Wall clock time and date at job start Wed Apr 1 2020 04:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30171 * 126.80178 * 2 1 4 4 O 1.20923 * 111.60389 * 179.97438 * 3 2 1 5 5 C 1.34034 * 111.56833 * 0.02562 * 4 3 2 6 6 C 1.50695 * 126.78135 * 180.02562 * 5 4 3 7 7 C 1.35451 * 106.44611 * 359.97438 * 5 4 3 8 8 C 1.50701 * 128.00983 * 180.02562 * 7 5 4 9 9 N 1.46501 * 109.47069 * 89.99667 * 8 7 5 10 10 C 1.46879 * 124.37179 * 90.00117 * 9 8 7 11 11 C 1.54706 * 105.52280 * 196.78669 * 10 9 8 12 12 C 1.53628 * 101.51137 * 335.47117 * 11 10 9 13 13 C 1.53602 * 110.84320 * 144.61680 * 12 11 10 14 14 C 1.55158 * 102.66089 * 99.49828 * 13 12 11 15 15 N 1.48626 * 103.36469 * 36.57342 * 14 13 12 16 16 C 1.46900 * 111.00247 * 200.84829 * 15 14 13 17 17 C 1.53001 * 109.46996 * 287.44426 * 16 15 14 18 18 C 1.50700 * 109.46929 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99872 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00193 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99861 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00092 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47491 * 60.00012 * 22 20 18 24 24 H 1.48498 * 109.46995 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47044 * 300.00046 * 22 20 18 26 26 C 1.48181 * 105.85891 * 321.38992 * 15 14 13 27 27 C 1.34754 * 124.37320 * 269.70332 * 9 8 7 28 28 O 1.21280 * 125.13453 * 359.02455 * 27 9 8 29 29 H 1.09003 * 109.46685 * 90.01751 * 1 2 3 30 30 H 1.09000 * 109.47092 * 210.01902 * 1 2 3 31 31 H 1.09002 * 109.46993 * 330.02722 * 1 2 3 32 32 H 1.09002 * 109.47010 * 359.97322 * 6 5 4 33 33 H 1.08996 * 109.47599 * 119.97086 * 6 5 4 34 34 H 1.08996 * 109.47212 * 239.97649 * 6 5 4 35 35 H 1.08997 * 109.47501 * 209.99941 * 8 7 5 36 36 H 1.08995 * 109.47035 * 330.00032 * 8 7 5 37 37 H 1.08996 * 110.23980 * 315.80668 * 10 9 8 38 38 H 1.09010 * 110.23763 * 77.77882 * 10 9 8 39 39 H 1.09001 * 111.01142 * 93.52160 * 11 10 9 40 40 H 1.08997 * 111.02304 * 217.41484 * 11 10 9 41 41 H 1.09002 * 110.76909 * 217.79165 * 13 12 11 42 42 H 1.08999 * 110.77269 * 341.20350 * 13 12 11 43 43 H 1.08998 * 110.64641 * 278.10411 * 14 13 12 44 44 H 1.09007 * 110.77999 * 155.10981 * 14 13 12 45 45 H 1.08993 * 109.46767 * 47.44671 * 16 15 14 46 46 H 1.09002 * 109.46933 * 167.44252 * 16 15 14 47 47 H 1.08998 * 109.47111 * 299.99734 * 17 16 15 48 48 H 1.09001 * 109.47028 * 60.00488 * 17 16 15 49 49 H 0.96998 * 120.00090 * 180.02562 * 21 20 18 50 50 H 1.09005 * 110.01991 * 265.81930 * 26 15 14 51 51 H 1.08998 * 110.02311 * 144.42120 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6025 -0.6068 0.0004 6 6 4.9021 -1.3696 0.0014 7 6 2.3540 -1.1320 0.0003 8 6 1.9591 -2.5864 0.0006 9 7 1.8309 -3.0572 1.3820 10 6 0.5884 -3.0060 2.1635 11 6 1.0189 -3.1896 3.6381 12 6 2.3500 -3.9397 3.4777 13 6 3.3547 -3.5067 4.5559 14 6 3.2461 -4.6489 5.6004 15 7 3.0491 -5.8616 4.7640 16 6 2.4440 -6.9480 5.5461 17 6 3.4808 -7.5156 6.5176 18 6 2.8599 -8.6296 7.3204 19 1 1.8290 -8.9055 7.1540 20 6 3.6081 -9.2974 8.2666 21 7 4.8636 -8.9618 8.4689 22 14 2.8387 -10.6788 9.2611 23 1 2.3791 -11.7526 8.3440 24 1 3.8449 -11.2297 10.2041 25 1 1.6801 -10.1519 10.0263 26 6 2.1597 -5.4476 3.6535 27 6 2.8362 -3.5985 2.0976 28 8 3.9639 -3.7805 1.6901 29 1 -0.3633 -0.0003 -1.0277 30 1 -0.3633 -0.8898 0.5141 31 1 -0.3633 0.8902 0.5134 32 1 5.7357 -0.6672 0.0018 33 1 4.9549 -1.9964 0.8915 34 1 4.9560 -1.9967 -0.8884 35 1 1.0051 -2.7040 -0.5133 36 1 2.7228 -3.1704 -0.5129 37 1 0.0989 -2.0412 2.0309 38 1 -0.0799 -3.8131 1.8627 39 1 1.1696 -2.2257 4.1242 40 1 0.2940 -3.7925 4.1850 41 1 4.3630 -3.4529 4.1453 42 1 3.0635 -2.5524 4.9948 43 1 2.3893 -4.4905 6.2553 44 1 4.1639 -4.7288 6.1830 45 1 1.5935 -6.5614 6.1074 46 1 2.1071 -7.7362 4.8729 47 1 4.3314 -7.9022 5.9562 48 1 3.8177 -6.7273 7.1908 49 1 5.3901 -9.4319 9.1342 50 1 1.1218 -5.6658 3.9054 51 1 2.4391 -5.9682 2.7376 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274038355.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:33 Heat of formation + Delta-G solvation = 7.105136 kcal Electronic energy + Delta-G solvation = -31354.579185 eV Core-core repulsion = 27256.040507 eV Total energy + Delta-G solvation = -4098.538678 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.94343 -42.14628 -39.28008 -37.55162 -36.45855 -35.46771 -34.69647 -33.81856 -31.86120 -30.45850 -29.70470 -29.27916 -28.89468 -27.50755 -26.48549 -24.37168 -23.39075 -23.23141 -21.91837 -21.47594 -21.04341 -19.97848 -18.74239 -18.54425 -18.05884 -17.45398 -17.22535 -16.72804 -16.50298 -16.15192 -15.83989 -15.48261 -15.20722 -15.09355 -14.93048 -14.59101 -14.33442 -14.16666 -14.09146 -13.97393 -13.85048 -13.66744 -13.51831 -13.41983 -13.31048 -13.09257 -12.99383 -12.91720 -12.77019 -12.62466 -12.44078 -12.36965 -11.98409 -11.84539 -11.71445 -11.59730 -11.35725 -11.22961 -10.99878 -10.63543 -10.53257 -10.25627 -9.74027 -9.24355 -8.18076 -6.30143 0.37859 1.07073 1.41259 1.44898 1.50738 1.52763 2.09965 2.19056 2.41683 3.09309 3.15134 3.19384 3.23589 3.44447 3.48851 3.57168 3.76125 3.91618 3.98464 4.03342 4.24869 4.31397 4.39729 4.42066 4.44002 4.49445 4.52576 4.55155 4.58664 4.66291 4.69367 4.70782 4.74933 4.78464 4.79281 4.87990 4.92684 5.00536 5.02588 5.10728 5.11516 5.12828 5.15293 5.26841 5.46895 5.58530 5.64506 5.80136 6.04653 6.05827 6.15982 6.32922 6.87571 7.16744 7.23996 7.39153 8.93985 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.025744 B = 0.002095 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.350865 B =13358.855303 C =13820.719142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.037 3.963 3 N -0.402 5.402 4 O 0.071 5.929 5 C -0.010 4.010 6 C -0.080 4.080 7 C -0.235 4.235 8 C 0.207 3.793 9 N -0.612 5.612 10 C 0.100 3.900 11 C -0.117 4.117 12 C -0.103 4.103 13 C -0.094 4.094 14 C 0.043 3.957 15 N -0.541 5.541 16 C 0.075 3.925 17 C 0.038 3.962 18 C -0.543 4.543 19 H 0.064 0.936 20 C -0.002 4.002 21 N -0.933 5.933 22 Si 0.968 3.032 23 H -0.266 1.266 24 H -0.285 1.285 25 H -0.264 1.264 26 C 0.067 3.933 27 C 0.530 3.470 28 O -0.551 6.551 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.127 0.873 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.060 0.940 42 H 0.099 0.901 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.035 0.965 46 H 0.061 0.939 47 H -0.015 1.015 48 H -0.009 1.009 49 H 0.263 0.737 50 H 0.073 0.927 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.526 18.907 -19.376 30.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.123 4.123 3 N -0.114 5.114 4 O 0.013 5.987 5 C -0.074 4.074 6 C -0.137 4.137 7 C -0.240 4.240 8 C 0.085 3.915 9 N -0.345 5.345 10 C -0.021 4.021 11 C -0.155 4.155 12 C -0.107 4.107 13 C -0.132 4.132 14 C -0.084 4.084 15 N -0.265 5.265 16 C -0.053 4.053 17 C 0.000 4.000 18 C -0.581 4.581 19 H 0.082 0.918 20 C -0.200 4.200 21 N -0.573 5.573 22 Si 0.792 3.208 23 H -0.191 1.191 24 H -0.211 1.211 25 H -0.189 1.189 26 C -0.061 4.061 27 C 0.318 3.682 28 O -0.428 6.428 29 H 0.115 0.885 30 H 0.122 0.878 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.145 0.855 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.126 0.874 41 H 0.079 0.921 42 H 0.117 0.883 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.053 0.947 46 H 0.080 0.920 47 H 0.003 0.997 48 H 0.009 0.991 49 H 0.072 0.928 50 H 0.091 0.909 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.492 19.906 -19.783 30.720 hybrid contribution -0.144 -1.224 1.045 1.616 sum -12.637 18.682 -18.738 29.323 Atomic orbital electron populations 1.20422 0.83355 1.04940 1.04827 1.24030 1.00363 0.87732 1.00177 1.73841 0.89637 1.25296 1.22596 1.84789 1.21937 1.23330 1.68685 1.24846 0.99611 0.83341 0.99608 1.20537 0.89462 0.98511 1.05169 1.21509 0.91551 0.98550 1.12353 1.19562 1.04476 0.85855 0.81630 1.48512 1.11754 1.60438 1.13769 1.22464 0.85530 1.04560 0.89554 1.22804 0.94066 1.01541 0.97083 1.21496 0.98615 0.96804 0.93736 1.22351 0.98722 0.98204 0.93961 1.23177 1.00857 0.89087 0.95320 1.64790 1.44522 1.07100 1.10103 1.22121 0.95703 0.92737 0.94747 1.18859 0.93974 0.94358 0.92801 1.21605 0.98289 1.18078 1.20172 0.91784 1.26018 0.95268 1.00186 0.98485 1.70125 1.09193 1.43030 1.35001 0.85459 0.78146 0.78896 0.78274 1.19108 1.21088 1.18850 1.22594 0.96443 0.91946 0.95124 1.20552 0.84318 0.75813 0.87511 1.90642 1.21045 1.55416 1.75734 0.88454 0.87795 0.90363 0.89036 0.89370 0.87875 0.85498 0.89396 0.88064 0.88409 0.88833 0.87423 0.92092 0.88292 0.92707 0.92331 0.94706 0.92007 0.99702 0.99063 0.92835 0.90855 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.39 71.24 0.74 0.11 16 2 C 0.04 0.62 7.33 43.58 0.32 0.94 16 3 N -0.40 -9.18 12.07 -49.56 -0.60 -9.78 16 4 O 0.07 1.64 11.20 71.69 0.80 2.45 16 5 C -0.01 -0.19 7.49 25.04 0.19 -0.01 16 6 C -0.08 -1.38 10.23 71.23 0.73 -0.65 16 7 C -0.23 -3.93 5.90 -19.74 -0.12 -4.05 16 8 C 0.21 2.72 6.27 85.63 0.54 3.26 16 9 N -0.61 -9.60 2.93 -822.47 -2.41 -12.01 16 10 C 0.10 0.91 7.36 86.89 0.64 1.55 16 11 C -0.12 -1.51 6.24 31.39 0.20 -1.31 16 12 C -0.10 -2.29 0.77 -52.66 -0.04 -2.33 16 13 C -0.09 -2.46 6.20 31.54 0.20 -2.27 16 14 C 0.04 1.43 5.92 86.71 0.51 1.94 16 15 N -0.54 -19.98 5.26 -883.55 -4.64 -24.63 16 16 C 0.07 3.12 4.65 86.30 0.40 3.52 16 17 C 0.04 2.05 5.06 29.85 0.15 2.20 16 18 C -0.54 -31.05 9.11 25.60 0.23 -30.81 16 19 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 20 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 21 N -0.93 -57.98 13.29 21.45 0.28 -57.70 16 22 Si 0.97 44.24 29.54 68.60 2.03 46.27 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 24 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 25 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 26 C 0.07 1.84 6.03 86.06 0.52 2.36 16 27 C 0.53 12.70 6.63 87.52 0.58 13.28 16 28 O -0.55 -17.28 14.93 -3.03 -0.05 -17.33 16 29 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.10 0.33 6.48 -2.39 -0.02 0.32 16 31 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.09 1.99 5.86 -2.39 -0.01 1.97 16 34 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.09 1.34 7.86 -2.39 -0.02 1.32 16 37 H 0.10 0.49 6.48 -2.39 -0.02 0.47 16 38 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 39 H 0.09 1.08 7.50 -2.39 -0.02 1.06 16 40 H 0.11 1.15 7.41 -2.39 -0.02 1.13 16 41 H 0.06 1.89 7.54 -2.39 -0.02 1.87 16 42 H 0.10 2.03 7.44 -2.39 -0.02 2.01 16 43 H 0.05 1.67 7.80 -2.39 -0.02 1.65 16 44 H 0.06 2.23 7.82 -2.38 -0.02 2.21 16 45 H 0.03 1.36 7.83 -2.39 -0.02 1.35 16 46 H 0.06 2.54 8.08 -2.39 -0.02 2.52 16 47 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 48 H -0.01 -0.53 7.38 -2.39 -0.02 -0.54 16 49 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 50 H 0.07 1.68 6.93 -2.38 -0.02 1.66 16 51 H 0.06 1.86 7.73 -2.39 -0.02 1.84 16 Total: -1.00 -77.96 404.77 2.59 -75.36 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 0.93 Total: 9.28 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: 6.25 Total: -11.92 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -7.37 Total: -104.11 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.76 Total: -14.88 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -77.96 2.59 -75.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038355.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.469 kcal (2) G-P(sol) polarization free energy of solvation -77.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds