Wall clock time and date at job start Wed Apr 1 2020 04:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30175 * 126.80174 * 2 1 4 4 O 1.20917 * 111.60357 * 180.25007 * 3 2 1 5 5 C 1.34044 * 111.56814 * 359.75008 * 4 3 2 6 6 C 1.50695 * 126.77555 * 179.97438 * 5 4 3 7 7 C 1.35447 * 106.44556 * 359.97438 * 5 4 3 8 8 C 1.50703 * 128.00740 * 179.97438 * 7 5 4 9 9 N 1.46502 * 109.46941 * 94.13039 * 8 7 5 10 10 C 1.31078 * 116.93521 * 97.85353 * 9 8 7 11 11 O 1.21280 * 118.62935 * 359.02473 * 10 9 8 12 12 C 1.50335 * 122.56689 * 181.06514 * 10 9 8 13 13 C 1.52894 * 109.37721 * 336.42570 * 12 10 9 14 14 C 1.53122 * 109.29021 * 52.63091 * 13 12 10 15 15 H 1.08997 * 111.55841 * 60.96183 * 14 13 12 16 16 C 1.44688 * 117.33654 * 275.94027 * 9 8 7 17 17 H 1.09008 * 110.00738 * 47.03223 * 16 9 8 18 18 C 1.54146 * 110.97926 * 285.27351 * 16 9 8 19 19 C 1.54090 * 105.00434 * 217.94418 * 18 16 9 20 20 N 1.48768 * 107.93520 * 184.03934 * 14 13 12 21 21 C 1.46905 * 110.99920 * 316.84912 * 20 14 13 22 22 C 1.52992 * 109.46962 * 170.00242 * 21 20 14 23 23 C 1.50697 * 109.46980 * 179.97438 * 22 21 20 24 24 H 1.07997 * 120.00525 * 359.97438 * 23 22 21 25 25 C 1.37882 * 119.99765 * 179.97438 * 23 22 21 26 26 N 1.31508 * 120.00489 * 0.02562 * 25 23 22 27 27 Si 1.86808 * 119.99673 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47096 * 60.00159 * 27 25 23 29 29 H 1.48500 * 109.46840 * 180.02562 * 27 25 23 30 30 H 1.48496 * 109.47174 * 299.99988 * 27 25 23 31 31 H 1.09002 * 109.47333 * 265.37030 * 1 2 3 32 32 H 1.09004 * 109.47122 * 25.37837 * 1 2 3 33 33 H 1.09005 * 109.46583 * 145.37764 * 1 2 3 34 34 H 1.09007 * 109.47124 * 275.86255 * 6 5 4 35 35 H 1.09005 * 109.47323 * 35.86423 * 6 5 4 36 36 H 1.08998 * 109.47325 * 155.86358 * 6 5 4 37 37 H 1.08999 * 109.46756 * 334.13150 * 8 7 5 38 38 H 1.08993 * 109.47196 * 214.13073 * 8 7 5 39 39 H 1.09008 * 109.48344 * 216.45800 * 12 10 9 40 40 H 1.08999 * 109.49340 * 96.41100 * 12 10 9 41 41 H 1.08996 * 109.50561 * 172.57765 * 13 12 10 42 42 H 1.09000 * 109.50436 * 292.69083 * 13 12 10 43 43 H 1.09001 * 110.33534 * 336.82075 * 18 16 9 44 44 H 1.09000 * 110.33818 * 98.95725 * 18 16 9 45 45 H 1.08990 * 109.92403 * 117.62141 * 19 18 16 46 46 H 1.09002 * 109.91682 * 238.94040 * 19 18 16 47 47 H 1.09004 * 109.46738 * 289.99670 * 21 20 14 48 48 H 1.08996 * 109.46876 * 49.99630 * 21 20 14 49 49 H 1.09002 * 109.47164 * 299.99792 * 22 21 20 50 50 H 1.08995 * 109.47425 * 59.99609 * 22 21 20 51 51 H 0.96998 * 120.00534 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0049 5 6 3.6024 -0.6068 -0.0035 6 6 4.9021 -1.3695 -0.0088 7 6 2.3540 -1.1320 0.0037 8 6 1.9591 -2.5864 0.0076 9 7 1.7424 -3.0299 1.3870 10 6 0.5038 -3.0535 1.8154 11 8 -0.3780 -2.6952 1.0638 12 6 0.1393 -3.4644 3.2148 13 6 1.2441 -4.3533 3.7866 14 6 2.5925 -3.6433 3.6376 15 1 2.6105 -2.6994 4.1823 16 6 2.9051 -3.4431 2.1425 17 1 3.7046 -2.7112 2.0266 18 6 3.3960 -4.8308 1.6849 19 6 3.8460 -5.5406 2.9765 20 7 3.6540 -4.5719 4.1110 21 6 3.2490 -5.2456 5.3520 22 6 4.2422 -6.3644 5.6724 23 6 3.8270 -7.0551 6.9458 24 1 2.9435 -6.7285 7.4740 25 6 4.5753 -8.1041 7.4365 26 7 5.6515 -8.5016 6.7937 27 14 4.0611 -8.9599 9.0154 28 1 2.7029 -9.5361 8.8464 29 1 5.0250 -10.0459 9.3263 30 1 4.0469 -7.9775 10.1289 31 1 -0.3634 -0.0829 1.0243 32 1 -0.3633 0.9285 -0.4405 33 1 -0.3633 -0.8457 -0.5839 34 1 5.2634 -1.4645 -1.0329 35 1 5.6401 -0.8341 0.5886 36 1 4.7430 -2.3615 0.4138 37 1 2.7539 -3.1799 -0.4442 38 1 1.0400 -2.7149 -0.5640 39 1 -0.8001 -4.0171 3.1985 40 1 0.0282 -2.5765 3.8373 41 1 1.0481 -4.5443 4.8416 42 1 1.2685 -5.2981 3.2436 43 1 2.5836 -5.3832 1.2126 44 1 4.2341 -4.7279 0.9957 45 1 3.2362 -6.4282 3.1443 46 1 4.8975 -5.8177 2.9008 47 1 3.2376 -4.5248 6.1696 48 1 2.2525 -5.6690 5.2269 49 1 4.2537 -7.0852 4.8548 50 1 5.2387 -5.9409 5.7974 51 1 6.1777 -9.2398 7.1387 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274038825.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:50 Heat of formation + Delta-G solvation = 15.222759 kcal Electronic energy + Delta-G solvation = -32226.933287 eV Core-core repulsion = 28128.746616 eV Total energy + Delta-G solvation = -4098.186672 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.95145 -42.31149 -39.82975 -37.23496 -36.04246 -35.15010 -34.55263 -33.99446 -32.96956 -30.36813 -29.68830 -29.36119 -28.77460 -27.52970 -26.26422 -25.00648 -23.59210 -22.92214 -22.52823 -21.09849 -20.56416 -19.25219 -18.73848 -18.54387 -18.08550 -17.81030 -17.62076 -16.81342 -16.52458 -16.39537 -15.76969 -15.39924 -15.32082 -15.12233 -14.86795 -14.63908 -14.34035 -14.22697 -14.15990 -13.95135 -13.85525 -13.57975 -13.40647 -13.26357 -13.15098 -13.08605 -12.90946 -12.76254 -12.68139 -12.53298 -12.43740 -12.36535 -11.95158 -11.87835 -11.71426 -11.63280 -11.27236 -11.24293 -10.99606 -10.61317 -10.52531 -10.12407 -9.88013 -9.21439 -8.18288 -6.28468 0.45334 1.07241 1.41778 1.43595 1.51324 1.63562 2.07889 2.21352 2.41699 3.07179 3.15763 3.21384 3.36126 3.47988 3.53869 3.64518 3.79717 3.86093 4.01181 4.12047 4.15787 4.24596 4.36536 4.37807 4.43284 4.52499 4.55845 4.59640 4.60723 4.67745 4.71132 4.73725 4.75373 4.80293 4.86801 4.87181 4.89513 4.97346 5.07640 5.11877 5.14892 5.18731 5.24296 5.29902 5.39186 5.48900 5.68375 5.82078 5.94692 6.11598 6.33217 6.45181 6.88833 7.14128 7.30270 7.40508 8.93187 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019267 B = 0.002569 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.907479 B =10897.936449 C =11652.877659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.025 3.975 3 N -0.402 5.402 4 O 0.083 5.917 5 C -0.004 4.004 6 C -0.082 4.082 7 C -0.230 4.230 8 C 0.181 3.819 9 N -0.571 5.571 10 C 0.516 3.484 11 O -0.579 6.579 12 C -0.127 4.127 13 C -0.147 4.147 14 C 0.058 3.942 15 H 0.101 0.899 16 C 0.149 3.851 17 H 0.108 0.892 18 C -0.130 4.130 19 C 0.040 3.960 20 N -0.516 5.516 21 C 0.066 3.934 22 C 0.035 3.965 23 C -0.543 4.543 24 H 0.059 0.941 25 C 0.004 3.996 26 N -0.929 5.929 27 Si 0.959 3.041 28 H -0.268 1.268 29 H -0.285 1.285 30 H -0.268 1.268 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.118 0.882 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.107 0.893 45 H 0.033 0.967 46 H 0.071 0.929 47 H 0.062 0.938 48 H 0.040 0.960 49 H -0.001 1.001 50 H -0.009 1.009 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.538 12.847 -16.490 21.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.134 4.134 3 N -0.111 5.111 4 O 0.022 5.978 5 C -0.069 4.069 6 C -0.139 4.139 7 C -0.235 4.235 8 C 0.058 3.942 9 N -0.299 5.299 10 C 0.305 3.695 11 O -0.460 6.460 12 C -0.167 4.167 13 C -0.186 4.186 14 C -0.051 4.051 15 H 0.119 0.881 16 C 0.044 3.956 17 H 0.126 0.874 18 C -0.169 4.169 19 C -0.088 4.088 20 N -0.240 5.240 21 C -0.062 4.062 22 C -0.002 4.002 23 C -0.582 4.582 24 H 0.077 0.923 25 C -0.194 4.194 26 N -0.569 5.569 27 Si 0.784 3.216 28 H -0.193 1.193 29 H -0.210 1.210 30 H -0.193 1.193 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.131 0.869 35 H 0.115 0.885 36 H 0.122 0.878 37 H 0.136 0.864 38 H 0.117 0.883 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.095 0.905 44 H 0.126 0.874 45 H 0.051 0.949 46 H 0.090 0.910 47 H 0.080 0.920 48 H 0.058 0.942 49 H 0.017 0.983 50 H 0.009 0.991 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.542 14.486 -16.675 22.774 hybrid contribution -0.863 -1.820 1.060 2.276 sum -6.405 12.666 -15.616 21.102 Atomic orbital electron populations 1.20083 0.85165 1.03430 1.03205 1.23842 0.99688 0.88839 1.01008 1.73852 0.89859 1.24906 1.22486 1.84768 1.21285 1.23724 1.68065 1.24998 0.99316 0.83168 0.99403 1.20715 0.88404 0.98679 1.06055 1.21330 0.91762 0.97997 1.12453 1.19784 1.04094 0.86986 0.83292 1.46458 1.06266 1.62514 1.14668 1.19809 0.82257 0.77064 0.90400 1.90679 1.47757 1.50299 1.57278 1.21589 1.00437 1.02083 0.92583 1.22180 0.94785 0.98985 1.02652 1.22939 0.90012 0.97549 0.94598 0.88149 1.21410 0.87233 0.97145 0.89764 0.87387 1.22793 1.02545 0.94536 0.97019 1.23162 1.01302 0.94411 0.89931 1.65542 1.39129 1.16395 1.02887 1.22225 0.97441 0.95752 0.90749 1.18933 0.93990 0.92376 0.94916 1.21602 1.10856 1.16180 1.09554 0.92273 1.25875 0.94918 0.97899 1.00689 1.70073 1.17243 1.28428 1.41186 0.85595 0.78213 0.78122 0.79686 1.19261 1.21006 1.19338 0.91171 0.90829 0.89322 0.86912 0.88456 0.87750 0.86372 0.88333 0.87715 0.87493 0.90089 0.91736 0.90520 0.87415 0.94897 0.91028 0.91989 0.94170 0.98312 0.99061 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.31 9.25 71.24 0.66 -0.65 16 2 C 0.03 0.59 7.33 43.58 0.32 0.91 16 3 N -0.40 -10.44 12.07 -49.56 -0.60 -11.04 16 4 O 0.08 1.86 11.20 71.60 0.80 2.66 16 5 C 0.00 -0.07 7.49 25.04 0.19 0.12 16 6 C -0.08 -0.65 10.05 71.23 0.72 0.07 16 7 C -0.23 -4.34 5.85 -19.73 -0.12 -4.46 16 8 C 0.18 2.89 5.36 85.63 0.46 3.35 16 9 N -0.57 -10.46 2.38 -807.94 -1.92 -12.38 16 10 C 0.52 11.43 7.42 88.11 0.65 12.08 16 11 O -0.58 -15.36 13.86 -3.03 -0.04 -15.41 16 12 C -0.13 -2.52 6.07 29.70 0.18 -2.34 16 13 C -0.15 -3.31 3.95 30.60 0.12 -3.19 16 14 C 0.06 1.33 3.39 44.95 0.15 1.49 16 15 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 16 C 0.15 2.66 3.01 46.07 0.14 2.80 16 17 H 0.11 1.71 6.37 -2.38 -0.02 1.70 16 18 C -0.13 -2.29 5.73 31.35 0.18 -2.11 16 19 C 0.04 1.09 4.81 85.98 0.41 1.51 16 20 N -0.52 -15.61 5.44 -852.00 -4.64 -20.24 16 21 C 0.07 2.49 4.41 86.30 0.38 2.87 16 22 C 0.04 1.75 4.76 29.84 0.14 1.89 16 23 C -0.54 -29.63 9.11 25.60 0.23 -29.40 16 24 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 25 C 0.00 0.25 5.46 84.66 0.46 0.71 16 26 N -0.93 -54.85 13.29 21.45 0.28 -54.56 16 27 Si 0.96 42.98 29.54 68.60 2.03 45.01 16 28 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 29 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 30 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 31 H 0.07 1.61 7.92 -2.39 -0.02 1.59 16 32 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.09 1.87 7.23 -2.38 -0.02 1.85 16 34 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 35 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.10 0.63 6.02 -2.39 -0.01 0.62 16 37 H 0.12 1.18 7.34 -2.39 -0.02 1.16 16 38 H 0.10 1.83 6.60 -2.39 -0.02 1.81 16 39 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.08 1.97 6.33 -2.39 -0.02 1.96 16 42 H 0.06 1.57 6.89 -2.39 -0.02 1.56 16 43 H 0.08 1.34 8.06 -2.39 -0.02 1.32 16 44 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.03 1.04 7.05 -2.39 -0.02 1.02 16 46 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 48 H 0.04 1.47 5.56 -2.39 -0.01 1.45 16 49 H 0.00 -0.08 6.73 -2.39 -0.02 -0.09 16 50 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 51 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -69.24 392.12 2.13 -67.10 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.94 Total: 13.21 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: 5.28 Total: -14.35 kcal Atomic # 7 Polarization: -91.36 SS G_CDS: -6.87 Total: -98.23 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.76 Total: -12.74 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -69.24 2.13 -67.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038825.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.327 kcal (2) G-P(sol) polarization free energy of solvation -69.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds