Wall clock time and date at job start Wed Apr 1 2020 04:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30172 * 126.80375 * 2 1 4 4 O 1.20915 * 111.60318 * 180.25289 * 3 2 1 5 5 C 1.34041 * 111.56870 * 359.74937 * 4 3 2 6 6 C 1.50701 * 126.77531 * 180.02562 * 5 4 3 7 7 C 1.35450 * 106.44740 * 359.97438 * 5 4 3 8 8 C 1.50693 * 128.01064 * 179.97438 * 7 5 4 9 9 N 1.46496 * 109.47259 * 90.00033 * 8 7 5 10 10 C 1.46880 * 124.37249 * 89.99970 * 9 8 7 11 11 C 1.54707 * 105.52085 * 163.14154 * 10 9 8 12 12 C 1.53616 * 101.50997 * 24.52398 * 11 10 9 13 13 C 1.53251 * 111.06447 * 214.98266 * 12 11 10 14 14 C 1.54635 * 104.67462 * 238.99694 * 13 12 11 15 15 N 1.48653 * 104.63408 * 23.69324 * 14 13 12 16 16 C 1.46901 * 110.99720 * 201.48895 * 15 14 13 17 17 C 1.53003 * 109.47137 * 290.12131 * 16 15 14 18 18 C 1.50698 * 109.47096 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00024 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99961 * 180.02562 * 18 17 16 21 21 N 1.31520 * 120.00008 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00131 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47229 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47529 * 119.99352 * 22 20 18 25 25 H 1.48502 * 109.47276 * 239.99578 * 22 20 18 26 26 C 1.48796 * 104.38260 * 321.13565 * 15 14 13 27 27 C 1.34760 * 124.37370 * 269.96142 * 9 8 7 28 28 O 1.21277 * 125.13320 * 1.04934 * 27 9 8 29 29 H 1.09003 * 109.47121 * 270.16773 * 1 2 3 30 30 H 1.09005 * 109.46632 * 30.16507 * 1 2 3 31 31 H 1.08997 * 109.47031 * 150.16181 * 1 2 3 32 32 H 1.09001 * 109.47057 * 269.99571 * 6 5 4 33 33 H 1.08998 * 109.47536 * 29.99400 * 6 5 4 34 34 H 1.09004 * 109.46669 * 149.99409 * 6 5 4 35 35 H 1.09008 * 109.46844 * 330.00179 * 8 7 5 36 36 H 1.08994 * 109.47557 * 210.00471 * 8 7 5 37 37 H 1.09000 * 110.23696 * 44.13355 * 10 9 8 38 38 H 1.09000 * 110.31422 * 282.19184 * 10 9 8 39 39 H 1.08995 * 111.01929 * 142.58651 * 11 10 9 40 40 H 1.09005 * 111.01916 * 266.47359 * 11 10 9 41 41 H 1.09000 * 110.39359 * 357.79779 * 13 12 11 42 42 H 1.08997 * 110.39556 * 120.19468 * 13 12 11 43 43 H 1.09002 * 110.40715 * 142.48012 * 14 13 12 44 44 H 1.08997 * 110.40488 * 264.90168 * 14 13 12 45 45 H 1.08994 * 109.47418 * 50.12697 * 16 15 14 46 46 H 1.09001 * 109.46730 * 170.12563 * 16 15 14 47 47 H 1.08994 * 109.47428 * 300.00560 * 17 16 15 48 48 H 1.09001 * 109.46957 * 60.00571 * 17 16 15 49 49 H 0.96996 * 119.99865 * 180.02562 * 21 20 18 50 50 H 1.08995 * 110.46573 * 279.82214 * 26 15 14 51 51 H 1.09006 * 110.45596 * 157.25455 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7252 -0.0050 5 6 3.6024 -0.6069 -0.0036 6 6 4.9022 -1.3696 -0.0079 7 6 2.3539 -1.1321 0.0037 8 6 1.9590 -2.5864 0.0076 9 7 1.8383 -3.0560 1.3899 10 6 0.6001 -3.0040 2.1783 11 6 0.8237 -3.9714 3.3646 12 6 2.3564 -3.9817 3.4671 13 6 2.8714 -5.3637 3.8836 14 6 3.6470 -5.1130 5.1977 15 7 3.0667 -3.8576 5.7426 16 6 3.9947 -3.2129 6.6814 17 6 4.0951 -4.0523 7.9567 18 6 5.0465 -3.3906 8.9200 19 1 5.5314 -2.4642 8.6495 20 6 5.2987 -3.9683 10.1462 21 7 4.7085 -5.0966 10.4754 22 14 6.4775 -3.1478 11.3406 23 1 7.0048 -1.8981 10.7359 24 1 5.7606 -2.8244 12.6002 25 1 7.6047 -4.0687 11.6349 26 6 2.8415 -3.0040 4.5448 27 6 2.8488 -3.5921 2.1023 28 8 3.9843 -3.7379 1.7021 29 1 -0.3633 0.0030 1.0277 30 1 -0.3633 0.8886 -0.5164 31 1 -0.3633 -0.8914 -0.5113 32 1 5.2111 -1.5552 -1.0366 33 1 5.6682 -0.7852 0.5017 34 1 4.7672 -2.3203 0.5081 35 1 2.7200 -3.1709 -0.5096 36 1 1.0023 -2.7044 -0.5011 37 1 -0.2450 -3.3361 1.5752 38 1 0.4268 -1.9921 2.5445 39 1 0.3735 -3.5814 4.2774 40 1 0.4406 -4.9660 3.1357 41 1 2.0372 -6.0430 4.0585 42 1 3.5371 -5.7668 3.1205 43 1 3.4915 -5.9370 5.8940 44 1 4.7097 -4.9829 4.9928 45 1 4.9794 -3.1320 6.2212 46 1 3.6268 -2.2173 6.9298 47 1 3.1104 -4.1331 8.4169 48 1 4.4629 -5.0478 7.7083 49 1 4.8857 -5.5029 11.3382 50 1 3.7719 -2.5276 4.2359 51 1 2.0780 -2.2536 4.7498 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274038356.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:37 Heat of formation + Delta-G solvation = 27.515121 kcal Electronic energy + Delta-G solvation = -31551.519147 eV Core-core repulsion = 27453.865512 eV Total energy + Delta-G solvation = -4097.653635 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.16011 -41.24004 -38.07530 -36.71293 -35.58184 -34.11455 -33.54392 -32.38230 -30.66043 -29.03751 -28.91505 -28.40276 -27.92448 -26.76209 -24.79666 -23.25947 -22.50979 -21.76925 -21.00413 -20.31492 -19.97894 -18.92128 -17.93464 -17.33327 -16.69108 -16.42951 -16.37097 -15.68007 -15.19164 -14.71770 -14.55643 -14.42062 -14.27003 -14.03814 -13.82295 -13.76053 -13.48430 -13.40004 -13.24696 -12.90973 -12.76030 -12.74227 -12.61701 -12.49455 -12.33443 -12.05062 -11.90369 -11.42272 -11.22493 -11.20607 -10.99344 -10.92969 -10.85406 -10.66705 -10.48727 -10.24842 -9.83292 -9.77025 -9.47443 -9.36970 -9.10464 -9.04040 -8.33533 -7.95032 -5.99096 -4.01302 1.17132 1.80215 2.35812 2.84031 2.92226 3.31894 3.39336 3.43623 3.85946 4.00495 4.18115 4.24399 4.40697 4.45644 4.47722 4.61441 4.69599 4.80174 4.91766 4.97329 5.03883 5.07398 5.14731 5.19297 5.21232 5.24868 5.32666 5.36832 5.37084 5.48822 5.55091 5.60084 5.69470 5.74077 5.80447 5.85313 5.89704 5.91753 5.99695 6.12298 6.24354 6.30196 6.42499 6.45164 6.80494 6.93473 7.31554 7.41958 7.75341 7.88538 7.99020 8.02947 8.07302 8.43892 9.06037 9.62461 11.12314 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014417 B = 0.002446 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.659249 B =11444.260941 C =12169.616987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.031 3.969 3 N -0.369 5.369 4 O 0.093 5.907 5 C 0.004 3.996 6 C -0.098 4.098 7 C -0.236 4.236 8 C 0.208 3.792 9 N -0.617 5.617 10 C 0.101 3.899 11 C -0.116 4.116 12 C -0.097 4.097 13 C -0.102 4.102 14 C 0.038 3.962 15 N -0.504 5.504 16 C 0.052 3.948 17 C 0.031 3.969 18 C -0.521 4.521 19 H 0.054 0.946 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.056 3.944 27 C 0.536 3.464 28 O -0.521 6.521 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.120 0.880 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.045 0.955 45 H 0.024 0.976 46 H 0.061 0.939 47 H 0.025 0.975 48 H 0.016 0.984 49 H 0.260 0.740 50 H 0.043 0.957 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.927 3.579 -25.609 28.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.129 4.129 3 N -0.076 5.076 4 O 0.030 5.970 5 C -0.061 4.061 6 C -0.155 4.155 7 C -0.241 4.241 8 C 0.086 3.914 9 N -0.351 5.351 10 C -0.021 4.021 11 C -0.153 4.153 12 C -0.101 4.101 13 C -0.140 4.140 14 C -0.090 4.090 15 N -0.228 5.228 16 C -0.076 4.076 17 C -0.006 4.006 18 C -0.560 4.560 19 H 0.072 0.928 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.073 4.073 27 C 0.324 3.676 28 O -0.396 6.396 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.138 0.862 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.118 0.882 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.106 0.894 44 H 0.063 0.937 45 H 0.042 0.958 46 H 0.079 0.921 47 H 0.043 0.957 48 H 0.035 0.965 49 H 0.069 0.931 50 H 0.061 0.939 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.025 4.636 -25.446 28.117 hybrid contribution 1.320 0.060 0.314 1.358 sum -9.705 4.697 -25.132 27.347 Atomic orbital electron populations 1.20173 0.85988 1.03623 1.03468 1.23422 0.98805 0.88440 1.02231 1.73852 0.89281 1.23965 1.20522 1.84824 1.21667 1.22730 1.67766 1.24504 0.98578 0.83511 0.99490 1.20791 0.89737 1.00688 1.04238 1.21290 0.91955 0.97908 1.12962 1.19396 1.02767 0.87161 0.82120 1.48478 1.12026 1.61529 1.13087 1.22222 0.86461 1.00456 0.92987 1.22682 0.93906 1.00186 0.98576 1.21400 0.96798 0.98926 0.92960 1.22237 1.00375 0.93635 0.97782 1.23131 0.96722 0.94641 0.94542 1.65602 1.43782 1.03365 1.10077 1.22522 0.91748 0.98690 0.94607 1.19035 0.97390 0.94633 0.89592 1.21235 1.25946 1.08285 1.00565 0.92782 1.24987 0.96210 0.94971 0.98131 1.69981 1.43162 1.18157 1.21934 0.86551 0.80910 0.79523 0.81106 1.19775 1.20979 1.21025 1.22844 1.00045 0.94930 0.89445 1.20590 0.84369 0.75798 0.86881 1.90573 1.18956 1.55392 1.74715 0.90055 0.90493 0.90165 0.89523 0.89939 0.86205 0.88729 0.88977 0.90241 0.91244 0.88152 0.89680 0.90268 0.90792 0.89394 0.93685 0.95803 0.92070 0.95704 0.96525 0.93065 0.93879 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.39 36.01 0.37 -0.11 16 2 C 0.03 0.31 7.33 -82.10 -0.60 -0.29 16 3 N -0.37 -4.67 12.07 33.42 0.40 -4.26 16 4 O 0.09 1.15 11.20 17.18 0.19 1.35 16 5 C 0.00 0.04 7.49 -35.30 -0.26 -0.23 16 6 C -0.10 -0.90 10.25 36.01 0.37 -0.53 16 7 C -0.24 -2.31 5.90 -104.43 -0.62 -2.93 16 8 C 0.21 1.63 6.19 -5.20 -0.03 1.60 16 9 N -0.62 -5.68 2.93 -173.91 -0.51 -6.19 16 10 C 0.10 0.71 7.37 -2.94 -0.02 0.69 16 11 C -0.12 -0.99 6.08 -25.51 -0.16 -1.14 16 12 C -0.10 -1.16 0.83 -155.24 -0.13 -1.29 16 13 C -0.10 -1.31 6.27 -25.74 -0.16 -1.47 16 14 C 0.04 0.62 5.76 -1.99 -0.01 0.61 16 15 N -0.50 -8.98 5.37 -230.16 -1.24 -10.22 16 16 C 0.05 1.10 4.75 -3.82 -0.02 1.08 16 17 C 0.03 0.81 5.03 -27.88 -0.14 0.67 16 18 C -0.52 -14.88 9.11 -34.44 -0.31 -15.20 16 19 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 22 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 C 0.06 0.83 5.55 -2.57 -0.01 0.81 16 27 C 0.54 6.57 6.65 -11.22 -0.07 6.50 16 28 O -0.52 -7.71 14.33 5.56 0.08 -7.63 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.33 7.65 -51.93 -0.40 -0.06 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.12 1.34 4.96 -51.93 -0.26 1.08 16 35 H 0.09 0.75 7.89 -51.92 -0.41 0.35 16 36 H 0.09 0.47 7.65 -51.93 -0.40 0.07 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.10 0.88 7.70 -51.93 -0.40 0.48 16 40 H 0.08 0.62 7.61 -51.93 -0.40 0.23 16 41 H 0.08 0.88 7.44 -51.93 -0.39 0.50 16 42 H 0.07 0.96 7.47 -51.93 -0.39 0.57 16 43 H 0.09 1.53 7.79 -51.93 -0.40 1.12 16 44 H 0.04 0.80 7.81 -51.93 -0.41 0.39 16 45 H 0.02 0.52 7.88 -51.93 -0.41 0.11 16 46 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 47 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.02 0.45 7.27 -51.93 -0.38 0.07 16 49 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 50 H 0.04 0.71 7.77 -51.93 -0.40 0.30 16 51 H 0.08 1.11 7.68 -51.93 -0.40 0.71 16 LS Contribution 406.17 15.07 6.12 6.12 Total: -1.00 -33.67 406.17 -9.49 -43.17 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -8.35 Total: -3.31 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -1.91 Total: -9.64 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: -0.61 Total: -46.84 kcal Atomic # 8 Polarization: -6.56 SS G_CDS: 0.27 Total: -6.29 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.67 -9.49 -43.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038356.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.681 kcal (2) G-P(sol) polarization free energy of solvation -33.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds