Wall clock time and date at job start Wed Apr 1 2020 04:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30175 * 126.80174 * 2 1 4 4 O 1.20917 * 111.60357 * 180.25007 * 3 2 1 5 5 C 1.34044 * 111.56814 * 359.75008 * 4 3 2 6 6 C 1.50695 * 126.77555 * 179.97438 * 5 4 3 7 7 C 1.35447 * 106.44556 * 359.97438 * 5 4 3 8 8 C 1.50703 * 128.00740 * 179.97438 * 7 5 4 9 9 N 1.46502 * 109.46941 * 94.13039 * 8 7 5 10 10 C 1.31078 * 116.93521 * 97.85353 * 9 8 7 11 11 O 1.21280 * 118.62935 * 359.02473 * 10 9 8 12 12 C 1.50335 * 122.56689 * 181.06514 * 10 9 8 13 13 C 1.52894 * 109.37721 * 336.42570 * 12 10 9 14 14 C 1.53122 * 109.29021 * 52.63091 * 13 12 10 15 15 H 1.08997 * 111.55841 * 60.96183 * 14 13 12 16 16 C 1.44688 * 117.33654 * 275.94027 * 9 8 7 17 17 H 1.09008 * 110.00738 * 47.03223 * 16 9 8 18 18 C 1.54146 * 110.97926 * 285.27351 * 16 9 8 19 19 C 1.54090 * 105.00434 * 217.94418 * 18 16 9 20 20 N 1.48768 * 107.93520 * 184.03934 * 14 13 12 21 21 C 1.46905 * 110.99920 * 316.84912 * 20 14 13 22 22 C 1.52992 * 109.46962 * 170.00242 * 21 20 14 23 23 C 1.50697 * 109.46980 * 179.97438 * 22 21 20 24 24 H 1.07997 * 120.00525 * 359.97438 * 23 22 21 25 25 C 1.37882 * 119.99765 * 179.97438 * 23 22 21 26 26 N 1.31508 * 120.00489 * 0.02562 * 25 23 22 27 27 Si 1.86808 * 119.99673 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47096 * 60.00159 * 27 25 23 29 29 H 1.48500 * 109.46840 * 180.02562 * 27 25 23 30 30 H 1.48496 * 109.47174 * 299.99988 * 27 25 23 31 31 H 1.09002 * 109.47333 * 265.37030 * 1 2 3 32 32 H 1.09004 * 109.47122 * 25.37837 * 1 2 3 33 33 H 1.09005 * 109.46583 * 145.37764 * 1 2 3 34 34 H 1.09007 * 109.47124 * 275.86255 * 6 5 4 35 35 H 1.09005 * 109.47323 * 35.86423 * 6 5 4 36 36 H 1.08998 * 109.47325 * 155.86358 * 6 5 4 37 37 H 1.08999 * 109.46756 * 334.13150 * 8 7 5 38 38 H 1.08993 * 109.47196 * 214.13073 * 8 7 5 39 39 H 1.09008 * 109.48344 * 216.45800 * 12 10 9 40 40 H 1.08999 * 109.49340 * 96.41100 * 12 10 9 41 41 H 1.08996 * 109.50561 * 172.57765 * 13 12 10 42 42 H 1.09000 * 109.50436 * 292.69083 * 13 12 10 43 43 H 1.09001 * 110.33534 * 336.82075 * 18 16 9 44 44 H 1.09000 * 110.33818 * 98.95725 * 18 16 9 45 45 H 1.08990 * 109.92403 * 117.62141 * 19 18 16 46 46 H 1.09002 * 109.91682 * 238.94040 * 19 18 16 47 47 H 1.09004 * 109.46738 * 289.99670 * 21 20 14 48 48 H 1.08996 * 109.46876 * 49.99630 * 21 20 14 49 49 H 1.09002 * 109.47164 * 299.99792 * 22 21 20 50 50 H 1.08995 * 109.47425 * 59.99609 * 22 21 20 51 51 H 0.96998 * 120.00534 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0049 5 6 3.6024 -0.6068 -0.0035 6 6 4.9021 -1.3695 -0.0088 7 6 2.3540 -1.1320 0.0037 8 6 1.9591 -2.5864 0.0076 9 7 1.7424 -3.0299 1.3870 10 6 0.5038 -3.0535 1.8154 11 8 -0.3780 -2.6952 1.0638 12 6 0.1393 -3.4644 3.2148 13 6 1.2441 -4.3533 3.7866 14 6 2.5925 -3.6433 3.6376 15 1 2.6105 -2.6994 4.1823 16 6 2.9051 -3.4431 2.1425 17 1 3.7046 -2.7112 2.0266 18 6 3.3960 -4.8308 1.6849 19 6 3.8460 -5.5406 2.9765 20 7 3.6540 -4.5719 4.1110 21 6 3.2490 -5.2456 5.3520 22 6 4.2422 -6.3644 5.6724 23 6 3.8270 -7.0551 6.9458 24 1 2.9435 -6.7285 7.4740 25 6 4.5753 -8.1041 7.4365 26 7 5.6515 -8.5016 6.7937 27 14 4.0611 -8.9599 9.0154 28 1 2.7029 -9.5361 8.8464 29 1 5.0250 -10.0459 9.3263 30 1 4.0469 -7.9775 10.1289 31 1 -0.3634 -0.0829 1.0243 32 1 -0.3633 0.9285 -0.4405 33 1 -0.3633 -0.8457 -0.5839 34 1 5.2634 -1.4645 -1.0329 35 1 5.6401 -0.8341 0.5886 36 1 4.7430 -2.3615 0.4138 37 1 2.7539 -3.1799 -0.4442 38 1 1.0400 -2.7149 -0.5640 39 1 -0.8001 -4.0171 3.1985 40 1 0.0282 -2.5765 3.8373 41 1 1.0481 -4.5443 4.8416 42 1 1.2685 -5.2981 3.2436 43 1 2.5836 -5.3832 1.2126 44 1 4.2341 -4.7279 0.9957 45 1 3.2362 -6.4282 3.1443 46 1 4.8975 -5.8177 2.9008 47 1 3.2376 -4.5248 6.1696 48 1 2.2525 -5.6690 5.2269 49 1 4.2537 -7.0852 4.8548 50 1 5.2387 -5.9409 5.7974 51 1 6.1777 -9.2398 7.1387 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274038825.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:51 Heat of formation + Delta-G solvation = 34.091599 kcal Electronic energy + Delta-G solvation = -32226.115073 eV Core-core repulsion = 28128.746616 eV Total energy + Delta-G solvation = -4097.368457 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.10148 -41.37079 -38.75474 -36.32460 -34.90046 -33.91772 -33.24318 -33.10230 -31.53834 -29.04888 -28.79568 -28.54408 -27.64633 -26.77858 -24.54274 -24.06074 -22.25607 -21.89167 -21.49692 -20.28302 -19.26022 -18.33923 -17.86406 -17.23541 -16.96823 -16.69150 -16.52688 -15.76222 -15.42273 -14.74488 -14.59473 -14.46793 -14.27937 -14.05960 -13.84923 -13.70602 -13.52841 -13.24917 -13.22661 -12.90948 -12.67597 -12.59268 -12.52605 -12.27180 -12.15472 -11.88048 -11.71521 -11.60892 -11.47095 -11.13252 -11.08619 -10.93594 -10.85928 -10.69344 -10.58951 -10.14987 -10.02066 -9.70163 -9.44745 -9.32911 -9.22664 -9.00763 -8.42428 -7.93525 -6.06892 -4.09725 1.21047 1.93512 2.54343 2.88970 2.96437 3.28518 3.33578 3.35469 4.02165 4.15251 4.25781 4.28836 4.37943 4.45885 4.57153 4.60613 4.72547 4.80968 4.99914 5.03677 5.07481 5.10603 5.14591 5.25013 5.28004 5.29574 5.37029 5.39610 5.46368 5.49051 5.50328 5.60241 5.63360 5.70475 5.76559 5.79006 5.86944 6.04095 6.08695 6.10412 6.12031 6.19379 6.32709 6.38156 6.79809 7.18936 7.27331 7.35489 7.62628 7.76895 7.96721 8.04200 8.11780 8.34106 8.96916 9.54558 11.04316 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019267 B = 0.002569 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.907479 B =10897.936449 C =11652.877659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.040 3.960 3 N -0.372 5.372 4 O 0.094 5.906 5 C -0.017 4.017 6 C -0.081 4.081 7 C -0.219 4.219 8 C 0.178 3.822 9 N -0.576 5.576 10 C 0.521 3.479 11 O -0.557 6.557 12 C -0.133 4.133 13 C -0.155 4.155 14 C 0.059 3.941 15 H 0.097 0.903 16 C 0.139 3.861 17 H 0.094 0.906 18 C -0.144 4.144 19 C 0.040 3.960 20 N -0.507 5.507 21 C 0.048 3.952 22 C 0.026 3.974 23 C -0.524 4.524 24 H 0.054 0.946 25 C 0.060 3.940 26 N -0.893 5.893 27 Si 0.892 3.108 28 H -0.277 1.277 29 H -0.287 1.287 30 H -0.276 1.276 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.054 0.946 46 H 0.084 0.916 47 H 0.065 0.935 48 H 0.035 0.965 49 H 0.017 0.983 50 H 0.024 0.976 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.466 12.740 -15.925 21.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.119 4.119 3 N -0.080 5.080 4 O 0.031 5.969 5 C -0.081 4.081 6 C -0.138 4.138 7 C -0.224 4.224 8 C 0.055 3.945 9 N -0.306 5.306 10 C 0.309 3.691 11 O -0.437 6.437 12 C -0.173 4.173 13 C -0.193 4.193 14 C -0.051 4.051 15 H 0.115 0.885 16 C 0.035 3.965 17 H 0.112 0.888 18 C -0.183 4.183 19 C -0.088 4.088 20 N -0.231 5.231 21 C -0.079 4.079 22 C -0.011 4.011 23 C -0.563 4.563 24 H 0.072 0.928 25 C -0.142 4.142 26 N -0.532 5.532 27 Si 0.719 3.281 28 H -0.203 1.203 29 H -0.213 1.213 30 H -0.202 1.202 31 H 0.097 0.903 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.126 0.874 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.073 0.927 46 H 0.103 0.897 47 H 0.084 0.916 48 H 0.053 0.947 49 H 0.036 0.964 50 H 0.042 0.958 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.476 14.368 -16.103 22.265 hybrid contribution -0.930 -1.801 0.910 2.222 sum -6.407 12.567 -15.192 20.731 Atomic orbital electron populations 1.20157 0.85472 1.03154 1.03817 1.23527 0.99149 0.88156 1.01061 1.73859 0.89211 1.23938 1.20943 1.84808 1.21786 1.22390 1.67885 1.24346 0.98123 0.84029 1.01636 1.20476 0.90166 0.98846 1.04310 1.21219 0.91718 0.97921 1.11559 1.19676 1.03426 0.87226 0.84170 1.46488 1.06776 1.63140 1.14152 1.19643 0.81978 0.77226 0.90247 1.90680 1.47098 1.49222 1.56723 1.21626 1.00762 1.01922 0.93025 1.22307 0.94577 0.99197 1.03268 1.22881 0.90804 0.98332 0.93040 0.88482 1.21491 0.87057 0.96640 0.91336 0.88832 1.22852 1.01280 0.95411 0.98738 1.23187 1.02364 0.94816 0.88386 1.65675 1.37792 1.16111 1.03472 1.22627 0.98930 0.97401 0.88947 1.19120 0.94320 0.91345 0.96337 1.21120 1.10724 1.15904 1.08533 0.92823 1.24980 0.94936 0.97033 0.97235 1.69942 1.16046 1.27780 1.39398 0.86668 0.78323 0.79241 0.83831 1.20283 1.21252 1.20192 0.90252 0.91380 0.89313 0.89198 0.89321 0.88838 0.89355 0.87439 0.88295 0.88473 0.89211 0.90887 0.91024 0.90577 0.92749 0.89731 0.91635 0.94733 0.96440 0.95801 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 9.25 36.01 0.33 -0.41 16 2 C 0.04 0.49 7.33 -82.10 -0.60 -0.11 16 3 N -0.37 -4.94 12.07 33.42 0.40 -4.54 16 4 O 0.09 1.12 11.20 17.17 0.19 1.31 16 5 C -0.02 -0.16 7.49 -35.31 -0.26 -0.42 16 6 C -0.08 -0.47 10.05 36.00 0.36 -0.11 16 7 C -0.22 -2.29 5.85 -104.42 -0.61 -2.90 16 8 C 0.18 1.66 5.36 -5.19 -0.03 1.64 16 9 N -0.58 -5.98 2.38 -168.66 -0.40 -6.38 16 10 C 0.52 6.20 7.42 -12.78 -0.09 6.11 16 11 O -0.56 -7.73 13.86 5.56 0.08 -7.65 16 12 C -0.13 -1.42 6.07 -28.11 -0.17 -1.59 16 13 C -0.15 -1.83 3.95 -26.72 -0.11 -1.93 16 14 C 0.06 0.72 3.39 -66.07 -0.22 0.50 16 15 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 16 C 0.14 1.44 3.01 -67.75 -0.20 1.23 16 17 H 0.09 0.92 6.37 -51.92 -0.33 0.59 16 18 C -0.14 -1.47 5.73 -25.56 -0.15 -1.61 16 19 C 0.04 0.57 4.81 -1.28 -0.01 0.56 16 20 N -0.51 -7.81 5.44 -220.65 -1.20 -9.01 16 21 C 0.05 0.90 4.41 -3.83 -0.02 0.88 16 22 C 0.03 0.63 4.76 -27.89 -0.13 0.50 16 23 C -0.52 -14.11 9.11 -34.44 -0.31 -14.43 16 24 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 25 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 26 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 27 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 30 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 31 H 0.08 0.91 7.92 -51.93 -0.41 0.50 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.95 7.23 -51.93 -0.38 0.57 16 34 H 0.09 0.37 8.14 -51.92 -0.42 -0.05 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.50 6.02 -51.93 -0.31 0.19 16 37 H 0.09 0.63 7.34 -51.93 -0.38 0.25 16 38 H 0.11 1.10 6.60 -51.93 -0.34 0.76 16 39 H 0.10 1.00 8.14 -51.92 -0.42 0.58 16 40 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.09 1.13 6.33 -51.93 -0.33 0.80 16 42 H 0.07 0.93 6.89 -51.93 -0.36 0.57 16 43 H 0.07 0.73 8.06 -51.93 -0.42 0.31 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.85 7.05 -51.93 -0.37 0.49 16 46 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 48 H 0.03 0.63 5.56 -51.93 -0.29 0.34 16 49 H 0.02 0.44 6.73 -51.93 -0.35 0.09 16 50 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 392.12 15.07 5.91 5.91 Total: -1.00 -31.25 392.12 -9.66 -40.91 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -8.03 Total: -0.81 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -2.32 Total: -10.55 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: -0.46 Total: -45.07 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: 0.27 Total: -6.34 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.25 -9.66 -40.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038825.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.001 kcal (2) G-P(sol) polarization free energy of solvation -31.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds