Wall clock time and date at job start Wed Apr 1 2020 04:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30172 * 126.80375 * 2 1 4 4 O 1.20915 * 111.60318 * 180.25289 * 3 2 1 5 5 C 1.34041 * 111.56870 * 359.74937 * 4 3 2 6 6 C 1.50701 * 126.77531 * 180.02562 * 5 4 3 7 7 C 1.35450 * 106.44740 * 359.97438 * 5 4 3 8 8 C 1.50693 * 128.01064 * 179.97438 * 7 5 4 9 9 N 1.46496 * 109.47259 * 90.00033 * 8 7 5 10 10 C 1.46880 * 124.37249 * 89.99970 * 9 8 7 11 11 C 1.54707 * 105.52085 * 163.14154 * 10 9 8 12 12 C 1.53616 * 101.50997 * 24.52398 * 11 10 9 13 13 C 1.53251 * 111.06447 * 214.98266 * 12 11 10 14 14 C 1.54635 * 104.67462 * 238.99694 * 13 12 11 15 15 N 1.48653 * 104.63408 * 23.69324 * 14 13 12 16 16 C 1.46901 * 110.99720 * 201.48895 * 15 14 13 17 17 C 1.53003 * 109.47137 * 290.12131 * 16 15 14 18 18 C 1.50698 * 109.47096 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00024 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99961 * 180.02562 * 18 17 16 21 21 N 1.31520 * 120.00008 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00131 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47229 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47529 * 119.99352 * 22 20 18 25 25 H 1.48502 * 109.47276 * 239.99578 * 22 20 18 26 26 C 1.48796 * 104.38260 * 321.13565 * 15 14 13 27 27 C 1.34760 * 124.37370 * 269.96142 * 9 8 7 28 28 O 1.21277 * 125.13320 * 1.04934 * 27 9 8 29 29 H 1.09003 * 109.47121 * 270.16773 * 1 2 3 30 30 H 1.09005 * 109.46632 * 30.16507 * 1 2 3 31 31 H 1.08997 * 109.47031 * 150.16181 * 1 2 3 32 32 H 1.09001 * 109.47057 * 269.99571 * 6 5 4 33 33 H 1.08998 * 109.47536 * 29.99400 * 6 5 4 34 34 H 1.09004 * 109.46669 * 149.99409 * 6 5 4 35 35 H 1.09008 * 109.46844 * 330.00179 * 8 7 5 36 36 H 1.08994 * 109.47557 * 210.00471 * 8 7 5 37 37 H 1.09000 * 110.23696 * 44.13355 * 10 9 8 38 38 H 1.09000 * 110.31422 * 282.19184 * 10 9 8 39 39 H 1.08995 * 111.01929 * 142.58651 * 11 10 9 40 40 H 1.09005 * 111.01916 * 266.47359 * 11 10 9 41 41 H 1.09000 * 110.39359 * 357.79779 * 13 12 11 42 42 H 1.08997 * 110.39556 * 120.19468 * 13 12 11 43 43 H 1.09002 * 110.40715 * 142.48012 * 14 13 12 44 44 H 1.08997 * 110.40488 * 264.90168 * 14 13 12 45 45 H 1.08994 * 109.47418 * 50.12697 * 16 15 14 46 46 H 1.09001 * 109.46730 * 170.12563 * 16 15 14 47 47 H 1.08994 * 109.47428 * 300.00560 * 17 16 15 48 48 H 1.09001 * 109.46957 * 60.00571 * 17 16 15 49 49 H 0.96996 * 119.99865 * 180.02562 * 21 20 18 50 50 H 1.08995 * 110.46573 * 279.82214 * 26 15 14 51 51 H 1.09006 * 110.45596 * 157.25455 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7252 -0.0050 5 6 3.6024 -0.6069 -0.0036 6 6 4.9022 -1.3696 -0.0079 7 6 2.3539 -1.1321 0.0037 8 6 1.9590 -2.5864 0.0076 9 7 1.8383 -3.0560 1.3899 10 6 0.6001 -3.0040 2.1783 11 6 0.8237 -3.9714 3.3646 12 6 2.3564 -3.9817 3.4671 13 6 2.8714 -5.3637 3.8836 14 6 3.6470 -5.1130 5.1977 15 7 3.0667 -3.8576 5.7426 16 6 3.9947 -3.2129 6.6814 17 6 4.0951 -4.0523 7.9567 18 6 5.0465 -3.3906 8.9200 19 1 5.5314 -2.4642 8.6495 20 6 5.2987 -3.9683 10.1462 21 7 4.7085 -5.0966 10.4754 22 14 6.4775 -3.1478 11.3406 23 1 7.0048 -1.8981 10.7359 24 1 5.7606 -2.8244 12.6002 25 1 7.6047 -4.0687 11.6349 26 6 2.8415 -3.0040 4.5448 27 6 2.8488 -3.5921 2.1023 28 8 3.9843 -3.7379 1.7021 29 1 -0.3633 0.0030 1.0277 30 1 -0.3633 0.8886 -0.5164 31 1 -0.3633 -0.8914 -0.5113 32 1 5.2111 -1.5552 -1.0366 33 1 5.6682 -0.7852 0.5017 34 1 4.7672 -2.3203 0.5081 35 1 2.7200 -3.1709 -0.5096 36 1 1.0023 -2.7044 -0.5011 37 1 -0.2450 -3.3361 1.5752 38 1 0.4268 -1.9921 2.5445 39 1 0.3735 -3.5814 4.2774 40 1 0.4406 -4.9660 3.1357 41 1 2.0372 -6.0430 4.0585 42 1 3.5371 -5.7668 3.1205 43 1 3.4915 -5.9370 5.8940 44 1 4.7097 -4.9829 4.9928 45 1 4.9794 -3.1320 6.2212 46 1 3.6268 -2.2173 6.9298 47 1 3.1104 -4.1331 8.4169 48 1 4.4629 -5.0478 7.7083 49 1 4.8857 -5.5029 11.3382 50 1 3.7719 -2.5276 4.2359 51 1 2.0780 -2.2536 4.7498 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274038356.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:36 Heat of formation + Delta-G solvation = 5.930578 kcal Electronic energy + Delta-G solvation = -31552.455123 eV Core-core repulsion = 27453.865512 eV Total energy + Delta-G solvation = -4098.589611 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.95240 -42.15811 -39.29505 -37.57607 -36.50890 -35.50375 -34.70965 -33.83072 -31.87707 -30.48377 -29.66446 -29.30018 -28.84999 -27.54528 -26.53619 -24.37957 -23.48758 -23.18948 -21.84285 -21.57520 -21.06313 -19.88681 -18.75518 -18.58571 -18.11587 -17.51610 -17.25798 -16.76902 -16.54092 -16.24488 -15.76874 -15.50932 -15.27711 -15.10261 -14.69503 -14.55941 -14.47572 -14.30506 -14.10849 -14.04344 -13.89116 -13.73894 -13.51545 -13.35922 -13.28431 -13.21927 -13.02264 -12.95659 -12.72306 -12.52055 -12.39669 -12.32147 -11.97334 -11.87066 -11.73907 -11.66440 -11.35704 -11.23559 -10.99409 -10.65174 -10.56716 -10.26294 -9.76933 -9.47609 -8.21740 -6.32947 0.36737 1.06895 1.38831 1.38930 1.43814 1.52356 2.09466 2.17125 2.38990 2.99528 3.11526 3.21552 3.41369 3.41618 3.49469 3.52871 3.74678 3.94784 3.96316 4.03481 4.24251 4.31661 4.35015 4.42439 4.43712 4.46464 4.50932 4.54664 4.58714 4.63263 4.68973 4.71138 4.74328 4.77333 4.80929 4.88930 4.92148 4.98380 5.03040 5.08488 5.12632 5.18622 5.22426 5.27440 5.42608 5.58560 5.60367 5.74949 5.90826 6.03376 6.04627 6.26959 6.83375 7.12408 7.23158 7.36006 8.90492 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014417 B = 0.002446 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.659249 B =11444.260941 C =12169.616987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.036 3.964 3 N -0.404 5.404 4 O 0.067 5.933 5 C -0.012 4.012 6 C -0.093 4.093 7 C -0.236 4.236 8 C 0.207 3.793 9 N -0.608 5.608 10 C 0.101 3.899 11 C -0.110 4.110 12 C -0.097 4.097 13 C -0.091 4.091 14 C 0.034 3.966 15 N -0.508 5.508 16 C 0.068 3.932 17 C 0.042 3.958 18 C -0.547 4.547 19 H 0.056 0.944 20 C 0.004 3.996 21 N -0.929 5.929 22 Si 0.965 3.035 23 H -0.265 1.265 24 H -0.275 1.275 25 H -0.277 1.277 26 C 0.059 3.941 27 C 0.528 3.472 28 O -0.554 6.554 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.132 0.868 37 H 0.121 0.879 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.024 0.976 45 H 0.014 0.986 46 H 0.063 0.937 47 H -0.002 1.002 48 H -0.007 1.007 49 H 0.265 0.735 50 H 0.021 0.979 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.147 3.711 -26.932 30.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.124 4.124 3 N -0.116 5.116 4 O 0.009 5.991 5 C -0.077 4.077 6 C -0.150 4.150 7 C -0.241 4.241 8 C 0.085 3.915 9 N -0.340 5.340 10 C -0.021 4.021 11 C -0.147 4.147 12 C -0.101 4.101 13 C -0.129 4.129 14 C -0.094 4.094 15 N -0.232 5.232 16 C -0.060 4.060 17 C 0.005 3.995 18 C -0.585 4.585 19 H 0.074 0.926 20 C -0.195 4.195 21 N -0.568 5.568 22 Si 0.789 3.211 23 H -0.189 1.189 24 H -0.200 1.200 25 H -0.203 1.203 26 C -0.069 4.069 27 C 0.316 3.684 28 O -0.433 6.433 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.099 0.901 34 H 0.122 0.878 35 H 0.110 0.890 36 H 0.150 0.850 37 H 0.139 0.861 38 H 0.092 0.908 39 H 0.119 0.881 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.042 0.958 45 H 0.032 0.968 46 H 0.082 0.918 47 H 0.017 0.983 48 H 0.011 0.989 49 H 0.073 0.927 50 H 0.039 0.961 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.258 4.777 -26.792 30.272 hybrid contribution 1.989 -0.002 0.711 2.112 sum -11.269 4.775 -26.081 28.810 Atomic orbital electron populations 1.20394 0.83185 1.05216 1.04560 1.24089 1.00475 0.87769 1.00051 1.73847 0.89636 1.25474 1.22644 1.84783 1.22012 1.23519 1.68787 1.24895 0.99749 0.83324 0.99693 1.20760 0.89349 0.99562 1.05350 1.21583 0.91337 0.98878 1.12265 1.19651 1.04825 0.85555 0.81466 1.48517 1.11955 1.59993 1.13529 1.22457 0.86466 1.00454 0.92699 1.22713 0.90493 1.01997 0.99523 1.21373 0.99654 0.96999 0.92055 1.22175 1.00576 0.94954 0.95192 1.23132 0.96253 0.93671 0.96379 1.65508 1.42259 1.04140 1.11274 1.22144 0.92242 0.98026 0.93584 1.18825 0.95259 0.94115 0.91334 1.21638 1.26664 1.08656 1.01584 0.92613 1.25925 0.97937 0.95526 1.00064 1.70102 1.44498 1.19535 1.22710 0.85409 0.78506 0.78665 0.78517 1.18903 1.20029 1.20272 1.22858 0.99584 0.95444 0.89032 1.20621 0.84433 0.76204 0.87144 1.90565 1.20456 1.56917 1.75349 0.89004 0.90437 0.87108 0.87389 0.90135 0.87755 0.89007 0.84981 0.86123 0.90836 0.88098 0.87573 0.87863 0.90941 0.90863 0.95797 0.96814 0.91823 0.98325 0.98901 0.92657 0.96077 0.88532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.39 71.24 0.74 0.04 16 2 C 0.04 0.66 7.33 43.58 0.32 0.98 16 3 N -0.40 -10.10 12.07 -49.57 -0.60 -10.70 16 4 O 0.07 1.71 11.20 71.63 0.80 2.51 16 5 C -0.01 -0.27 7.49 25.04 0.19 -0.08 16 6 C -0.09 -1.75 10.25 71.24 0.73 -1.02 16 7 C -0.24 -4.17 5.90 -19.74 -0.12 -4.29 16 8 C 0.21 2.56 6.19 85.63 0.53 3.09 16 9 N -0.61 -9.24 2.93 -822.52 -2.41 -11.65 16 10 C 0.10 0.94 7.37 86.89 0.64 1.58 16 11 C -0.11 -1.47 6.08 31.38 0.19 -1.28 16 12 C -0.10 -2.18 0.83 -52.66 -0.04 -2.22 16 13 C -0.09 -2.26 6.27 31.24 0.20 -2.06 16 14 C 0.03 1.17 5.76 86.52 0.50 1.66 16 15 N -0.51 -18.53 5.37 -882.08 -4.74 -23.27 16 16 C 0.07 3.03 4.75 86.30 0.41 3.44 16 17 C 0.04 2.30 5.03 29.85 0.15 2.45 16 18 C -0.55 -32.04 9.11 25.60 0.23 -31.81 16 19 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 20 C 0.00 0.22 5.46 84.65 0.46 0.68 16 21 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 22 Si 0.96 45.04 29.54 68.60 2.03 47.07 16 23 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 26 C 0.06 1.74 5.55 86.06 0.48 2.21 16 27 C 0.53 12.20 6.65 87.51 0.58 12.78 16 28 O -0.55 -16.42 14.33 -3.02 -0.04 -16.47 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.11 0.33 7.65 -2.39 -0.02 0.32 16 32 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.10 2.38 4.96 -2.39 -0.01 2.37 16 35 H 0.09 1.25 7.89 -2.38 -0.02 1.23 16 36 H 0.13 0.61 7.65 -2.39 -0.02 0.59 16 37 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 38 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.10 1.41 7.70 -2.39 -0.02 1.39 16 40 H 0.11 1.04 7.61 -2.38 -0.02 1.02 16 41 H 0.10 2.07 7.44 -2.39 -0.02 2.06 16 42 H 0.07 1.85 7.47 -2.39 -0.02 1.83 16 43 H 0.07 2.69 7.79 -2.39 -0.02 2.68 16 44 H 0.02 0.91 7.81 -2.39 -0.02 0.89 16 45 H 0.01 0.63 7.88 -2.39 -0.02 0.61 16 46 H 0.06 2.76 8.13 -2.39 -0.02 2.74 16 47 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 48 H -0.01 -0.43 7.27 -2.39 -0.02 -0.45 16 49 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 50 H 0.02 0.71 7.77 -2.39 -0.02 0.69 16 51 H 0.10 2.52 7.68 -2.38 -0.02 2.50 16 Total: -1.00 -77.18 406.17 2.43 -74.75 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 0.92 Total: 8.35 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: 6.19 Total: -13.83 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -7.46 Total: -102.38 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.76 Total: -13.95 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -77.18 2.43 -74.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038356.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.677 kcal (2) G-P(sol) polarization free energy of solvation -77.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds