Wall clock time and date at job start Wed Apr 1 2020 04:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.41378 * 126.80383 * 2 1 4 4 C 1.35447 * 103.98783 * 179.97438 * 3 2 1 5 5 C 1.50707 * 126.77906 * 179.97438 * 4 3 2 6 6 N 1.46894 * 109.47065 * 89.99533 * 5 4 3 7 7 C 1.46866 * 110.99831 * 170.00181 * 6 5 4 8 8 C 1.53138 * 109.44691 * 186.35533 * 7 6 5 9 9 C 1.52543 * 109.31923 * 301.72764 * 8 7 6 10 10 C 1.54126 * 110.08411 * 178.11080 * 9 8 7 11 11 C 1.54594 * 101.65077 * 143.30142 * 10 9 8 12 12 N 1.46817 * 105.49553 * 335.01992 * 11 10 9 13 13 C 1.46500 * 124.36211 * 196.92308 * 12 11 10 14 14 C 1.53006 * 109.46998 * 89.99797 * 13 12 11 15 15 C 1.50699 * 109.46866 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00270 * 180.02562 * 15 14 13 18 18 N 1.31522 * 119.99834 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00496 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.47141 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47494 * 119.99680 * 19 17 15 22 22 H 1.48505 * 109.47047 * 239.99860 * 19 17 15 23 23 C 1.34577 * 111.27702 * 17.18106 * 12 11 10 24 24 O 1.21280 * 125.02866 * 179.02726 * 23 12 11 25 25 C 1.52539 * 110.49347 * 56.31083 * 9 8 7 26 26 C 1.46850 * 111.00081 * 294.35633 * 6 5 4 27 27 O 1.34044 * 106.44757 * 0.23535 * 4 3 2 28 28 N 1.20927 * 111.56350 * 359.57499 * 27 4 3 29 29 H 1.08995 * 109.47688 * 89.99783 * 1 2 3 30 30 H 1.08997 * 109.47252 * 209.99983 * 1 2 3 31 31 H 1.08998 * 109.47006 * 329.99714 * 1 2 3 32 32 H 1.08007 * 128.00571 * 359.96710 * 3 2 1 33 33 H 1.08998 * 109.46388 * 329.99281 * 5 4 3 34 34 H 1.09001 * 109.46694 * 209.99825 * 5 4 3 35 35 H 1.09001 * 109.46993 * 66.36767 * 7 6 5 36 36 H 1.09002 * 109.47366 * 306.35225 * 7 6 5 37 37 H 1.08996 * 109.49962 * 181.77380 * 8 7 6 38 38 H 1.09008 * 109.49598 * 61.68145 * 8 7 6 39 39 H 1.08996 * 110.99463 * 25.21114 * 10 9 8 40 40 H 1.09004 * 110.99313 * 261.38991 * 10 9 8 41 41 H 1.09003 * 110.23944 * 216.01734 * 11 10 9 42 42 H 1.08998 * 110.31512 * 94.06555 * 11 10 9 43 43 H 1.09000 * 109.47175 * 329.99929 * 13 12 11 44 44 H 1.09001 * 109.47297 * 209.99436 * 13 12 11 45 45 H 1.08993 * 109.46955 * 300.00226 * 14 13 12 46 46 H 1.09000 * 109.47050 * 60.00054 * 14 13 12 47 47 H 0.96992 * 120.00032 * 180.02562 * 18 17 15 48 48 H 1.08999 * 109.50194 * 63.66019 * 25 9 8 49 49 H 1.08999 * 109.49741 * 183.75122 * 25 9 8 50 50 H 1.09001 * 109.47315 * 293.64943 * 26 6 5 51 51 H 1.09000 * 109.47653 * 53.65665 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6024 0.6068 0.0006 5 6 4.9022 1.3695 0.0003 6 7 5.3242 1.6184 1.3852 7 6 6.6940 2.1462 1.4312 8 6 7.1544 2.2429 2.8885 9 6 6.1963 3.1433 3.6618 10 6 6.6166 3.2152 5.1429 11 6 6.2925 4.6868 5.4883 12 7 6.3494 5.4109 4.2124 13 6 6.4597 6.8667 4.0921 14 6 7.9366 7.2647 4.0527 15 6 8.0501 8.7624 3.9295 16 1 7.1581 9.3696 3.8835 17 6 9.2926 9.3574 3.8745 18 7 10.3789 8.6180 3.9300 19 14 9.4334 11.2138 3.7226 20 1 8.0745 11.8115 3.6805 21 1 10.1750 11.7514 4.8915 22 1 10.1624 11.5545 2.4745 23 6 6.2815 4.5654 3.1676 24 8 6.2904 4.8979 2.0013 25 6 4.7664 2.6244 3.5477 26 6 4.3835 2.5150 2.0689 27 8 3.4538 -0.7254 -0.0044 28 7 2.2868 -1.0424 0.0006 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 2.0709 2.1743 -0.0005 33 1 4.7652 2.3205 -0.5143 34 1 5.6661 0.7854 -0.5130 35 1 6.7172 3.1365 0.9763 36 1 7.3592 1.4787 0.8833 37 1 8.1591 2.6640 2.9254 38 1 7.1596 1.2485 3.3351 39 1 7.6815 3.0128 5.2569 40 1 6.0236 2.5317 5.7507 41 1 7.0348 5.0839 6.1807 42 1 5.2950 4.7630 5.9211 43 1 5.9788 7.3396 4.9484 44 1 5.9708 7.1936 3.1744 45 1 8.4256 6.9378 4.9703 46 1 8.4176 6.7919 3.1964 47 1 11.2530 9.0366 3.8917 48 1 4.6974 1.6421 4.0150 49 1 4.0878 3.3146 4.0490 50 1 4.4234 3.5026 1.6092 51 1 3.3731 2.1151 1.9837 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273819035.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:55:34 Heat of formation + Delta-G solvation = 2.856688 kcal Electronic energy + Delta-G solvation = -31353.245170 eV Core-core repulsion = 27254.522265 eV Total energy + Delta-G solvation = -4098.722905 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.88358 -42.19416 -39.19765 -37.48133 -36.30058 -35.69386 -34.99859 -33.34741 -31.95045 -31.79271 -29.93218 -29.54600 -27.84766 -26.95901 -25.24875 -24.40134 -23.92004 -23.56889 -22.28102 -21.57260 -20.91002 -19.55405 -18.69656 -18.64905 -18.15519 -17.34034 -17.15872 -16.72807 -16.40070 -16.21147 -16.08502 -15.67936 -15.29120 -15.03771 -14.67083 -14.59499 -14.44017 -14.27976 -14.18099 -14.10230 -13.96484 -13.83557 -13.46568 -13.38449 -13.23107 -13.07253 -12.98690 -12.90477 -12.72396 -12.56197 -12.28809 -12.08835 -12.00064 -11.93973 -11.84500 -11.40825 -11.34781 -11.25794 -10.91907 -10.63262 -10.50547 -10.39849 -9.51313 -9.30972 -8.25506 -6.38236 0.44174 1.25170 1.37605 1.38880 1.51916 1.67152 2.09847 2.19282 2.40684 2.92961 3.07961 3.29623 3.32025 3.50336 3.51212 3.70829 3.99084 4.03458 4.06926 4.07988 4.27364 4.30965 4.33137 4.37508 4.48806 4.51521 4.58157 4.60104 4.63916 4.67362 4.69337 4.72625 4.77472 4.85634 4.89310 4.90186 4.92579 4.97600 4.99437 5.09273 5.13109 5.25025 5.25520 5.30030 5.34185 5.46164 5.60543 5.82545 5.95167 6.00199 6.14316 6.36695 6.77518 7.29285 7.30050 7.32382 8.86687 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019008 B = 0.002200 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.720521 B =12725.347073 C =13005.053241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.013 3.987 3 C -0.232 4.232 4 C -0.009 4.009 5 C 0.130 3.870 6 N -0.525 5.525 7 C 0.046 3.954 8 C -0.089 4.089 9 C -0.086 4.086 10 C -0.113 4.113 11 C 0.092 3.908 12 N -0.622 5.622 13 C 0.143 3.857 14 C 0.026 3.974 15 C -0.543 4.543 16 H 0.065 0.935 17 C 0.000 4.000 18 N -0.932 5.932 19 Si 0.970 3.030 20 H -0.259 1.259 21 H -0.274 1.274 22 H -0.281 1.281 23 C 0.508 3.492 24 O -0.574 6.574 25 C -0.084 4.084 26 C 0.047 3.953 27 O 0.088 5.912 28 N -0.398 5.398 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.185 0.815 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.035 0.965 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.105 0.895 39 H 0.083 0.917 40 H 0.129 0.871 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.051 0.949 45 H -0.001 1.001 46 H -0.027 1.027 47 H 0.264 0.736 48 H 0.104 0.896 49 H 0.076 0.924 50 H 0.022 0.978 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.929 -18.678 -1.012 25.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.146 4.146 3 C -0.254 4.254 4 C -0.073 4.073 5 C 0.002 3.998 6 N -0.250 5.250 7 C -0.081 4.081 8 C -0.127 4.127 9 C -0.089 4.089 10 C -0.151 4.151 11 C -0.029 4.029 12 N -0.353 5.353 13 C 0.021 3.979 14 C -0.012 4.012 15 C -0.582 4.582 16 H 0.084 0.916 17 C -0.199 4.199 18 N -0.572 5.572 19 Si 0.794 3.206 20 H -0.183 1.183 21 H -0.199 1.199 22 H -0.207 1.207 23 C 0.297 3.703 24 O -0.454 6.454 25 C -0.122 4.122 26 C -0.081 4.081 27 O 0.025 5.975 28 N -0.106 5.106 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.202 0.798 33 H 0.091 0.909 34 H 0.131 0.869 35 H 0.054 0.946 36 H 0.109 0.891 37 H 0.075 0.925 38 H 0.124 0.876 39 H 0.101 0.899 40 H 0.147 0.853 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.070 0.930 45 H 0.018 0.982 46 H -0.009 1.009 47 H 0.073 0.927 48 H 0.123 0.877 49 H 0.095 0.905 50 H 0.040 0.960 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.949 -20.165 -1.339 26.376 hybrid contribution 0.739 2.918 -0.783 3.111 sum -16.209 -17.247 -2.122 23.763 Atomic orbital electron populations 1.20312 0.83819 1.04764 1.04391 1.24156 1.00468 0.88468 1.01475 1.22710 0.90966 1.01789 1.09976 1.24464 0.98317 0.83318 1.01198 1.20509 0.90747 0.97559 0.91009 1.61963 1.02478 1.46853 1.13738 1.22245 0.88851 0.99118 0.97858 1.21392 0.96728 1.00177 0.94423 1.21078 0.99270 0.90976 0.97621 1.22759 1.03682 0.95331 0.93300 1.22389 1.03223 0.92339 0.84986 1.48719 1.71284 1.06788 1.08537 1.21310 0.97459 0.77885 1.01234 1.19190 0.92156 0.95383 0.94497 1.21572 0.92933 0.92964 1.50713 0.91635 1.26021 0.95438 1.03893 0.94506 1.70118 0.98298 1.37564 1.51192 0.85331 0.78731 0.78767 0.77803 1.18280 1.19897 1.20735 1.21422 0.74501 0.89579 0.84760 1.90588 1.52717 1.82688 1.19411 1.21407 0.92227 1.02770 0.95812 1.22232 0.96587 0.94209 0.95051 1.84788 1.21520 1.23458 1.67753 1.73852 0.89780 1.25335 1.21636 0.89026 0.90431 0.88186 0.79786 0.90945 0.86898 0.94632 0.89071 0.92508 0.87639 0.89853 0.85271 0.90772 0.88652 0.89489 0.93027 0.98247 1.00869 0.92695 0.87727 0.90513 0.96003 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.47 71.24 0.75 -0.12 16 2 C 0.01 0.24 7.33 43.58 0.32 0.56 16 3 C -0.23 -4.13 9.55 22.40 0.21 -3.92 16 4 C -0.01 -0.17 6.36 25.04 0.16 -0.01 16 5 C 0.13 2.42 5.53 85.56 0.47 2.90 16 6 N -0.53 -11.07 4.63 -900.43 -4.17 -15.25 16 7 C 0.05 1.11 5.24 86.36 0.45 1.56 16 8 C -0.09 -2.03 4.78 30.49 0.15 -1.88 16 9 C -0.09 -2.03 0.55 -52.82 -0.03 -2.06 16 10 C -0.11 -2.10 6.21 31.52 0.20 -1.90 16 11 C 0.09 2.22 7.35 86.86 0.64 2.86 16 12 N -0.62 -21.83 2.94 -818.04 -2.40 -24.23 16 13 C 0.14 6.07 5.88 86.38 0.51 6.58 16 14 C 0.03 1.39 5.30 29.85 0.16 1.55 16 15 C -0.54 -31.15 9.11 25.60 0.23 -30.92 16 16 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 17 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 18 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 19 Si 0.97 44.40 29.54 68.60 2.03 46.42 16 20 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 23 C 0.51 17.93 6.32 87.72 0.55 18.49 16 24 O -0.57 -25.02 13.82 -3.03 -0.04 -25.06 16 25 C -0.08 -1.61 4.76 30.49 0.15 -1.46 16 26 C 0.05 1.03 5.06 86.36 0.44 1.46 16 27 O 0.09 2.06 11.20 71.59 0.80 2.86 16 28 N -0.40 -9.52 12.07 -49.55 -0.60 -10.12 16 29 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.18 2.57 8.06 -2.91 -0.02 2.54 16 33 H 0.07 1.38 8.12 -2.39 -0.02 1.36 16 34 H 0.11 1.77 7.98 -2.39 -0.02 1.75 16 35 H 0.04 1.13 5.79 -2.39 -0.01 1.11 16 36 H 0.09 1.83 8.01 -2.39 -0.02 1.81 16 37 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 39 H 0.08 1.59 7.89 -2.39 -0.02 1.57 16 40 H 0.13 1.39 7.87 -2.39 -0.02 1.38 16 41 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 44 H 0.05 2.35 7.92 -2.39 -0.02 2.33 16 45 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 46 H -0.03 -1.70 8.14 -2.39 -0.02 -1.72 16 47 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 48 H 0.10 1.56 8.14 -2.39 -0.02 1.55 16 49 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.02 0.61 6.65 -2.39 -0.02 0.60 16 51 H 0.09 1.65 5.98 -2.39 -0.01 1.64 16 Total: -1.00 -77.11 402.09 2.62 -74.48 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.91 Total: 13.85 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 5.81 Total: -5.88 kcal Atomic # 7 Polarization: -99.79 SS G_CDS: -6.89 Total: -106.68 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: 0.76 Total: -22.20 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -77.11 2.62 -74.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273819035.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.339 kcal (2) G-P(sol) polarization free energy of solvation -77.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds