Wall clock time and date at job start Wed Apr 1 2020 04:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30174 * 126.80159 * 2 1 4 4 O 1.20926 * 111.60603 * 179.97438 * 3 2 1 5 5 C 1.34037 * 111.56322 * 359.76738 * 4 3 2 6 6 C 1.50704 * 126.77572 * 180.28584 * 5 4 3 7 7 C 1.35442 * 106.45012 * 0.37935 * 5 4 3 8 8 C 1.50706 * 128.01261 * 179.91031 * 7 5 4 9 9 N 1.46503 * 109.46972 * 276.25174 * 8 7 5 10 10 C 1.46901 * 124.37784 * 89.57180 * 9 8 7 11 11 C 1.54748 * 105.51981 * 163.17007 * 10 9 8 12 12 C 1.53432 * 101.46410 * 24.38444 * 11 10 9 13 13 C 1.53707 * 111.12144 * 214.92146 * 12 11 10 14 14 C 1.54815 * 102.78189 * 203.58914 * 13 12 11 15 15 C 1.54077 * 105.20143 * 20.77796 * 14 13 12 16 16 N 1.47190 * 111.46910 * 98.35900 * 12 11 10 17 17 C 1.46899 * 111.00322 * 278.28092 * 16 12 11 18 18 C 1.53002 * 109.47448 * 176.57802 * 17 16 12 19 19 C 1.50696 * 109.47156 * 185.03889 * 18 17 16 20 20 H 1.07997 * 119.99916 * 355.44817 * 19 18 17 21 21 C 1.37873 * 120.00104 * 175.44988 * 19 18 17 22 22 N 1.31511 * 120.00555 * 185.22123 * 21 19 18 23 23 Si 1.86804 * 119.99929 * 5.22414 * 21 19 18 24 24 H 1.48501 * 109.47301 * 84.98643 * 23 21 19 25 25 H 1.48498 * 109.46932 * 324.99069 * 23 21 19 26 26 H 1.48497 * 109.47115 * 204.99154 * 23 21 19 27 27 C 1.34816 * 124.37315 * 269.53042 * 9 8 7 28 28 O 1.21284 * 125.16716 * 1.18023 * 27 9 8 29 29 H 1.08995 * 109.46896 * 275.38568 * 1 2 3 30 30 H 1.09003 * 109.47090 * 35.38339 * 1 2 3 31 31 H 1.09003 * 109.47438 * 155.38281 * 1 2 3 32 32 H 1.08999 * 109.46683 * 270.11346 * 6 5 4 33 33 H 1.09002 * 109.46931 * 30.10993 * 6 5 4 34 34 H 1.09002 * 109.47287 * 150.11398 * 6 5 4 35 35 H 1.08995 * 109.47247 * 156.24706 * 8 7 5 36 36 H 1.08998 * 109.46501 * 36.24781 * 8 7 5 37 37 H 1.09001 * 110.23336 * 44.16273 * 10 9 8 38 38 H 1.08993 * 110.30993 * 282.22090 * 10 9 8 39 39 H 1.09001 * 111.02609 * 266.33585 * 11 10 9 40 40 H 1.09001 * 111.05811 * 142.44923 * 11 10 9 41 41 H 1.08993 * 110.74850 * 85.26819 * 13 12 11 42 42 H 1.08999 * 110.90758 * 321.98329 * 13 12 11 43 43 H 1.08996 * 110.29680 * 261.84362 * 14 13 12 44 44 H 1.08997 * 110.29735 * 139.70985 * 14 13 12 45 45 H 1.09007 * 109.89858 * 241.68412 * 15 14 13 46 46 H 1.08995 * 109.90417 * 120.45543 * 15 14 13 47 47 H 1.09002 * 109.46651 * 56.57691 * 17 16 12 48 48 H 1.08997 * 109.47481 * 296.58110 * 17 16 12 49 49 H 1.08998 * 109.46554 * 65.03616 * 18 17 16 50 50 H 1.09000 * 109.46786 * 305.04142 * 18 17 16 51 51 H 0.96994 * 120.00546 * 185.01109 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7254 0.0005 5 6 3.6024 -0.6067 0.0060 6 6 4.9021 -1.3695 0.0143 7 6 2.3540 -1.1320 0.0005 8 6 1.9590 -2.5864 0.0013 9 7 1.9834 -3.0998 -1.3706 10 6 3.1622 -3.6979 -2.0116 11 6 2.6203 -4.4642 -3.2420 12 6 1.3092 -3.7153 -3.5145 13 6 0.2209 -4.6722 -4.0268 14 6 -0.7337 -3.7257 -4.7947 15 6 0.1093 -2.4772 -5.1182 16 7 1.4705 -2.7191 -4.5860 17 6 2.0610 -1.4783 -4.0668 18 6 2.2916 -0.5011 -5.2213 19 6 3.0095 0.7209 -4.7093 20 1 3.2094 0.8269 -3.6533 21 6 3.4110 1.7038 -5.5889 22 7 4.1266 2.7196 -5.1581 23 14 2.9385 1.5926 -7.3928 24 1 1.5845 2.1710 -7.5864 25 1 2.9338 0.1693 -7.8164 26 1 3.9214 2.3489 -8.2095 27 6 0.9268 -3.0851 -2.2077 28 8 -0.1666 -2.6308 -1.9446 29 1 -0.3633 0.0965 1.0231 30 1 -0.3633 0.8379 -0.5951 31 1 -0.3634 -0.9343 -0.4281 32 1 5.2208 -1.5553 -1.0114 33 1 5.6633 -0.7848 0.5309 34 1 4.7624 -2.3200 0.5292 35 1 0.9540 -2.6897 0.4101 36 1 2.6604 -3.1529 0.6138 37 1 3.6554 -4.3867 -1.3257 38 1 3.8566 -2.9196 -2.3279 39 1 2.4304 -5.5097 -2.9991 40 1 3.3024 -4.3792 -4.0879 41 1 -0.2960 -5.1500 -3.1947 42 1 0.6446 -5.4201 -4.6970 43 1 -1.5837 -3.4561 -4.1680 44 1 -1.0764 -4.1992 -5.7147 45 1 -0.3265 -1.6008 -4.6383 46 1 0.1536 -2.3287 -6.1971 47 1 3.0126 -1.7027 -3.5851 48 1 1.3832 -1.0294 -3.3408 49 1 1.3316 -0.2074 -5.6459 50 1 2.8965 -0.9827 -5.9896 51 1 4.3475 3.4473 -5.7602 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274037938.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:27 Heat of formation + Delta-G solvation = 9.602121 kcal Electronic energy + Delta-G solvation = -33751.344367 eV Core-core repulsion = 29652.913967 eV Total energy + Delta-G solvation = -4098.430401 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.95915 -42.42606 -38.88487 -37.57418 -36.23646 -35.68878 -34.61979 -33.93489 -32.59492 -30.82517 -29.77447 -29.40821 -28.62332 -27.53608 -26.41759 -24.64927 -23.44717 -22.89368 -21.90877 -21.33905 -21.17487 -19.86837 -19.08215 -18.75989 -18.09076 -17.76361 -17.43539 -16.64949 -16.44182 -16.28864 -15.90531 -15.46759 -15.20862 -15.04802 -14.82357 -14.69855 -14.54674 -14.37746 -14.19992 -13.97720 -13.90153 -13.71495 -13.52856 -13.41476 -13.28350 -13.21235 -13.18069 -12.98058 -12.79386 -12.45481 -12.21972 -12.12265 -11.93223 -11.88433 -11.71049 -11.61309 -11.55328 -11.47842 -10.99261 -10.89190 -10.80268 -10.25758 -9.75021 -9.43795 -8.35933 -6.41638 0.46249 1.05656 1.29072 1.30950 1.43248 1.49027 2.19819 2.25309 2.29556 2.89203 2.97628 3.18900 3.40901 3.43759 3.51156 3.68365 3.77986 3.94148 3.97501 4.10285 4.16123 4.24525 4.31426 4.33916 4.35894 4.44270 4.45622 4.53574 4.60974 4.66139 4.67495 4.70734 4.72840 4.77529 4.82396 4.85389 4.90626 4.97012 5.04381 5.07629 5.11299 5.20003 5.22372 5.25537 5.27478 5.36147 5.51252 5.60275 5.85975 5.97117 6.08011 6.18251 6.63941 7.14616 7.22616 7.30694 8.80610 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007803 B = 0.006040 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3587.678410 B = 4634.285658 C = 6706.757461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.016 3.984 3 N -0.408 5.408 4 O 0.072 5.928 5 C -0.012 4.012 6 C -0.074 4.074 7 C -0.234 4.234 8 C 0.210 3.790 9 N -0.611 5.611 10 C 0.090 3.910 11 C -0.108 4.108 12 C 0.047 3.953 13 C -0.088 4.088 14 C -0.120 4.120 15 C 0.031 3.969 16 N -0.481 5.481 17 C 0.089 3.911 18 C 0.004 3.996 19 C -0.527 4.527 20 H 0.016 0.984 21 C 0.011 3.989 22 N -0.945 5.945 23 Si 0.949 3.051 24 H -0.273 1.273 25 H -0.241 1.241 26 H -0.278 1.278 27 C 0.500 3.500 28 O -0.559 6.559 29 H 0.100 0.900 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.131 0.869 35 H 0.088 0.912 36 H 0.140 0.860 37 H 0.129 0.871 38 H 0.056 0.944 39 H 0.124 0.876 40 H 0.102 0.898 41 H 0.082 0.918 42 H 0.111 0.889 43 H 0.058 0.942 44 H 0.096 0.904 45 H 0.012 0.988 46 H 0.081 0.919 47 H 0.068 0.932 48 H -0.011 1.011 49 H 0.003 0.997 50 H 0.034 0.966 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.748 -23.431 9.305 25.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.143 4.143 3 N -0.118 5.118 4 O 0.012 5.988 5 C -0.077 4.077 6 C -0.131 4.131 7 C -0.240 4.240 8 C 0.088 3.912 9 N -0.343 5.343 10 C -0.031 4.031 11 C -0.145 4.145 12 C -0.047 4.047 13 C -0.127 4.127 14 C -0.158 4.158 15 C -0.096 4.096 16 N -0.205 5.205 17 C -0.039 4.039 18 C -0.034 4.034 19 C -0.565 4.565 20 H 0.035 0.965 21 C -0.187 4.187 22 N -0.586 5.586 23 Si 0.772 3.228 24 H -0.198 1.198 25 H -0.165 1.165 26 H -0.203 1.203 27 C 0.287 3.713 28 O -0.436 6.436 29 H 0.119 0.881 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.149 0.851 35 H 0.107 0.893 36 H 0.157 0.843 37 H 0.147 0.853 38 H 0.074 0.926 39 H 0.143 0.857 40 H 0.121 0.879 41 H 0.100 0.900 42 H 0.130 0.870 43 H 0.076 0.924 44 H 0.115 0.885 45 H 0.031 0.969 46 H 0.100 0.900 47 H 0.087 0.913 48 H 0.008 0.992 49 H 0.021 0.979 50 H 0.052 0.948 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.006 -21.915 9.054 23.797 hybrid contribution -0.898 1.583 0.010 1.820 sum -2.904 -20.332 9.064 22.449 Atomic orbital electron populations 1.20239 0.85530 1.03762 1.03692 1.23934 0.99744 0.89298 1.01373 1.73852 0.90040 1.25712 1.22192 1.84768 1.21385 1.24654 1.68039 1.25230 1.00106 0.82989 0.99356 1.20680 0.87963 0.99443 1.04971 1.21609 0.91236 0.98798 1.12310 1.19654 1.04094 0.85110 0.82345 1.48616 1.12631 1.59719 1.13384 1.22583 0.87064 0.97480 0.95988 1.22579 0.93956 0.99940 0.98046 1.22420 0.99754 0.94536 0.87946 1.22263 0.93725 0.96407 1.00268 1.22395 0.97677 0.94345 1.01392 1.22964 0.88319 0.97831 1.00531 1.64894 1.19843 1.09059 1.26744 1.21862 0.97376 0.88980 0.95691 1.19366 0.95460 0.93139 0.95403 1.21182 1.36835 1.05056 0.93452 0.96514 1.25958 0.93631 0.94966 1.04123 1.70083 1.38754 1.10977 1.38744 0.85704 0.78177 0.80035 0.78883 1.19848 1.16472 1.20312 1.21601 0.83900 0.78274 0.87536 1.90603 1.24769 1.48521 1.79730 0.88109 0.92934 0.89128 0.89238 0.88581 0.85093 0.89323 0.84271 0.85281 0.92555 0.85731 0.87904 0.89973 0.87033 0.92364 0.88534 0.96947 0.90027 0.91322 0.99246 0.97905 0.94768 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.55 10.34 71.23 0.74 -1.81 16 2 C 0.02 0.59 7.33 43.58 0.32 0.91 16 3 N -0.41 -18.02 12.07 -49.55 -0.60 -18.62 16 4 O 0.07 2.95 11.20 71.66 0.80 3.75 16 5 C -0.01 -0.37 7.49 25.04 0.19 -0.18 16 6 C -0.07 -1.29 10.30 71.24 0.73 -0.56 16 7 C -0.23 -7.05 5.90 -19.73 -0.12 -7.17 16 8 C 0.21 4.43 6.17 85.63 0.53 4.96 16 9 N -0.61 -14.26 2.91 -822.51 -2.40 -16.66 16 10 C 0.09 1.51 6.58 86.90 0.57 2.08 16 11 C -0.11 -1.77 6.26 31.34 0.20 -1.58 16 12 C 0.05 1.18 0.63 2.90 0.00 1.19 16 13 C -0.09 -1.78 5.84 31.45 0.18 -1.60 16 14 C -0.12 -2.95 6.55 31.58 0.21 -2.74 16 15 C 0.03 1.05 5.52 86.43 0.48 1.53 16 16 N -0.48 -16.19 4.96 -843.72 -4.19 -20.38 16 17 C 0.09 3.86 3.81 86.30 0.33 4.18 16 18 C 0.00 0.21 3.97 29.85 0.12 0.32 16 19 C -0.53 -32.65 9.65 25.60 0.25 -32.41 16 20 H 0.02 1.16 7.99 -2.91 -0.02 1.14 16 21 C 0.01 0.65 5.47 84.65 0.46 1.12 16 22 N -0.95 -62.19 13.95 21.45 0.30 -61.89 16 23 Si 0.95 46.66 27.47 68.60 1.88 48.54 16 24 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 25 H -0.24 -10.93 6.59 99.48 0.66 -10.28 16 26 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 27 C 0.50 14.98 4.73 87.44 0.41 15.39 16 28 O -0.56 -20.64 15.28 -3.04 -0.05 -20.69 16 29 H 0.10 2.73 8.14 -2.39 -0.02 2.72 16 30 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.09 3.14 6.02 -2.39 -0.01 3.13 16 32 H 0.09 1.67 7.90 -2.39 -0.02 1.66 16 33 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.13 1.10 7.60 -2.39 -0.02 1.09 16 35 H 0.09 1.96 7.69 -2.39 -0.02 1.95 16 36 H 0.14 1.53 7.64 -2.39 -0.02 1.52 16 37 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.06 1.20 6.61 -2.39 -0.02 1.18 16 39 H 0.12 1.13 7.94 -2.39 -0.02 1.11 16 40 H 0.10 1.79 8.07 -2.39 -0.02 1.77 16 41 H 0.08 1.51 8.00 -2.39 -0.02 1.49 16 42 H 0.11 1.63 8.07 -2.39 -0.02 1.61 16 43 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.01 0.49 7.62 -2.38 -0.02 0.47 16 46 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 47 H 0.07 2.94 5.92 -2.39 -0.01 2.93 16 48 H -0.01 -0.55 6.82 -2.39 -0.02 -0.56 16 49 H 0.00 0.14 7.06 -2.39 -0.02 0.12 16 50 H 0.03 1.69 7.15 -2.39 -0.02 1.67 16 51 H 0.27 16.32 8.32 -92.71 -0.77 15.55 16 Total: -1.00 -88.86 398.63 2.23 -86.63 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.88 Total: 15.67 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: 5.60 Total: -16.36 kcal Atomic # 7 Polarization: -110.67 SS G_CDS: -6.88 Total: -117.55 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: 0.76 Total: -16.94 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.88 Total: 48.54 kcal Total: -88.86 2.23 -86.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274037938.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.235 kcal (2) G-P(sol) polarization free energy of solvation -88.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds