Wall clock time and date at job start Wed Apr 1 2020 04:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.41378 * 126.80383 * 2 1 4 4 C 1.35447 * 103.98783 * 179.97438 * 3 2 1 5 5 C 1.50707 * 126.77906 * 179.97438 * 4 3 2 6 6 N 1.46894 * 109.47065 * 89.99533 * 5 4 3 7 7 C 1.46866 * 110.99831 * 170.00181 * 6 5 4 8 8 C 1.53138 * 109.44691 * 186.35533 * 7 6 5 9 9 C 1.52543 * 109.31923 * 301.72764 * 8 7 6 10 10 C 1.54126 * 110.08411 * 178.11080 * 9 8 7 11 11 C 1.54594 * 101.65077 * 143.30142 * 10 9 8 12 12 N 1.46817 * 105.49553 * 335.01992 * 11 10 9 13 13 C 1.46500 * 124.36211 * 196.92308 * 12 11 10 14 14 C 1.53006 * 109.46998 * 89.99797 * 13 12 11 15 15 C 1.50699 * 109.46866 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00270 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99834 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00496 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.47141 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47494 * 119.99680 * 19 17 15 22 22 H 1.48505 * 109.47047 * 239.99860 * 19 17 15 23 23 C 1.34577 * 111.27702 * 17.18106 * 12 11 10 24 24 O 1.21280 * 125.02866 * 179.02726 * 23 12 11 25 25 C 1.52539 * 110.49347 * 56.31083 * 9 8 7 26 26 C 1.46850 * 111.00081 * 294.35633 * 6 5 4 27 27 O 1.34044 * 106.44757 * 0.23535 * 4 3 2 28 28 N 1.20927 * 111.56350 * 359.57499 * 27 4 3 29 29 H 1.08995 * 109.47688 * 89.99783 * 1 2 3 30 30 H 1.08997 * 109.47252 * 209.99983 * 1 2 3 31 31 H 1.08998 * 109.47006 * 329.99714 * 1 2 3 32 32 H 1.08007 * 128.00571 * 359.96710 * 3 2 1 33 33 H 1.08998 * 109.46388 * 329.99281 * 5 4 3 34 34 H 1.09001 * 109.46694 * 209.99825 * 5 4 3 35 35 H 1.09001 * 109.46993 * 66.36767 * 7 6 5 36 36 H 1.09002 * 109.47366 * 306.35225 * 7 6 5 37 37 H 1.08996 * 109.49962 * 181.77380 * 8 7 6 38 38 H 1.09008 * 109.49598 * 61.68145 * 8 7 6 39 39 H 1.08996 * 110.99463 * 25.21114 * 10 9 8 40 40 H 1.09004 * 110.99313 * 261.38991 * 10 9 8 41 41 H 1.09003 * 110.23944 * 216.01734 * 11 10 9 42 42 H 1.08998 * 110.31512 * 94.06555 * 11 10 9 43 43 H 1.09000 * 109.47175 * 329.99929 * 13 12 11 44 44 H 1.09001 * 109.47297 * 209.99436 * 13 12 11 45 45 H 1.08993 * 109.46955 * 300.00226 * 14 13 12 46 46 H 1.09000 * 109.47050 * 60.00054 * 14 13 12 47 47 H 0.96992 * 120.00032 * 180.02562 * 18 17 15 48 48 H 1.08999 * 109.50194 * 63.66019 * 25 9 8 49 49 H 1.08999 * 109.49741 * 183.75122 * 25 9 8 50 50 H 1.09001 * 109.47315 * 293.64943 * 26 6 5 51 51 H 1.09000 * 109.47653 * 53.65665 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6024 0.6068 0.0006 5 6 4.9022 1.3695 0.0003 6 7 5.3242 1.6184 1.3852 7 6 6.6940 2.1462 1.4312 8 6 7.1544 2.2429 2.8885 9 6 6.1963 3.1433 3.6618 10 6 6.6166 3.2152 5.1429 11 6 6.2925 4.6868 5.4883 12 7 6.3494 5.4109 4.2124 13 6 6.4597 6.8667 4.0921 14 6 7.9366 7.2647 4.0527 15 6 8.0501 8.7624 3.9295 16 1 7.1581 9.3696 3.8835 17 6 9.2926 9.3574 3.8745 18 7 10.3789 8.6180 3.9300 19 14 9.4334 11.2138 3.7226 20 1 8.0745 11.8115 3.6805 21 1 10.1750 11.7514 4.8915 22 1 10.1624 11.5545 2.4745 23 6 6.2815 4.5654 3.1676 24 8 6.2904 4.8979 2.0013 25 6 4.7664 2.6244 3.5477 26 6 4.3835 2.5150 2.0689 27 8 3.4538 -0.7254 -0.0044 28 7 2.2868 -1.0424 0.0006 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 2.0709 2.1743 -0.0005 33 1 4.7652 2.3205 -0.5143 34 1 5.6661 0.7854 -0.5130 35 1 6.7172 3.1365 0.9763 36 1 7.3592 1.4787 0.8833 37 1 8.1591 2.6640 2.9254 38 1 7.1596 1.2485 3.3351 39 1 7.6815 3.0128 5.2569 40 1 6.0236 2.5317 5.7507 41 1 7.0348 5.0839 6.1807 42 1 5.2950 4.7630 5.9211 43 1 5.9788 7.3396 4.9484 44 1 5.9708 7.1936 3.1744 45 1 8.4256 6.9378 4.9703 46 1 8.4176 6.7919 3.1964 47 1 11.2530 9.0366 3.8917 48 1 4.6974 1.6421 4.0150 49 1 4.0878 3.3146 4.0490 50 1 4.4234 3.5026 1.6092 51 1 3.3731 2.1151 1.9837 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273819035.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:35 Heat of formation + Delta-G solvation = 23.982212 kcal Electronic energy + Delta-G solvation = -31352.329099 eV Core-core repulsion = 27254.522265 eV Total energy + Delta-G solvation = -4097.806833 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.08114 -41.04991 -38.15726 -36.12205 -35.07869 -34.80597 -33.27519 -32.13324 -30.99312 -30.40889 -28.92734 -28.56746 -26.88732 -25.18309 -24.16528 -23.49197 -23.11356 -21.86634 -21.28295 -20.25597 -20.10579 -18.30596 -17.81768 -17.35045 -16.70752 -16.20314 -15.81965 -15.45604 -15.33124 -15.06164 -14.63249 -14.49192 -14.29014 -14.08210 -13.67024 -13.52860 -13.39874 -13.31257 -13.25762 -12.88070 -12.67393 -12.62483 -12.44097 -12.28754 -12.08515 -12.01029 -11.81112 -11.49595 -11.30211 -11.22473 -11.11215 -10.98755 -10.70988 -10.44084 -10.34287 -10.17087 -10.02440 -9.90357 -9.62686 -9.34418 -9.10541 -8.41471 -8.33400 -8.04117 -6.06166 -4.09703 1.24703 2.00010 2.88448 2.99817 3.27673 3.34978 3.38620 3.53644 3.79977 3.97050 4.23580 4.36851 4.42202 4.48307 4.62203 4.81404 4.82648 4.92860 5.01681 5.05516 5.14402 5.15585 5.23341 5.26398 5.30081 5.33002 5.39897 5.45645 5.50428 5.56858 5.60210 5.69982 5.73902 5.76647 5.82714 5.86991 5.91271 5.97116 6.00575 6.03842 6.14362 6.26556 6.42795 6.76990 6.82263 6.92357 6.98304 7.48527 7.63548 7.82143 7.93595 8.09470 8.29798 8.65886 8.97246 9.54604 11.05215 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019008 B = 0.002200 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.720521 B =12725.347073 C =13005.053241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.013 3.987 3 C -0.233 4.233 4 C -0.006 4.006 5 C 0.130 3.870 6 N -0.531 5.531 7 C 0.044 3.956 8 C -0.089 4.089 9 C -0.095 4.095 10 C -0.125 4.125 11 C 0.100 3.900 12 N -0.610 5.610 13 C 0.127 3.873 14 C 0.013 3.987 15 C -0.522 4.522 16 H 0.057 0.943 17 C 0.058 3.942 18 N -0.892 5.892 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.523 3.477 24 O -0.530 6.530 25 C -0.089 4.089 26 C 0.045 3.955 27 O 0.105 5.895 28 N -0.369 5.369 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.169 0.831 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.017 0.983 46 H 0.020 0.980 47 H 0.261 0.739 48 H 0.079 0.921 49 H 0.069 0.931 50 H 0.051 0.949 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.107 -18.104 -2.398 23.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.145 4.145 3 C -0.255 4.255 4 C -0.070 4.070 5 C 0.001 3.999 6 N -0.256 5.256 7 C -0.083 4.083 8 C -0.128 4.128 9 C -0.099 4.099 10 C -0.162 4.162 11 C -0.023 4.023 12 N -0.342 5.342 13 C 0.007 3.993 14 C -0.025 4.025 15 C -0.561 4.561 16 H 0.075 0.925 17 C -0.143 4.143 18 N -0.531 5.531 19 Si 0.722 3.278 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.209 1.209 23 C 0.310 3.690 24 O -0.408 6.408 25 C -0.127 4.127 26 C -0.083 4.083 27 O 0.039 5.961 28 N -0.074 5.074 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.186 0.814 33 H 0.091 0.909 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.035 0.965 46 H 0.038 0.962 47 H 0.070 0.930 48 H 0.098 0.902 49 H 0.087 0.913 50 H 0.070 0.930 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.125 -19.568 -2.754 24.885 hybrid contribution 0.170 2.743 -0.298 2.764 sum -14.955 -16.825 -3.052 22.716 Atomic orbital electron populations 1.20149 0.86070 1.03739 1.03275 1.23572 0.98976 0.88888 1.03066 1.22448 0.91327 1.01098 1.10621 1.24360 0.97894 0.83633 1.01135 1.20466 0.90397 0.97444 0.91545 1.61913 1.03082 1.47676 1.12962 1.22326 0.87737 1.00624 0.97623 1.21360 0.97830 0.99162 0.94402 1.21073 0.97709 0.94533 0.96553 1.22681 1.02880 0.96225 0.94451 1.22054 1.01566 0.91524 0.87183 1.48596 1.71397 1.07976 1.06277 1.21794 1.01315 0.74990 1.01161 1.19394 0.89129 0.96330 0.97646 1.21119 0.92369 0.91751 1.50824 0.92466 1.25008 0.95858 0.98333 0.95125 1.69981 0.97626 1.35176 1.50326 0.86499 0.78166 0.85424 0.77685 1.19672 1.20969 1.20936 1.20438 0.75739 0.87452 0.85410 1.90614 1.51159 1.81521 1.17491 1.21361 0.93645 1.01501 0.96195 1.22257 0.95880 0.95624 0.94551 1.84822 1.21377 1.22810 1.67049 1.73852 0.89434 1.24193 1.19932 0.90270 0.90635 0.90046 0.81356 0.90861 0.88216 0.91029 0.90668 0.90773 0.90404 0.89755 0.89436 0.90151 0.91707 0.91727 0.91231 0.96494 0.96157 0.92968 0.90199 0.91258 0.93033 0.90767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.47 36.00 0.38 -0.13 16 2 C 0.01 0.14 7.33 -82.10 -0.60 -0.46 16 3 C -0.23 -2.22 9.55 -39.38 -0.38 -2.60 16 4 C -0.01 -0.06 6.36 -35.30 -0.22 -0.28 16 5 C 0.13 1.24 5.53 -4.98 -0.03 1.22 16 6 N -0.53 -5.85 4.63 -235.96 -1.09 -6.95 16 7 C 0.04 0.52 5.24 -3.77 -0.02 0.50 16 8 C -0.09 -1.06 4.78 -26.89 -0.13 -1.19 16 9 C -0.10 -1.19 0.55 -155.50 -0.09 -1.27 16 10 C -0.12 -1.33 6.21 -25.31 -0.16 -1.49 16 11 C 0.10 1.30 7.35 -3.03 -0.02 1.27 16 12 N -0.61 -10.62 2.94 -172.46 -0.51 -11.13 16 13 C 0.13 2.64 5.88 -4.04 -0.02 2.61 16 14 C 0.01 0.33 5.30 -27.88 -0.15 0.18 16 15 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 16 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 19 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.52 9.01 6.32 -11.03 -0.07 8.94 16 24 O -0.53 -10.89 13.82 5.56 0.08 -10.81 16 25 C -0.09 -0.97 4.76 -26.89 -0.13 -1.09 16 26 C 0.04 0.51 5.06 -3.78 -0.02 0.49 16 27 O 0.11 1.27 11.20 17.17 0.19 1.46 16 28 N -0.37 -4.56 12.07 33.42 0.40 -4.15 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.17 1.31 8.06 -52.48 -0.42 0.89 16 33 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 34 H 0.10 0.81 7.98 -51.93 -0.41 0.40 16 35 H 0.07 1.07 5.79 -51.93 -0.30 0.77 16 36 H 0.07 0.77 8.01 -51.93 -0.42 0.36 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 0.80 8.14 -51.92 -0.42 0.37 16 39 H 0.08 0.90 7.89 -51.93 -0.41 0.49 16 40 H 0.09 0.70 7.87 -51.93 -0.41 0.29 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.07 1.52 7.92 -51.93 -0.41 1.11 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 48 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.05 0.71 6.65 -51.93 -0.35 0.36 16 51 H 0.07 0.78 5.98 -51.93 -0.31 0.47 16 LS Contribution 402.09 15.07 6.06 6.06 Total: -1.00 -33.56 402.09 -9.69 -43.25 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -8.48 Total: -1.57 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -2.07 Total: -6.66 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: -0.46 Total: -48.22 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.27 Total: -9.35 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.56 -9.69 -43.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273819035.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.231 kcal (2) G-P(sol) polarization free energy of solvation -33.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds