Wall clock time and date at job start Wed Apr 1 2020 04:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30171 * 126.80178 * 2 1 4 4 O 1.20923 * 111.60389 * 179.97438 * 3 2 1 5 5 C 1.34034 * 111.56833 * 0.02562 * 4 3 2 6 6 C 1.50695 * 126.78135 * 180.02562 * 5 4 3 7 7 C 1.35451 * 106.44611 * 359.97438 * 5 4 3 8 8 C 1.50701 * 128.00983 * 180.02562 * 7 5 4 9 9 N 1.46501 * 109.47069 * 89.99667 * 8 7 5 10 10 C 1.46879 * 124.37179 * 90.00117 * 9 8 7 11 11 C 1.54706 * 105.52280 * 196.78669 * 10 9 8 12 12 C 1.53628 * 101.51137 * 335.47117 * 11 10 9 13 13 C 1.53602 * 110.84320 * 144.61680 * 12 11 10 14 14 C 1.55158 * 102.66089 * 99.49828 * 13 12 11 15 15 N 1.48626 * 103.36469 * 36.57342 * 14 13 12 16 16 C 1.46900 * 111.00247 * 200.84829 * 15 14 13 17 17 C 1.53001 * 109.46996 * 287.44426 * 16 15 14 18 18 C 1.50700 * 109.46929 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99872 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00193 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99861 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00092 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47491 * 60.00012 * 22 20 18 24 24 H 1.48498 * 109.46995 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47044 * 300.00046 * 22 20 18 26 26 C 1.48181 * 105.85891 * 321.38992 * 15 14 13 27 27 C 1.34754 * 124.37320 * 269.70332 * 9 8 7 28 28 O 1.21280 * 125.13453 * 359.02455 * 27 9 8 29 29 H 1.09003 * 109.46685 * 90.01751 * 1 2 3 30 30 H 1.09000 * 109.47092 * 210.01902 * 1 2 3 31 31 H 1.09002 * 109.46993 * 330.02722 * 1 2 3 32 32 H 1.09002 * 109.47010 * 359.97322 * 6 5 4 33 33 H 1.08996 * 109.47599 * 119.97086 * 6 5 4 34 34 H 1.08996 * 109.47212 * 239.97649 * 6 5 4 35 35 H 1.08997 * 109.47501 * 209.99941 * 8 7 5 36 36 H 1.08995 * 109.47035 * 330.00032 * 8 7 5 37 37 H 1.08996 * 110.23980 * 315.80668 * 10 9 8 38 38 H 1.09010 * 110.23763 * 77.77882 * 10 9 8 39 39 H 1.09001 * 111.01142 * 93.52160 * 11 10 9 40 40 H 1.08997 * 111.02304 * 217.41484 * 11 10 9 41 41 H 1.09002 * 110.76909 * 217.79165 * 13 12 11 42 42 H 1.08999 * 110.77269 * 341.20350 * 13 12 11 43 43 H 1.08998 * 110.64641 * 278.10411 * 14 13 12 44 44 H 1.09007 * 110.77999 * 155.10981 * 14 13 12 45 45 H 1.08993 * 109.46767 * 47.44671 * 16 15 14 46 46 H 1.09002 * 109.46933 * 167.44252 * 16 15 14 47 47 H 1.08998 * 109.47111 * 299.99734 * 17 16 15 48 48 H 1.09001 * 109.47028 * 60.00488 * 17 16 15 49 49 H 0.96998 * 120.00090 * 180.02562 * 21 20 18 50 50 H 1.09005 * 110.01991 * 265.81930 * 26 15 14 51 51 H 1.08998 * 110.02311 * 144.42120 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6025 -0.6068 0.0004 6 6 4.9021 -1.3696 0.0014 7 6 2.3540 -1.1320 0.0003 8 6 1.9591 -2.5864 0.0006 9 7 1.8309 -3.0572 1.3820 10 6 0.5884 -3.0060 2.1635 11 6 1.0189 -3.1896 3.6381 12 6 2.3500 -3.9397 3.4777 13 6 3.3547 -3.5067 4.5559 14 6 3.2461 -4.6489 5.6004 15 7 3.0491 -5.8616 4.7640 16 6 2.4440 -6.9480 5.5461 17 6 3.4808 -7.5156 6.5176 18 6 2.8599 -8.6296 7.3204 19 1 1.8290 -8.9055 7.1540 20 6 3.6081 -9.2974 8.2666 21 7 4.8636 -8.9618 8.4689 22 14 2.8387 -10.6788 9.2611 23 1 2.3791 -11.7526 8.3440 24 1 3.8449 -11.2297 10.2041 25 1 1.6801 -10.1519 10.0263 26 6 2.1597 -5.4476 3.6535 27 6 2.8362 -3.5985 2.0976 28 8 3.9639 -3.7805 1.6901 29 1 -0.3633 -0.0003 -1.0277 30 1 -0.3633 -0.8898 0.5141 31 1 -0.3633 0.8902 0.5134 32 1 5.7357 -0.6672 0.0018 33 1 4.9549 -1.9964 0.8915 34 1 4.9560 -1.9967 -0.8884 35 1 1.0051 -2.7040 -0.5133 36 1 2.7228 -3.1704 -0.5129 37 1 0.0989 -2.0412 2.0309 38 1 -0.0799 -3.8131 1.8627 39 1 1.1696 -2.2257 4.1242 40 1 0.2940 -3.7925 4.1850 41 1 4.3630 -3.4529 4.1453 42 1 3.0635 -2.5524 4.9948 43 1 2.3893 -4.4905 6.2553 44 1 4.1639 -4.7288 6.1830 45 1 1.5935 -6.5614 6.1074 46 1 2.1071 -7.7362 4.8729 47 1 4.3314 -7.9022 5.9562 48 1 3.8177 -6.7273 7.1908 49 1 5.3901 -9.4319 9.1342 50 1 1.1218 -5.6658 3.9054 51 1 2.4391 -5.9682 2.7376 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274038355.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:34 Heat of formation + Delta-G solvation = 28.897175 kcal Electronic energy + Delta-G solvation = -31353.634212 eV Core-core repulsion = 27256.040507 eV Total energy + Delta-G solvation = -4097.593704 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.20462 -41.23398 -38.09692 -36.67983 -35.56120 -34.13340 -33.56412 -32.39683 -30.66143 -29.10236 -28.93937 -28.42999 -27.96894 -26.75431 -24.79197 -23.28536 -22.50514 -21.79665 -21.04317 -20.36127 -19.90483 -19.06152 -17.97657 -17.31315 -16.67401 -16.45902 -16.27477 -15.72252 -15.14395 -14.74569 -14.51198 -14.43957 -14.34934 -14.12120 -13.91413 -13.74851 -13.52268 -13.48323 -13.25526 -12.88552 -12.81744 -12.64802 -12.62644 -12.35723 -12.26650 -12.01274 -11.96632 -11.77192 -11.24645 -11.21139 -11.08855 -10.95445 -10.81804 -10.62470 -10.53818 -10.29460 -9.82403 -9.75340 -9.51214 -9.35848 -9.12654 -9.01124 -8.32489 -7.84059 -5.98042 -4.00916 1.13489 1.76015 2.43363 2.82254 2.90773 3.33480 3.38227 3.40063 3.81285 4.02311 4.13270 4.15584 4.37955 4.41557 4.44416 4.58137 4.61399 4.80250 4.89647 4.94407 5.00019 5.03393 5.10578 5.15772 5.17817 5.28341 5.29599 5.35576 5.37503 5.44248 5.52511 5.54384 5.58512 5.69691 5.73932 5.74551 5.85446 5.89975 5.98917 6.11351 6.19271 6.34205 6.40245 6.42709 6.84068 6.95268 7.36855 7.46635 7.76097 7.90372 7.98213 8.04744 8.09811 8.43872 9.06263 9.62522 11.13213 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025744 B = 0.002095 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.350865 B =13358.855303 C =13820.719142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.031 3.969 3 N -0.370 5.370 4 O 0.093 5.907 5 C 0.002 3.998 6 C -0.085 4.085 7 C -0.234 4.234 8 C 0.208 3.792 9 N -0.621 5.621 10 C 0.103 3.897 11 C -0.124 4.124 12 C -0.104 4.104 13 C -0.103 4.103 14 C 0.043 3.957 15 N -0.512 5.512 16 C 0.055 3.945 17 C 0.031 3.969 18 C -0.523 4.523 19 H 0.053 0.947 20 C 0.058 3.942 21 N -0.892 5.892 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.278 1.278 26 C 0.063 3.937 27 C 0.539 3.461 28 O -0.512 6.512 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.043 0.957 44 H 0.088 0.912 45 H 0.023 0.977 46 H 0.060 0.940 47 H 0.025 0.975 48 H 0.016 0.984 49 H 0.261 0.739 50 H 0.050 0.950 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.658 18.689 -18.734 28.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.129 4.129 3 N -0.078 5.078 4 O 0.030 5.970 5 C -0.062 4.062 6 C -0.142 4.142 7 C -0.239 4.239 8 C 0.085 3.915 9 N -0.355 5.355 10 C -0.020 4.020 11 C -0.161 4.161 12 C -0.108 4.108 13 C -0.141 4.141 14 C -0.085 4.085 15 N -0.236 5.236 16 C -0.072 4.072 17 C -0.007 4.007 18 C -0.562 4.562 19 H 0.071 0.929 20 C -0.143 4.143 21 N -0.531 5.531 22 Si 0.720 3.280 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.066 4.066 27 C 0.327 3.673 28 O -0.386 6.386 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.128 0.872 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.062 0.938 44 H 0.107 0.893 45 H 0.041 0.959 46 H 0.078 0.922 47 H 0.043 0.957 48 H 0.034 0.966 49 H 0.071 0.929 50 H 0.068 0.932 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.600 19.667 -19.119 28.745 hybrid contribution -1.400 -1.184 0.885 2.036 sum -9.999 18.483 -18.233 27.822 Atomic orbital electron populations 1.20218 0.86060 1.03771 1.03417 1.23418 0.98771 0.88469 1.02236 1.73844 0.89302 1.23957 1.20662 1.84823 1.21650 1.22696 1.67821 1.24507 0.98615 0.83497 0.99579 1.20585 0.89324 0.98575 1.05712 1.21307 0.91945 0.97911 1.12765 1.19368 1.02833 0.87039 0.82228 1.48467 1.11724 1.61973 1.13353 1.22190 0.86494 1.02186 0.91159 1.22770 0.96332 1.01513 0.95524 1.21546 0.96858 0.98087 0.94305 1.22447 0.99192 0.98179 0.94313 1.23230 1.01870 0.88655 0.94735 1.64977 1.42915 1.06614 1.09123 1.22526 0.97366 0.91749 0.95561 1.19026 0.93825 0.95260 0.92575 1.21149 0.97657 1.17543 1.19870 0.92913 1.24994 0.94845 0.97290 0.97177 1.69964 1.07478 1.41499 1.34160 0.86664 0.78886 0.82470 0.79983 1.20247 1.21281 1.20335 1.22618 0.96202 0.90339 0.97411 1.20431 0.84284 0.75556 0.87041 1.90656 1.19265 1.53645 1.75020 0.90060 0.90134 0.90422 0.90135 0.87240 0.89067 0.89046 0.88592 0.90588 0.90736 0.89809 0.88858 0.89687 0.90965 0.93837 0.89346 0.95886 0.92156 0.95674 0.96570 0.92932 0.93156 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.39 36.01 0.37 -0.08 16 2 C 0.03 0.29 7.33 -82.10 -0.60 -0.31 16 3 N -0.37 -4.36 12.07 33.42 0.40 -3.96 16 4 O 0.09 1.06 11.20 17.19 0.19 1.26 16 5 C 0.00 0.02 7.49 -35.31 -0.26 -0.24 16 6 C -0.08 -0.72 10.23 36.00 0.37 -0.35 16 7 C -0.23 -2.18 5.90 -104.42 -0.62 -2.79 16 8 C 0.21 1.65 6.27 -5.19 -0.03 1.62 16 9 N -0.62 -5.75 2.93 -173.89 -0.51 -6.26 16 10 C 0.10 0.71 7.36 -2.94 -0.02 0.69 16 11 C -0.12 -1.04 6.24 -25.51 -0.16 -1.20 16 12 C -0.10 -1.25 0.77 -155.24 -0.12 -1.37 16 13 C -0.10 -1.36 6.20 -25.28 -0.16 -1.51 16 14 C 0.04 0.69 5.92 -1.73 -0.01 0.68 16 15 N -0.51 -9.31 5.26 -230.62 -1.21 -10.52 16 16 C 0.06 1.14 4.65 -3.82 -0.02 1.13 16 17 C 0.03 0.80 5.06 -27.88 -0.14 0.66 16 18 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 19 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 22 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 C 0.06 0.90 6.03 -3.12 -0.02 0.88 16 27 C 0.54 6.74 6.63 -11.21 -0.07 6.66 16 28 O -0.51 -7.84 14.93 5.56 0.08 -7.76 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.35 6.48 -51.93 -0.34 0.01 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.11 1.17 5.86 -51.93 -0.30 0.86 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.80 7.86 -51.93 -0.41 0.39 16 37 H 0.08 0.41 6.48 -51.93 -0.34 0.07 16 38 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 39 H 0.08 0.66 7.50 -51.93 -0.39 0.27 16 40 H 0.09 0.72 7.41 -51.93 -0.38 0.34 16 41 H 0.08 1.25 7.54 -51.93 -0.39 0.86 16 42 H 0.07 0.80 7.44 -51.93 -0.39 0.41 16 43 H 0.04 0.67 7.80 -51.93 -0.41 0.27 16 44 H 0.09 1.56 7.82 -51.93 -0.41 1.15 16 45 H 0.02 0.46 7.83 -51.93 -0.41 0.06 16 46 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 47 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.02 0.44 7.38 -51.93 -0.38 0.06 16 49 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 50 H 0.05 0.65 6.93 -51.93 -0.36 0.29 16 51 H 0.07 1.13 7.73 -51.93 -0.40 0.73 16 LS Contribution 404.77 15.07 6.10 6.10 Total: -1.00 -33.84 404.77 -9.35 -43.19 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -8.22 Total: -3.39 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: -1.90 Total: -9.04 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -0.58 Total: -46.94 kcal Atomic # 8 Polarization: -6.78 SS G_CDS: 0.28 Total: -6.50 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.84 -9.35 -43.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038355.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.092 kcal (2) G-P(sol) polarization free energy of solvation -33.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds