Wall clock time and date at job start Wed Apr 1 2020 04:46:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 N 1.30174 * 126.80159 * 2 1
4 4 O 1.20926 * 111.60603 * 179.97438 * 3 2 1
5 5 C 1.34037 * 111.56322 * 359.76738 * 4 3 2
6 6 C 1.50704 * 126.77572 * 180.28584 * 5 4 3
7 7 C 1.35442 * 106.45012 * 0.37935 * 5 4 3
8 8 C 1.50706 * 128.01261 * 179.91031 * 7 5 4
9 9 N 1.46503 * 109.46972 * 276.25174 * 8 7 5
10 10 C 1.46901 * 124.37784 * 89.57180 * 9 8 7
11 11 C 1.54748 * 105.51981 * 163.17007 * 10 9 8
12 12 C 1.53432 * 101.46410 * 24.38444 * 11 10 9
13 13 C 1.53707 * 111.12144 * 214.92146 * 12 11 10
14 14 C 1.54815 * 102.78189 * 203.58914 * 13 12 11
15 15 C 1.54077 * 105.20143 * 20.77796 * 14 13 12
16 16 N 1.47190 * 111.46910 * 98.35900 * 12 11 10
17 17 C 1.46899 * 111.00322 * 278.28092 * 16 12 11
18 18 C 1.53002 * 109.47448 * 176.57802 * 17 16 12
19 19 C 1.50696 * 109.47156 * 185.03889 * 18 17 16
20 20 H 1.07997 * 119.99916 * 355.44817 * 19 18 17
21 21 C 1.37873 * 120.00104 * 175.44988 * 19 18 17
22 22 N 1.31511 * 120.00555 * 185.22123 * 21 19 18
23 23 Si 1.86804 * 119.99929 * 5.22414 * 21 19 18
24 24 H 1.48501 * 109.47301 * 84.98643 * 23 21 19
25 25 H 1.48498 * 109.46932 * 324.99069 * 23 21 19
26 26 H 1.48497 * 109.47115 * 204.99154 * 23 21 19
27 27 C 1.34816 * 124.37315 * 269.53042 * 9 8 7
28 28 O 1.21284 * 125.16716 * 1.18023 * 27 9 8
29 29 H 1.08995 * 109.46896 * 275.38568 * 1 2 3
30 30 H 1.09003 * 109.47090 * 35.38339 * 1 2 3
31 31 H 1.09003 * 109.47438 * 155.38281 * 1 2 3
32 32 H 1.08999 * 109.46683 * 270.11346 * 6 5 4
33 33 H 1.09002 * 109.46931 * 30.10993 * 6 5 4
34 34 H 1.09002 * 109.47287 * 150.11398 * 6 5 4
35 35 H 1.08995 * 109.47247 * 156.24706 * 8 7 5
36 36 H 1.08998 * 109.46501 * 36.24781 * 8 7 5
37 37 H 1.09001 * 110.23336 * 44.16273 * 10 9 8
38 38 H 1.08993 * 110.30993 * 282.22090 * 10 9 8
39 39 H 1.09001 * 111.02609 * 266.33585 * 11 10 9
40 40 H 1.09001 * 111.05811 * 142.44923 * 11 10 9
41 41 H 1.08993 * 110.74850 * 85.26819 * 13 12 11
42 42 H 1.08999 * 110.90758 * 321.98329 * 13 12 11
43 43 H 1.08996 * 110.29680 * 261.84362 * 14 13 12
44 44 H 1.08997 * 110.29735 * 139.70985 * 14 13 12
45 45 H 1.09007 * 109.89858 * 241.68412 * 15 14 13
46 46 H 1.08995 * 109.90417 * 120.45543 * 15 14 13
47 47 H 1.09002 * 109.46651 * 56.57691 * 17 16 12
48 48 H 1.08997 * 109.47481 * 296.58110 * 17 16 12
49 49 H 1.08998 * 109.46554 * 65.03616 * 18 17 16
50 50 H 1.09000 * 109.46786 * 305.04142 * 18 17 16
51 51 H 0.96994 * 120.00546 * 185.01109 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2868 1.0423 0.0000
4 8 3.4538 0.7254 0.0005
5 6 3.6024 -0.6067 0.0060
6 6 4.9021 -1.3695 0.0143
7 6 2.3540 -1.1320 0.0005
8 6 1.9590 -2.5864 0.0013
9 7 1.9834 -3.0998 -1.3706
10 6 3.1622 -3.6979 -2.0116
11 6 2.6203 -4.4642 -3.2420
12 6 1.3092 -3.7153 -3.5145
13 6 0.2209 -4.6722 -4.0268
14 6 -0.7337 -3.7257 -4.7947
15 6 0.1093 -2.4772 -5.1182
16 7 1.4705 -2.7191 -4.5860
17 6 2.0610 -1.4783 -4.0668
18 6 2.2916 -0.5011 -5.2213
19 6 3.0095 0.7209 -4.7093
20 1 3.2094 0.8269 -3.6533
21 6 3.4110 1.7038 -5.5889
22 7 4.1266 2.7196 -5.1581
23 14 2.9385 1.5926 -7.3928
24 1 1.5845 2.1710 -7.5864
25 1 2.9338 0.1693 -7.8164
26 1 3.9214 2.3489 -8.2095
27 6 0.9268 -3.0851 -2.2077
28 8 -0.1666 -2.6308 -1.9446
29 1 -0.3633 0.0965 1.0231
30 1 -0.3633 0.8379 -0.5951
31 1 -0.3634 -0.9343 -0.4281
32 1 5.2208 -1.5553 -1.0114
33 1 5.6633 -0.7848 0.5309
34 1 4.7624 -2.3200 0.5292
35 1 0.9540 -2.6897 0.4101
36 1 2.6604 -3.1529 0.6138
37 1 3.6554 -4.3867 -1.3257
38 1 3.8566 -2.9196 -2.3279
39 1 2.4304 -5.5097 -2.9991
40 1 3.3024 -4.3792 -4.0879
41 1 -0.2960 -5.1500 -3.1947
42 1 0.6446 -5.4201 -4.6970
43 1 -1.5837 -3.4561 -4.1680
44 1 -1.0764 -4.1992 -5.7147
45 1 -0.3265 -1.6008 -4.6383
46 1 0.1536 -2.3287 -6.1971
47 1 3.0126 -1.7027 -3.5851
48 1 1.3832 -1.0294 -3.3408
49 1 1.3316 -0.2074 -5.6459
50 1 2.8965 -0.9827 -5.9896
51 1 4.3475 3.4473 -5.7602
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001274037938.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:46:28
Heat of formation + Delta-G solvation = 35.578376 kcal
Electronic energy + Delta-G solvation = -33750.217952 eV
Core-core repulsion = 29652.913967 eV
Total energy + Delta-G solvation = -4097.303986 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-44.61538 -41.31043 -37.66894 -36.44051 -34.96890 -33.82485 -33.41967 -32.01559
-31.57775 -29.04327 -28.49802 -28.29907 -27.63665 -26.47334 -24.64065 -23.39851
-22.19204 -21.43612 -20.79504 -20.01926 -19.72343 -18.65046 -17.45472 -17.05855
-16.84059 -16.38735 -16.31989 -15.35101 -15.18330 -14.73208 -14.28490 -14.18331
-13.99824 -13.94128 -13.57153 -13.33197 -13.21753 -13.10089 -12.90157 -12.77777
-12.58925 -12.41311 -12.39086 -12.28672 -12.17501 -11.93080 -11.84280 -11.59672
-11.34765 -11.03319 -10.98431 -10.76066 -10.68978 -10.66126 -9.97581 -9.90760
-9.76997 -9.71615 -9.58313 -9.23350 -9.03323 -8.72240 -8.46738 -8.02837
-6.00637 -3.99433 1.66515 2.35463 2.64501 3.19086 3.34176 3.36420
3.40636 3.44918 4.12952 4.37976 4.39975 4.48680 4.52593 4.63556
4.70728 4.81316 4.88091 5.01740 5.12168 5.18959 5.25998 5.31514
5.32050 5.37725 5.43838 5.46201 5.54325 5.65105 5.68125 5.74622
5.76709 5.79224 5.85072 5.89445 5.97768 5.99234 6.06444 6.09644
6.17049 6.22660 6.27361 6.40384 6.41733 6.54197 6.72470 7.06182
7.09943 7.15629 7.40431 7.54714 7.83280 8.25736 8.55219 8.61933
9.02670 9.60821 11.12200
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.007803 B = 0.006040 C = 0.004174
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3587.678410 B = 4634.285658 C = 6706.757461
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.082 4.082
2 C 0.036 3.964
3 N -0.358 5.358
4 O 0.106 5.894
5 C -0.012 4.012
6 C -0.075 4.075
7 C -0.232 4.232
8 C 0.210 3.790
9 N -0.615 5.615
10 C 0.097 3.903
11 C -0.116 4.116
12 C 0.058 3.942
13 C -0.097 4.097
14 C -0.126 4.126
15 C 0.037 3.963
16 N -0.485 5.485
17 C 0.060 3.940
18 C -0.004 4.004
19 C -0.516 4.516
20 H 0.067 0.933
21 C 0.071 3.929
22 N -0.899 5.899
23 Si 0.876 3.124
24 H -0.278 1.278
25 H -0.264 1.264
26 H -0.288 1.288
27 C 0.515 3.485
28 O -0.521 6.521
29 H 0.072 0.928
30 H 0.074 0.926
31 H 0.094 0.906
32 H 0.091 0.909
33 H 0.083 0.917
34 H 0.086 0.914
35 H 0.092 0.908
36 H 0.089 0.911
37 H 0.078 0.922
38 H 0.076 0.924
39 H 0.084 0.916
40 H 0.103 0.897
41 H 0.069 0.931
42 H 0.082 0.918
43 H 0.070 0.930
44 H 0.069 0.931
45 H 0.051 0.949
46 H 0.079 0.921
47 H 0.069 0.931
48 H 0.028 0.972
49 H 0.008 0.992
50 H 0.027 0.973
51 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.479 -18.688 10.158 21.414
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.123 4.123
3 N -0.063 5.063
4 O 0.041 5.959
5 C -0.077 4.077
6 C -0.132 4.132
7 C -0.237 4.237
8 C 0.088 3.912
9 N -0.349 5.349
10 C -0.025 4.025
11 C -0.154 4.154
12 C -0.035 4.035
13 C -0.135 4.135
14 C -0.164 4.164
15 C -0.090 4.090
16 N -0.210 5.210
17 C -0.066 4.066
18 C -0.042 4.042
19 C -0.555 4.555
20 H 0.085 0.915
21 C -0.131 4.131
22 N -0.538 5.538
23 Si 0.703 3.297
24 H -0.204 1.204
25 H -0.188 1.188
26 H -0.214 1.214
27 C 0.301 3.699
28 O -0.395 6.395
29 H 0.090 0.910
30 H 0.093 0.907
31 H 0.113 0.887
32 H 0.110 0.890
33 H 0.102 0.898
34 H 0.105 0.895
35 H 0.110 0.890
36 H 0.107 0.893
37 H 0.096 0.904
38 H 0.094 0.906
39 H 0.103 0.897
40 H 0.122 0.878
41 H 0.088 0.912
42 H 0.100 0.900
43 H 0.089 0.911
44 H 0.087 0.913
45 H 0.069 0.931
46 H 0.098 0.902
47 H 0.087 0.913
48 H 0.046 0.954
49 H 0.026 0.974
50 H 0.045 0.955
51 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -2.785 -17.131 9.894 19.978
hybrid contribution -0.689 0.054 -0.349 0.774
sum -3.473 -17.077 9.545 19.869
Atomic orbital electron populations
1.20265 0.86225 1.05043 1.02404 1.23370 0.98832 0.88209 1.01923
1.73877 0.89138 1.23784 1.19474 1.84859 1.21778 1.22134 1.67131
1.24211 0.97843 0.84376 1.01286 1.20363 0.90369 0.98103 1.04380
1.21188 0.91993 0.97712 1.12802 1.19360 1.02782 0.86867 0.82196
1.48493 1.12545 1.60663 1.13204 1.22308 0.88258 0.97196 0.94783
1.22471 0.96428 0.98363 0.98128 1.22119 0.96674 0.95114 0.89641
1.22192 0.94886 0.96822 0.99633 1.22431 0.98360 0.95615 1.00034
1.22904 0.87980 0.97243 1.00921 1.64916 1.19681 1.10892 1.25470
1.22389 0.97990 0.87973 0.98280 1.19512 0.96557 0.94038 0.94075
1.20978 1.36219 1.02656 0.95631 0.91472 1.24951 0.93975 0.95649
0.98481 1.69928 1.37445 1.09907 1.36519 0.86870 0.78357 0.78686
0.85786 1.20374 1.18846 1.21450 1.21219 0.83781 0.78418 0.86522
1.90628 1.22994 1.46949 1.78936 0.90972 0.90737 0.88741 0.89038
0.89777 0.89546 0.89014 0.89300 0.90385 0.90587 0.89736 0.87836
0.91190 0.89980 0.91122 0.91274 0.93061 0.90243 0.91314 0.95367
0.97405 0.95513 0.92773
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.29 10.34 36.00 0.37 -0.92 16
2 C 0.04 0.64 7.33 -82.10 -0.60 0.04 16
3 N -0.36 -7.23 12.07 33.42 0.40 -6.83 16
4 O 0.11 1.99 11.20 17.18 0.19 2.18 16
5 C -0.01 -0.18 7.49 -35.30 -0.26 -0.45 16
6 C -0.07 -0.73 10.30 36.01 0.37 -0.36 16
7 C -0.23 -3.45 5.90 -104.42 -0.62 -4.07 16
8 C 0.21 2.45 6.17 -5.19 -0.03 2.41 16
9 N -0.61 -7.85 2.91 -173.92 -0.51 -8.35 16
10 C 0.10 1.00 6.58 -2.90 -0.02 0.98 16
11 C -0.12 -1.21 6.26 -25.59 -0.16 -1.37 16
12 C 0.06 0.81 0.63 -132.32 -0.08 0.72 16
13 C -0.10 -1.15 5.84 -25.41 -0.15 -1.30 16
14 C -0.13 -1.67 6.55 -25.21 -0.17 -1.84 16
15 C 0.04 0.62 5.52 -2.58 -0.01 0.61 16
16 N -0.49 -8.37 4.96 -218.03 -1.08 -9.45 16
17 C 0.06 1.27 3.81 -3.82 -0.01 1.26 16
18 C 0.00 -0.10 3.97 -27.88 -0.11 -0.21 16
19 C -0.52 -15.24 9.65 -34.44 -0.33 -15.58 16
20 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16
21 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16
22 N -0.90 -28.48 13.95 55.43 0.77 -27.71 16
23 Si 0.88 22.42 27.47 -169.99 -4.67 17.75 16
24 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16
25 H -0.26 -6.49 6.59 56.52 0.37 -6.12 16
26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16
27 C 0.51 7.94 4.73 -11.29 -0.05 7.88 16
28 O -0.52 -9.42 15.28 5.55 0.08 -9.33 16
29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16
30 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16
31 H 0.09 1.53 6.02 -51.93 -0.31 1.22 16
32 H 0.09 0.92 7.90 -51.93 -0.41 0.51 16
33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16
34 H 0.09 0.57 7.60 -51.93 -0.39 0.17 16
35 H 0.09 1.08 7.69 -51.93 -0.40 0.68 16
36 H 0.09 0.71 7.64 -51.93 -0.40 0.32 16
37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16
38 H 0.08 0.90 6.61 -51.93 -0.34 0.56 16
39 H 0.08 0.66 7.94 -51.93 -0.41 0.25 16
40 H 0.10 1.12 8.07 -51.93 -0.42 0.70 16
41 H 0.07 0.78 8.00 -51.93 -0.42 0.37 16
42 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16
43 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16
44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
45 H 0.05 0.98 7.62 -51.92 -0.40 0.59 16
46 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16
47 H 0.07 1.43 5.92 -51.93 -0.31 1.13 16
48 H 0.03 0.67 6.82 -51.93 -0.35 0.32 16
49 H 0.01 0.20 7.06 -51.93 -0.37 -0.17 16
50 H 0.03 0.67 7.15 -51.93 -0.37 0.30 16
51 H 0.26 7.79 8.32 -40.82 -0.34 7.46 16
LS Contribution 398.63 15.07 6.01 6.01
Total: -1.00 -36.38 398.63 -9.03 -45.41
By element:
Atomic # 1 Polarization: 8.71 SS G_CDS: -8.26 Total: 0.45 kcal
Atomic # 6 Polarization: -8.16 SS G_CDS: -1.97 Total: -10.13 kcal
Atomic # 7 Polarization: -51.93 SS G_CDS: -0.41 Total: -52.34 kcal
Atomic # 8 Polarization: -7.43 SS G_CDS: 0.28 Total: -7.15 kcal
Atomic # 14 Polarization: 22.42 SS G_CDS: -4.67 Total: 17.75 kcal
Total LS contribution 6.01 Total: 6.01 kcal
Total: -36.38 -9.03 -45.41 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001274037938.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 80.991 kcal
(2) G-P(sol) polarization free energy of solvation -36.383 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.608 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.413 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.578 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds