Wall clock time and date at job start Wed Apr 1 2020 04:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41386 * 126.80015 * 2 1 4 4 C 1.35443 * 103.98695 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.78074 * 179.97438 * 4 3 2 6 6 C 1.50695 * 115.54823 * 327.66674 * 5 4 3 7 7 O 1.21289 * 119.99911 * 98.55914 * 6 5 4 8 8 N 1.34780 * 120.00210 * 278.28649 * 6 5 4 9 9 C 1.46504 * 120.00179 * 175.13331 * 8 6 5 10 10 C 1.52998 * 109.46874 * 179.97438 * 9 8 6 11 11 C 1.53005 * 109.49550 * 60.00271 * 10 9 8 12 12 C 1.53038 * 109.49671 * 180.02562 * 10 9 8 13 13 C 1.53034 * 109.54205 * 181.28713 * 12 10 9 14 14 C 1.53193 * 109.33617 * 298.68486 * 13 12 10 15 15 N 1.46924 * 108.77873 * 54.62069 * 14 13 12 16 16 C 1.36929 * 120.63427 * 126.41067 * 15 14 13 17 17 H 1.08001 * 120.00080 * 329.94443 * 16 15 14 18 18 C 1.38814 * 120.00286 * 149.94405 * 16 15 14 19 19 N 1.31612 * 120.00112 * 161.20576 * 18 16 15 20 20 Si 1.86803 * 119.99582 * 341.20236 * 18 16 15 21 21 H 1.48493 * 109.47023 * 95.03914 * 20 18 16 22 22 H 1.48502 * 109.47087 * 215.03356 * 20 18 16 23 23 H 1.48500 * 109.47440 * 335.03500 * 20 18 16 24 24 C 1.46924 * 118.73499 * 306.39221 * 15 14 13 25 25 C 1.53006 * 117.51817 * 113.36451 * 5 4 3 26 26 C 1.53001 * 117.50088 * 181.99840 * 5 4 3 27 27 O 1.34050 * 106.44636 * 0.24195 * 4 3 2 28 28 N 1.20918 * 111.56271 * 359.56764 * 27 4 3 29 29 H 1.08998 * 109.46739 * 89.99925 * 1 2 3 30 30 H 1.08998 * 109.46639 * 209.99505 * 1 2 3 31 31 H 1.08997 * 109.47407 * 330.00258 * 1 2 3 32 32 H 1.07994 * 128.00661 * 0.04014 * 3 2 1 33 33 H 0.97003 * 119.99700 * 355.13409 * 8 6 5 34 34 H 1.08998 * 109.47047 * 300.00368 * 9 8 6 35 35 H 1.09004 * 109.46739 * 60.00360 * 9 8 6 36 36 H 1.09002 * 109.46800 * 60.00124 * 11 10 9 37 37 H 1.09002 * 109.46677 * 179.97438 * 11 10 9 38 38 H 1.08996 * 109.47526 * 299.99867 * 11 10 9 39 39 H 1.09004 * 109.46251 * 301.34370 * 12 10 9 40 40 H 1.09003 * 109.46313 * 61.29597 * 12 10 9 41 41 H 1.08995 * 109.50130 * 178.71434 * 13 12 10 42 42 H 1.09001 * 109.47348 * 58.63456 * 13 12 10 43 43 H 1.08999 * 109.58697 * 294.82544 * 14 13 12 44 44 H 1.09008 * 109.70277 * 174.47249 * 14 13 12 45 45 H 0.97007 * 119.99594 * 179.97438 * 19 18 16 46 46 H 1.09001 * 109.58531 * 293.82007 * 24 15 14 47 47 H 1.08996 * 109.70716 * 173.46802 * 24 15 14 48 48 H 1.08999 * 117.49374 * 214.97237 * 25 5 4 49 49 H 1.08993 * 117.49972 * 0.02562 * 25 5 4 50 50 H 1.08997 * 117.49807 * 359.96942 * 26 5 4 51 51 H 1.08995 * 117.50062 * 144.99951 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1321 0.0000 4 6 3.6024 0.6070 -0.0006 5 6 4.9022 1.3697 -0.0014 6 6 4.8809 2.6893 -0.7287 7 8 4.7421 3.7219 -0.1077 8 7 5.0215 2.7226 -2.0688 9 6 4.8944 3.9930 -2.7874 10 6 5.0969 3.7542 -4.2850 11 6 4.0387 2.7730 -4.7933 12 6 4.9649 5.0809 -5.0362 13 6 5.1355 4.8383 -6.5375 14 6 6.5321 4.2680 -6.8038 15 7 6.7200 3.0702 -5.9738 16 6 7.0998 1.8823 -6.5390 17 1 6.8122 1.6508 -7.5540 18 6 7.8545 0.9754 -5.8076 19 7 7.9109 -0.2856 -6.1803 20 14 8.7900 1.5450 -4.2943 21 1 7.9686 1.2973 -3.0823 22 1 10.0663 0.7932 -4.1894 23 1 9.0788 2.9972 -4.4083 24 6 6.4931 3.1716 -4.5258 25 6 5.7849 1.2636 1.2438 26 6 6.1979 0.5575 -0.0493 27 8 3.4538 -0.7253 -0.0063 28 7 2.2869 -1.0422 -0.0006 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3632 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 2.0709 2.1743 0.0006 33 1 5.2069 1.9054 -2.5574 34 1 3.9018 4.4094 -2.6163 35 1 5.6489 4.6918 -2.4260 36 1 3.0457 3.1891 -4.6229 37 1 4.1831 2.6035 -5.8603 38 1 4.1330 1.8277 -4.2589 39 1 3.9807 5.5093 -4.8466 40 1 5.7340 5.7719 -4.6909 41 1 5.0186 5.7799 -7.0739 42 1 4.3817 4.1288 -6.8789 43 1 7.2858 5.0124 -6.5471 44 1 6.6256 4.0013 -7.8566 45 1 8.4386 -0.9191 -5.6693 46 1 7.2436 3.8266 -4.0832 47 1 6.5592 2.1822 -4.0732 48 1 6.3502 2.1482 1.5368 49 1 5.4259 0.6416 2.0637 50 1 6.1103 -0.5285 -0.0797 51 1 7.0350 0.9777 -0.6068 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278673142.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:46 Heat of formation + Delta-G solvation = 51.683323 kcal Electronic energy + Delta-G solvation = -32454.330400 eV Core-core repulsion = 28357.724777 eV Total energy + Delta-G solvation = -4096.605623 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -46.05179 -41.49842 -40.23163 -37.95260 -36.46387 -35.84425 -34.92084 -33.19237 -32.62018 -32.24999 -29.65907 -28.22188 -27.75718 -27.14220 -25.53799 -24.42105 -24.09081 -23.49462 -22.38363 -21.85341 -20.65622 -19.89279 -19.07576 -18.70043 -18.57968 -17.83596 -17.30928 -16.98502 -16.57752 -16.12034 -15.82094 -15.65573 -15.34000 -15.24445 -15.05928 -14.71265 -14.60335 -14.36894 -14.24379 -14.00994 -13.97157 -13.76202 -13.57798 -13.46888 -13.20484 -12.88969 -12.73048 -12.59386 -12.51329 -12.34175 -12.24500 -12.09729 -12.01352 -11.96252 -11.59599 -11.52668 -11.33534 -11.08780 -11.06294 -11.02242 -10.63890 -10.32123 -10.20797 -8.83391 -8.14395 -5.47860 0.24670 1.10226 1.13210 1.24743 1.41274 1.48475 1.74566 2.21688 2.40813 2.51333 3.07345 3.09594 3.17140 3.32772 3.41870 3.62551 3.69507 3.76173 3.86660 3.87370 3.95497 4.16539 4.31187 4.36319 4.41890 4.45445 4.49682 4.54885 4.58247 4.64967 4.67855 4.71778 4.76037 4.78160 4.81497 4.82130 4.91119 4.96512 4.98024 5.04780 5.12950 5.15558 5.17788 5.23780 5.30955 5.38436 5.43321 5.67149 5.91449 6.16408 6.27899 6.94041 6.95693 7.13307 7.65150 8.07188 9.05601 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010741 B = 0.003888 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.285040 B = 7200.044845 C = 7851.226219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.021 3.979 3 C -0.222 4.222 4 C 0.014 3.986 5 C -0.110 4.110 6 C 0.564 3.436 7 O -0.553 6.553 8 N -0.715 5.715 9 C 0.135 3.865 10 C -0.083 4.083 11 C -0.122 4.122 12 C -0.093 4.093 13 C -0.127 4.127 14 C 0.138 3.862 15 N -0.614 5.614 16 C -0.243 4.243 17 H 0.049 0.951 18 C -0.027 4.027 19 N -0.955 5.955 20 Si 0.936 3.064 21 H -0.263 1.263 22 H -0.316 1.316 23 H -0.268 1.268 24 C 0.140 3.860 25 C -0.106 4.106 26 C -0.153 4.153 27 O 0.089 5.911 28 N -0.390 5.390 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.181 0.819 33 H 0.404 0.596 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.052 0.948 38 H 0.033 0.967 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.058 0.942 43 H 0.030 0.970 44 H 0.051 0.949 45 H 0.260 0.740 46 H 0.023 0.977 47 H 0.048 0.952 48 H 0.119 0.881 49 H 0.128 0.872 50 H 0.124 0.876 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.950 7.822 13.682 19.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.137 4.137 3 C -0.244 4.244 4 C -0.050 4.050 5 C -0.115 4.115 6 C 0.349 3.651 7 O -0.431 6.431 8 N -0.365 5.365 9 C 0.011 3.989 10 C -0.085 4.085 11 C -0.180 4.180 12 C -0.131 4.131 13 C -0.166 4.166 14 C 0.013 3.987 15 N -0.338 5.338 16 C -0.373 4.373 17 H 0.067 0.933 18 C -0.222 4.222 19 N -0.601 5.601 20 Si 0.765 3.235 21 H -0.189 1.189 22 H -0.245 1.245 23 H -0.193 1.193 24 C 0.014 3.986 25 C -0.143 4.143 26 C -0.190 4.190 27 O 0.026 5.974 28 N -0.098 5.098 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.122 0.878 32 H 0.198 0.802 33 H 0.240 0.760 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.105 0.895 42 H 0.077 0.923 43 H 0.048 0.952 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.041 0.959 47 H 0.066 0.934 48 H 0.138 0.862 49 H 0.146 0.854 50 H 0.142 0.858 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.217 7.122 14.095 19.966 hybrid contribution 1.016 -0.078 -0.077 1.022 sum -11.201 7.044 14.018 19.277 Atomic orbital electron populations 1.20362 0.83241 1.05140 1.04573 1.24177 1.00696 0.87941 1.00899 1.22551 0.90650 1.01797 1.09356 1.22842 0.95713 0.83549 1.02884 1.19346 0.88635 0.94990 1.08484 1.19031 0.75747 0.88365 0.81953 1.90687 1.50461 1.34684 1.67277 1.46190 1.71104 1.12530 1.06724 1.21514 1.02599 0.84666 0.90074 1.21229 0.96179 0.97940 0.93186 1.21669 0.97543 0.97356 1.01388 1.21389 1.02794 0.94270 0.94657 1.21936 0.97146 1.01057 0.96420 1.21169 0.95683 0.87365 0.94455 1.44367 1.79426 1.07019 1.02982 1.18801 1.26119 0.93156 0.99197 0.93327 1.25869 0.99512 0.95465 1.01381 1.69946 1.44112 1.02889 1.43159 0.86061 0.78237 0.77978 0.81248 1.18909 1.24509 1.19290 1.21339 0.94333 0.98099 0.84789 1.23288 0.97216 1.03311 0.90478 1.23359 0.93560 1.00763 1.01339 1.84788 1.21929 1.22358 1.68335 1.73856 0.89428 1.24888 1.21667 0.89038 0.89911 0.87786 0.80166 0.75988 0.89664 0.91326 0.91277 0.92877 0.94837 0.89641 0.91540 0.89544 0.92307 0.95232 0.93055 0.93060 0.95943 0.93406 0.86228 0.85417 0.85810 0.87605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.47 71.24 0.75 -0.37 16 2 C 0.02 0.50 7.33 43.58 0.32 0.82 16 3 C -0.22 -5.23 10.63 22.40 0.24 -4.99 16 4 C 0.01 0.35 6.75 25.04 0.17 0.52 16 5 C -0.11 -2.69 2.39 -53.67 -0.13 -2.82 16 6 C 0.56 15.80 6.62 87.65 0.58 16.38 16 7 O -0.55 -17.72 17.02 -3.06 -0.05 -17.77 16 8 N -0.71 -20.17 4.99 -463.04 -2.31 -22.48 16 9 C 0.13 3.56 4.57 86.38 0.40 3.95 16 10 C -0.08 -2.43 0.53 -52.11 -0.03 -2.46 16 11 C -0.12 -3.72 7.81 71.98 0.56 -3.16 16 12 C -0.09 -2.28 4.71 30.62 0.14 -2.14 16 13 C -0.13 -3.44 5.74 30.67 0.18 -3.26 16 14 C 0.14 4.94 6.52 86.36 0.56 5.50 16 15 N -0.61 -26.94 2.18 -699.11 -1.52 -28.46 16 16 C -0.24 -13.20 10.02 84.04 0.84 -12.35 16 17 H 0.05 2.93 8.06 -2.91 -0.02 2.91 16 18 C -0.03 -1.53 5.24 84.86 0.45 -1.09 16 19 N -0.95 -58.32 13.97 21.65 0.30 -58.02 16 20 Si 0.94 44.59 24.38 68.60 1.67 46.26 16 21 H -0.26 -11.25 6.76 99.48 0.67 -10.58 16 22 H -0.32 -15.65 7.11 99.48 0.71 -14.94 16 23 H -0.27 -12.52 6.44 99.48 0.64 -11.88 16 24 C 0.14 5.39 2.61 86.36 0.23 5.61 16 25 C -0.11 -2.04 9.87 30.60 0.30 -1.74 16 26 C -0.15 -3.39 9.89 30.60 0.30 -3.09 16 27 O 0.09 2.48 10.96 71.54 0.78 3.26 16 28 N -0.39 -10.96 12.07 -49.55 -0.60 -11.56 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.10 1.06 8.14 -2.39 -0.02 1.05 16 32 H 0.18 3.77 8.06 -2.91 -0.02 3.75 16 33 H 0.40 12.23 6.23 -92.71 -0.58 11.65 16 34 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.05 1.88 5.97 -2.39 -0.01 1.87 16 38 H 0.03 1.09 6.86 -2.39 -0.02 1.07 16 39 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.06 1.71 6.33 -2.39 -0.02 1.69 16 43 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.05 1.91 7.93 -2.38 -0.02 1.89 16 45 H 0.26 15.20 8.31 -92.70 -0.77 14.43 16 46 H 0.02 0.89 6.92 -2.39 -0.02 0.87 16 47 H 0.05 2.03 3.69 -2.39 -0.01 2.02 16 48 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 50 H 0.12 2.55 7.99 -2.39 -0.02 2.53 16 51 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -69.06 399.78 4.39 -64.67 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.26 Total: 28.78 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: 5.86 Total: -4.68 kcal Atomic # 7 Polarization: -116.40 SS G_CDS: -4.13 Total: -120.53 kcal Atomic # 8 Polarization: -15.24 SS G_CDS: 0.73 Total: -14.51 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.67 Total: 46.26 kcal Total: -69.06 4.39 -64.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278673142.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.353 kcal (2) G-P(sol) polarization free energy of solvation -69.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds