 4.12806 4.16636 4.29857 4.34016 4.39446 4.45792 4.47839 4.50730 4.57994 4.61249 4.65866 4.67868 4.74703 4.81932 4.84302 4.88722 4.91109 4.95157 4.96507 5.04632 5.11262 5.18827 5.24448 5.29674 5.40730 5.45244 5.54820 5.55501 5.77010 5.97816 6.10488 6.14182 6.66821 6.76038 7.28521 7.32338 7.33722 8.85458 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014150 B = 0.001884 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.341260 B =14859.307498 C =16432.758545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.003 3.997 3 C -0.215 4.215 4 C -0.032 4.032 5 C 0.137 3.863 6 N -0.541 5.541 7 C 0.068 3.932 8 C -0.067 4.067 9 C -0.087 4.087 10 C -0.132 4.132 11 C -0.190 4.190 12 H 0.150 0.850 13 C 0.528 3.472 14 O -0.582 6.582 15 N -0.716 5.716 16 C 0.142 3.858 17 C 0.024 3.976 18 C -0.548 4.548 19 H 0.056 0.944 20 C 0.007 3.993 21 N -0.925 5.925 22 Si 0.965 3.035 23 H -0.272 1.272 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.073 4.073 27 C 0.062 3.938 28 O 0.075 5.925 29 N -0.404 5.404 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.197 0.803 34 H 0.071 0.929 35 H 0.139 0.861 36 H 0.049 0.951 37 H 0.037 0.963 38 H 0.061 0.939 39 H 0.046 0.954 40 H 0.080 0.920 41 H 0.138 0.862 42 H 0.410 0.590 43 H 0.042 0.958 44 H 0.042 0.958 45 H 0.009 0.991 46 H 0.009 0.991 47 H 0.266 0.734 48 H 0.100 0.900 49 H 0.072 0.928 50 H 0.047 0.953 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.871 7.437 -32.209 33.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.155 4.155 3 C -0.237 4.237 4 C -0.095 4.095 5 C 0.010 3.990 6 N -0.267 5.267 7 C -0.060 4.060 8 C -0.105 4.105 9 C -0.088 4.088 10 C -0.169 4.169 11 C -0.211 4.211 12 H 0.168 0.832 13 C 0.316 3.684 14 O -0.463 6.463 15 N -0.367 5.367 16 C 0.019 3.981 17 C -0.014 4.014 18 C -0.587 4.587 19 H 0.075 0.925 20 C -0.192 4.192 21 N -0.564 5.564 22 Si 0.790 3.210 23 H -0.197 1.197 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.110 4.110 27 C -0.065 4.065 28 O 0.012 5.988 29 N -0.112 5.112 30 H 0.102 0.898 31 H 0.125 0.875 32 H 0.094 0.906 33 H 0.214 0.786 34 H 0.089 0.911 35 H 0.157 0.843 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.156 0.844 42 H 0.246 0.754 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.027 0.973 46 H 0.028 0.972 47 H 0.075 0.925 48 H 0.118 0.882 49 H 0.091 0.909 50 H 0.066 0.934 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.011 6.138 -32.005 32.834 hybrid contribution 0.184 -0.389 1.333 1.400 sum -3.827 5.749 -30.672 31.440 Atomic orbital electron populations 1.20309 0.84066 1.04915 1.04053 1.24273 1.00570 0.88968 1.01693 1.22780 0.90543 1.01969 1.08373 1.24785 0.99650 0.83015 1.02064 1.20826 0.88153 0.99358 0.90684 1.62006 1.25967 1.29994 1.08778 1.22025 0.99569 0.90933 0.93471 1.21154 0.94881 1.00207 0.94274 1.21579 0.93885 0.99912 0.93408 1.23189 0.99000 0.96028 0.98684 1.22353 1.05627 1.04252 0.88854 0.83223 1.20477 0.85556 0.78434 0.83898 1.90633 1.23900 1.47404 1.84376 1.46152 1.23922 1.59579 1.07005 1.21170 0.94652 0.96432 0.85895 1.19124 0.95134 0.96408 0.90720 1.21455 1.05442 1.38447 0.93330 0.92546 1.25875 0.96059 0.95561 1.01698 1.70053 1.19057 1.44919 1.22376 0.85445 0.78991 0.78533 0.78078 1.19736 1.20305 1.19217 1.21285 1.02934 0.94666 0.92151 1.22195 0.86357 1.00454 0.97512 1.84793 1.21580 1.24233 1.68219 1.73851 0.89929 1.25709 1.21737 0.89818 0.87484 0.90648 0.78572 0.91124 0.84300 0.93295 0.94455 0.92096 0.93519 0.90178 0.84377 0.75435 0.93917 0.93978 0.97305 0.97248 0.92485 0.88183 0.90918 0.93437 0.87326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.47 71.24 0.75 -0.24 16 2 C 0.00 0.06 7.33 43.58 0.32 0.38 16 3 C -0.21 -3.47 11.06 22.40 0.25 -3.23 16 4 C -0.03 -0.55 5.14 25.04 0.13 -0.42 16 5 C 0.14 1.51 5.83 85.56 0.50 2.01 16 6 N -0.54 -8.18 4.73 -900.21 -4.26 -12.44 16 7 C 0.07 1.49 5.10 86.41 0.44 1.93 16 8 C -0.07 -1.81 4.32 30.75 0.13 -1.68 16 9 C -0.09 -1.76 2.02 -52.20 -0.11 -1.87 16 10 C -0.13 -2.44 9.62 30.53 0.29 -2.15 16 11 C -0.19 -4.32 5.92 -11.61 -0.07 -4.39 16 12 H 0.15 2.55 8.14 -2.39 -0.02 2.53 16 13 C 0.53 17.94 7.59 87.66 0.67 18.61 16 14 O -0.58 -24.24 13.13 -3.02 -0.04 -24.28 16 15 N -0.72 -25.52 5.56 -463.05 -2.57 -28.10 16 16 C 0.14 6.34 5.61 86.38 0.48 6.82 16 17 C 0.02 1.21 5.09 29.85 0.15 1.36 16 18 C -0.55 -31.23 9.11 25.60 0.23 -30.99 16 19 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 20 C 0.01 0.40 5.46 84.65 0.46 0.86 16 21 N -0.92 -54.54 13.29 21.45 0.28 -54.25 16 22 Si 0.97 44.18 29.54 68.60 2.03 46.20 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 C -0.07 -0.93 5.87 30.75 0.18 -0.75 16 27 C 0.06 0.62 5.45 86.41 0.47 1.09 16 28 O 0.07 1.76 10.38 71.69 0.74 2.50 16 29 N -0.40 -10.27 12.07 -49.56 -0.60 -10.86 16 30 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.20 1.98 8.06 -2.91 -0.02 1.96 16 34 H 0.07 0.63 8.08 -2.39 -0.02 0.61 16 35 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.05 1.27 5.81 -2.39 -0.01 1.26 16 37 H 0.04 0.80 8.12 -2.39 -0.02 0.78 16 38 H 0.06 2.06 6.00 -2.39 -0.01 2.05 16 39 H 0.05 1.48 8.12 -2.39 -0.02 1.46 16 40 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.14 1.59 8.14 -2.38 -0.02 1.57 16 42 H 0.41 12.45 8.47 -92.71 -0.79 11.66 16 43 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.04 1.96 8.14 -2.39 -0.02 1.95 16 45 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 48 H 0.10 0.78 8.08 -2.39 -0.02 0.76 16 49 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.05 0.44 8.12 -2.39 -0.02 0.43 16 51 H 0.11 0.53 8.09 -2.39 -0.02 0.51 16 Total: -1.00 -75.28 411.70 1.01 -74.27 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.14 Total: 19.59 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 5.28 Total: -12.64 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -7.14 Total: -105.65 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.70 Total: -21.77 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -75.28 1.01 -74.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273818142.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.297 kcal (2) G-P(sol) polarization free energy of solvation -75.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds