Wall clock time and date at job start Wed Apr 1 2020 04:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30174 * 126.80159 * 2 1 4 4 O 1.20926 * 111.60603 * 179.97438 * 3 2 1 5 5 C 1.34037 * 111.56322 * 359.76738 * 4 3 2 6 6 C 1.50704 * 126.77572 * 180.28584 * 5 4 3 7 7 C 1.35442 * 106.45012 * 0.37935 * 5 4 3 8 8 C 1.50706 * 128.01261 * 179.91031 * 7 5 4 9 9 N 1.46503 * 109.46972 * 276.25174 * 8 7 5 10 10 C 1.46901 * 124.37784 * 89.57180 * 9 8 7 11 11 C 1.54748 * 105.51981 * 163.17007 * 10 9 8 12 12 C 1.53432 * 101.46410 * 24.38444 * 11 10 9 13 13 C 1.53707 * 111.12144 * 214.92146 * 12 11 10 14 14 C 1.54815 * 102.78189 * 203.58914 * 13 12 11 15 15 C 1.54077 * 105.20143 * 20.77796 * 14 13 12 16 16 N 1.47190 * 111.46910 * 98.35900 * 12 11 10 17 17 C 1.46899 * 111.00322 * 278.28092 * 16 12 11 18 18 C 1.53002 * 109.47448 * 176.57802 * 17 16 12 19 19 C 1.50696 * 109.47156 * 185.03889 * 18 17 16 20 20 H 1.07997 * 119.99916 * 355.44817 * 19 18 17 21 21 C 1.37873 * 120.00104 * 175.44988 * 19 18 17 22 22 N 1.31511 * 120.00555 * 185.22123 * 21 19 18 23 23 Si 1.86804 * 119.99929 * 5.22414 * 21 19 18 24 24 H 1.48501 * 109.47301 * 84.98643 * 23 21 19 25 25 H 1.48498 * 109.46932 * 324.99069 * 23 21 19 26 26 H 1.48497 * 109.47115 * 204.99154 * 23 21 19 27 27 C 1.34816 * 124.37315 * 269.53042 * 9 8 7 28 28 O 1.21284 * 125.16716 * 1.18023 * 27 9 8 29 29 H 1.08995 * 109.46896 * 275.38568 * 1 2 3 30 30 H 1.09003 * 109.47090 * 35.38339 * 1 2 3 31 31 H 1.09003 * 109.47438 * 155.38281 * 1 2 3 32 32 H 1.08999 * 109.46683 * 270.11346 * 6 5 4 33 33 H 1.09002 * 109.46931 * 30.10993 * 6 5 4 34 34 H 1.09002 * 109.47287 * 150.11398 * 6 5 4 35 35 H 1.08995 * 109.47247 * 156.24706 * 8 7 5 36 36 H 1.08998 * 109.46501 * 36.24781 * 8 7 5 37 37 H 1.09001 * 110.23336 * 44.16273 * 10 9 8 38 38 H 1.08993 * 110.30993 * 282.22090 * 10 9 8 39 39 H 1.09001 * 111.02609 * 266.33585 * 11 10 9 40 40 H 1.09001 * 111.05811 * 142.44923 * 11 10 9 41 41 H 1.08993 * 110.74850 * 85.26819 * 13 12 11 42 42 H 1.08999 * 110.90758 * 321.98329 * 13 12 11 43 43 H 1.08996 * 110.29680 * 261.84362 * 14 13 12 44 44 H 1.08997 * 110.29735 * 139.70985 * 14 13 12 45 45 H 1.09007 * 109.89858 * 241.68412 * 15 14 13 46 46 H 1.08995 * 109.90417 * 120.45543 * 15 14 13 47 47 H 1.09002 * 109.46651 * 56.57691 * 17 16 12 48 48 H 1.08997 * 109.47481 * 296.58110 * 17 16 12 49 49 H 1.08998 * 109.46554 * 65.03616 * 18 17 16 50 50 H 1.09000 * 109.46786 * 305.04142 * 18 17 16 51 51 H 0.96994 * 120.00546 * 185.01109 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7254 0.0005 5 6 3.6024 -0.6067 0.0060 6 6 4.9021 -1.3695 0.0143 7 6 2.3540 -1.1320 0.0005 8 6 1.9590 -2.5864 0.0013 9 7 1.9834 -3.0998 -1.3706 10 6 3.1622 -3.6979 -2.0116 11 6 2.6203 -4.4642 -3.2420 12 6 1.3092 -3.7153 -3.5145 13 6 0.2209 -4.6722 -4.0268 14 6 -0.7337 -3.7257 -4.7947 15 6 0.1093 -2.4772 -5.1182 16 7 1.4705 -2.7191 -4.5860 17 6 2.0610 -1.4783 -4.0668 18 6 2.2916 -0.5011 -5.2213 19 6 3.0095 0.7209 -4.7093 20 1 3.2094 0.8269 -3.6533 21 6 3.4110 1.7038 -5.5889 22 7 4.1266 2.7196 -5.1581 23 14 2.9385 1.5926 -7.3928 24 1 1.5845 2.1710 -7.5864 25 1 2.9338 0.1693 -7.8164 26 1 3.9214 2.3489 -8.2095 27 6 0.9268 -3.0851 -2.2077 28 8 -0.1666 -2.6308 -1.9446 29 1 -0.3633 0.0965 1.0231 30 1 -0.3633 0.8379 -0.5951 31 1 -0.3634 -0.9343 -0.4281 32 1 5.2208 -1.5553 -1.0114 33 1 5.6633 -0.7848 0.5309 34 1 4.7624 -2.3200 0.5292 35 1 0.9540 -2.6897 0.4101 36 1 2.6604 -3.1529 0.6138 37 1 3.6554 -4.3867 -1.3257 38 1 3.8566 -2.9196 -2.3279 39 1 2.4304 -5.5097 -2.9991 40 1 3.3024 -4.3792 -4.0879 41 1 -0.2960 -5.1500 -3.1947 42 1 0.6446 -5.4201 -4.6970 43 1 -1.5837 -3.4561 -4.1680 44 1 -1.0764 -4.1992 -5.7147 45 1 -0.3265 -1.6008 -4.6383 46 1 0.1536 -2.3287 -6.1971 47 1 3.0126 -1.7027 -3.5851 48 1 1.3832 -1.0294 -3.3408 49 1 1.3316 -0.2074 -5.6459 50 1 2.8965 -0.9827 -5.9896 51 1 4.3475 3.4473 -5.7602 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274037938.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:28 Heat of formation + Delta-G solvation = 35.578376 kcal Electronic energy + Delta-G solvation = -33750.217952 eV Core-core repulsion = 29652.913967 eV Total energy + Delta-G solvation = -4097.303986 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.61538 -41.31043 -37.66894 -36.44051 -34.96890 -33.82485 -33.41967 -32.01559 -31.57775 -29.04327 -28.49802 -28.29907 -27.63665 -26.47334 -24.64065 -23.39851 -22.19204 -21.43612 -20.79504 -20.01926 -19.72343 -18.65046 -17.45472 -17.05855 -16.84059 -16.38735 -16.31989 -15.35101 -15.18330 -14.73208 -14.28490 -14.18331 -13.99824 -13.94128 -13.57153 -13.33197 -13.21753 -13.10089 -12.90157 -12.77777 -12.58925 -12.41311 -12.39086 -12.28672 -12.17501 -11.93080 -11.84280 -11.59672 -11.34765 -11.03319 -10.98431 -10.76066 -10.68978 -10.66126 -9.97581 -9.90760 -9.76997 -9.71615 -9.58313 -9.23350 -9.03323 -8.72240 -8.46738 -8.02837 -6.00637 -3.99433 1.66515 2.35463 2.64501 3.19086 3.34176 3.36420 3.40636 3.44918 4.12952 4.37976 4.39975 4.48680 4.52593 4.63556 4.70728 4.81316 4.88091 5.01740 5.12168 5.18959 5.25998 5.31514 5.32050 5.37725 5.43838 5.46201 5.54325 5.65105 5.68125 5.74622 5.76709 5.79224 5.85072 5.89445 5.97768 5.99234 6.06444 6.09644 6.17049 6.22660 6.27361 6.40384 6.41733 6.54197 6.72470 7.06182 7.09943 7.15629 7.40431 7.54714 7.83280 8.25736 8.55219 8.61933 9.02670 9.60821 11.12200 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007803 B = 0.006040 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3587.678410 B = 4634.285658 C = 6706.757461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.036 3.964 3 N -0.358 5.358 4 O 0.106 5.894 5 C -0.012 4.012 6 C -0.075 4.075 7 C -0.232 4.232 8 C 0.210 3.790 9 N -0.615 5.615 10 C 0.097 3.903 11 C -0.116 4.116 12 C 0.058 3.942 13 C -0.097 4.097 14 C -0.126 4.126 15 C 0.037 3.963 16 N -0.485 5.485 17 C 0.060 3.940 18 C -0.004 4.004 19 C -0.516 4.516 20 H 0.067 0.933 21 C 0.071 3.929 22 N -0.899 5.899 23 Si 0.876 3.124 24 H -0.278 1.278 25 H -0.264 1.264 26 H -0.288 1.288 27 C 0.515 3.485 28 O -0.521 6.521 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.051 0.949 46 H 0.079 0.921 47 H 0.069 0.931 48 H 0.028 0.972 49 H 0.008 0.992 50 H 0.027 0.973 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.479 -18.688 10.158 21.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.123 4.123 3 N -0.063 5.063 4 O 0.041 5.959 5 C -0.077 4.077 6 C -0.132 4.132 7 C -0.237 4.237 8 C 0.088 3.912 9 N -0.349 5.349 10 C -0.025 4.025 11 C -0.154 4.154 12 C -0.035 4.035 13 C -0.135 4.135 14 C -0.164 4.164 15 C -0.090 4.090 16 N -0.210 5.210 17 C -0.066 4.066 18 C -0.042 4.042 19 C -0.555 4.555 20 H 0.085 0.915 21 C -0.131 4.131 22 N -0.538 5.538 23 Si 0.703 3.297 24 H -0.204 1.204 25 H -0.188 1.188 26 H -0.214 1.214 27 C 0.301 3.699 28 O -0.395 6.395 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.122 0.878 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.069 0.931 46 H 0.098 0.902 47 H 0.087 0.913 48 H 0.046 0.954 49 H 0.026 0.974 50 H 0.045 0.955 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.785 -17.131 9.894 19.978 hybrid contribution -0.689 0.054 -0.349 0.774 sum -3.473 -17.077 9.545 19.869 Atomic orbital electron populations 1.20265 0.86225 1.05043 1.02404 1.23370 0.98832 0.88209 1.01923 1.73877 0.89138 1.23784 1.19474 1.84859 1.21778 1.22134 1.67131 1.24211 0.97843 0.84376 1.01286 1.20363 0.90369 0.98103 1.04380 1.21188 0.91993 0.97712 1.12802 1.19360 1.02782 0.86867 0.82196 1.48493 1.12545 1.60663 1.13204 1.22308 0.88258 0.97196 0.94783 1.22471 0.96428 0.98363 0.98128 1.22119 0.96674 0.95114 0.89641 1.22192 0.94886 0.96822 0.99633 1.22431 0.98360 0.95615 1.00034 1.22904 0.87980 0.97243 1.00921 1.64916 1.19681 1.10892 1.25470 1.22389 0.97990 0.87973 0.98280 1.19512 0.96557 0.94038 0.94075 1.20978 1.36219 1.02656 0.95631 0.91472 1.24951 0.93975 0.95649 0.98481 1.69928 1.37445 1.09907 1.36519 0.86870 0.78357 0.78686 0.85786 1.20374 1.18846 1.21450 1.21219 0.83781 0.78418 0.86522 1.90628 1.22994 1.46949 1.78936 0.90972 0.90737 0.88741 0.89038 0.89777 0.89546 0.89014 0.89300 0.90385 0.90587 0.89736 0.87836 0.91190 0.89980 0.91122 0.91274 0.93061 0.90243 0.91314 0.95367 0.97405 0.95513 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.29 10.34 36.00 0.37 -0.92 16 2 C 0.04 0.64 7.33 -82.10 -0.60 0.04 16 3 N -0.36 -7.23 12.07 33.42 0.40 -6.83 16 4 O 0.11 1.99 11.20 17.18 0.19 2.18 16 5 C -0.01 -0.18 7.49 -35.30 -0.26 -0.45 16 6 C -0.07 -0.73 10.30 36.01 0.37 -0.36 16 7 C -0.23 -3.45 5.90 -104.42 -0.62 -4.07 16 8 C 0.21 2.45 6.17 -5.19 -0.03 2.41 16 9 N -0.61 -7.85 2.91 -173.92 -0.51 -8.35 16 10 C 0.10 1.00 6.58 -2.90 -0.02 0.98 16 11 C -0.12 -1.21 6.26 -25.59 -0.16 -1.37 16 12 C 0.06 0.81 0.63 -132.32 -0.08 0.72 16 13 C -0.10 -1.15 5.84 -25.41 -0.15 -1.30 16 14 C -0.13 -1.67 6.55 -25.21 -0.17 -1.84 16 15 C 0.04 0.62 5.52 -2.58 -0.01 0.61 16 16 N -0.49 -8.37 4.96 -218.03 -1.08 -9.45 16 17 C 0.06 1.27 3.81 -3.82 -0.01 1.26 16 18 C 0.00 -0.10 3.97 -27.88 -0.11 -0.21 16 19 C -0.52 -15.24 9.65 -34.44 -0.33 -15.58 16 20 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 21 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 22 N -0.90 -28.48 13.95 55.43 0.77 -27.71 16 23 Si 0.88 22.42 27.47 -169.99 -4.67 17.75 16 24 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.26 -6.49 6.59 56.52 0.37 -6.12 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 C 0.51 7.94 4.73 -11.29 -0.05 7.88 16 28 O -0.52 -9.42 15.28 5.55 0.08 -9.33 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.09 1.53 6.02 -51.93 -0.31 1.22 16 32 H 0.09 0.92 7.90 -51.93 -0.41 0.51 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.57 7.60 -51.93 -0.39 0.17 16 35 H 0.09 1.08 7.69 -51.93 -0.40 0.68 16 36 H 0.09 0.71 7.64 -51.93 -0.40 0.32 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.90 6.61 -51.93 -0.34 0.56 16 39 H 0.08 0.66 7.94 -51.93 -0.41 0.25 16 40 H 0.10 1.12 8.07 -51.93 -0.42 0.70 16 41 H 0.07 0.78 8.00 -51.93 -0.42 0.37 16 42 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.05 0.98 7.62 -51.92 -0.40 0.59 16 46 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 47 H 0.07 1.43 5.92 -51.93 -0.31 1.13 16 48 H 0.03 0.67 6.82 -51.93 -0.35 0.32 16 49 H 0.01 0.20 7.06 -51.93 -0.37 -0.17 16 50 H 0.03 0.67 7.15 -51.93 -0.37 0.30 16 51 H 0.26 7.79 8.32 -40.82 -0.34 7.46 16 LS Contribution 398.63 15.07 6.01 6.01 Total: -1.00 -36.38 398.63 -9.03 -45.41 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -8.26 Total: 0.45 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -1.97 Total: -10.13 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.41 Total: -52.34 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: 0.28 Total: -7.15 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.67 Total: 17.75 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.38 -9.03 -45.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274037938.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.991 kcal (2) G-P(sol) polarization free energy of solvation -36.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds