Wall clock time and date at job start Wed Apr 1 2020 04:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30178 * 126.80397 * 2 1 4 4 O 1.20917 * 111.60672 * 180.25106 * 3 2 1 5 5 C 1.34043 * 111.57005 * 359.74796 * 4 3 2 6 6 C 1.50697 * 126.77926 * 180.02562 * 5 4 3 7 7 C 1.35458 * 106.44108 * 359.97438 * 5 4 3 8 8 C 1.50694 * 128.00183 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47062 * 90.00496 * 8 7 5 10 10 C 1.50704 * 109.47122 * 179.97438 * 9 8 7 11 11 O 1.21282 * 120.00158 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00081 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99809 * 180.02562 * 12 10 9 14 14 C 1.51229 * 111.47176 * 68.10149 * 13 12 10 15 15 C 1.55794 * 104.61902 * 84.06326 * 14 13 12 16 16 C 1.56289 * 105.88759 * 7.24345 * 15 14 13 17 17 C 1.50514 * 101.78910 * 24.26324 * 16 15 14 18 18 H 1.08996 * 108.13248 * 66.22272 * 17 16 15 19 19 N 1.42700 * 128.17158 * 198.64251 * 17 16 15 20 20 C 1.36932 * 127.10974 * 331.77334 * 19 17 16 21 21 H 1.08009 * 119.99585 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00537 * 180.02562 * 20 19 17 23 23 N 1.31622 * 119.99744 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00054 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46983 * 60.00043 * 24 22 20 26 26 H 1.48503 * 109.46831 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47057 * 299.99733 * 24 22 20 28 28 C 1.49307 * 105.79174 * 151.74261 * 19 17 16 29 29 C 1.52135 * 111.09307 * 288.30455 * 13 12 10 30 30 H 1.09005 * 109.47048 * 270.17020 * 1 2 3 31 31 H 1.08995 * 109.47189 * 30.16544 * 1 2 3 32 32 H 1.08996 * 109.47384 * 150.16952 * 1 2 3 33 33 H 1.09000 * 109.46861 * 269.99495 * 6 5 4 34 34 H 1.08994 * 109.47454 * 29.99246 * 6 5 4 35 35 H 1.08995 * 109.47110 * 150.00027 * 6 5 4 36 36 H 1.08993 * 109.47758 * 330.00297 * 8 7 5 37 37 H 1.09004 * 109.47060 * 210.00285 * 8 7 5 38 38 H 1.08998 * 109.47163 * 60.00040 * 9 8 7 39 39 H 1.08994 * 109.46790 * 299.99365 * 9 8 7 40 40 H 0.96993 * 119.99423 * 359.97438 * 12 10 9 41 41 H 1.09001 * 110.40332 * 202.84267 * 14 13 12 42 42 H 1.08992 * 110.40869 * 325.16294 * 14 13 12 43 43 H 1.08997 * 110.19423 * 248.13905 * 15 14 13 44 44 H 1.09002 * 110.17104 * 126.33618 * 15 14 13 45 45 H 1.09002 * 110.97072 * 266.12667 * 16 15 14 46 46 H 1.09003 * 110.97182 * 142.40076 * 16 15 14 47 47 H 0.96995 * 119.99964 * 179.97438 * 23 22 20 48 48 H 1.08991 * 110.04996 * 110.60342 * 28 19 17 49 49 H 1.08998 * 110.04512 * 232.07808 * 28 19 17 50 50 H 1.09004 * 111.15107 * 168.13153 * 29 13 12 51 51 H 1.09005 * 111.18511 * 43.93077 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7254 -0.0049 5 6 3.6025 -0.6068 -0.0035 6 6 4.9022 -1.3695 -0.0077 7 6 2.3539 -1.1320 0.0038 8 6 1.9591 -2.5863 0.0077 9 6 1.8330 -3.0766 1.4515 10 6 1.4376 -4.5309 1.4555 11 8 1.2733 -5.1175 0.4067 12 7 1.2665 -5.1796 2.6244 13 6 0.8827 -6.5934 2.6282 14 6 1.9953 -7.4705 2.0993 15 6 2.9199 -7.7170 3.3288 16 6 2.1702 -7.1068 4.5569 17 6 0.7384 -7.1484 4.0949 18 1 0.4423 -8.1932 4.0013 19 7 -0.3745 -6.4148 4.6048 20 6 -0.5415 -5.9481 5.8812 21 1 0.2213 -6.1255 6.6251 22 6 -1.6909 -5.2471 6.2192 23 7 -2.6201 -5.0306 5.3125 24 14 -1.9183 -4.6099 7.9604 25 1 -0.8156 -3.6722 8.2922 26 1 -3.2186 -3.8999 8.0617 27 1 -1.9011 -5.7506 8.9111 28 6 -1.3189 -6.2606 3.4587 29 6 -0.5634 -6.7693 2.1894 30 1 -0.3633 0.0031 1.0277 31 1 -0.3633 0.8885 -0.5164 32 1 -0.3634 -0.8915 -0.5112 33 1 5.2111 -1.5551 -1.0364 34 1 5.6682 -0.7850 0.5018 35 1 4.7673 -2.3201 0.5081 36 1 2.7200 -3.1708 -0.5093 37 1 1.0023 -2.7044 -0.5010 38 1 1.0720 -2.4922 1.9686 39 1 2.7897 -2.9586 1.9601 40 1 1.3983 -4.7105 3.4631 41 1 1.5929 -8.4142 1.7311 42 1 2.5411 -6.9564 1.3082 43 1 3.8772 -7.2158 3.1862 44 1 3.0730 -8.7862 3.4755 45 1 2.4915 -6.0815 4.7401 46 1 2.3115 -7.7223 5.4454 47 1 -3.4235 -4.5411 5.5488 48 1 -2.2125 -6.8613 3.6275 49 1 -1.5904 -5.2121 3.3369 50 1 -0.7894 -7.8169 1.9906 51 1 -0.7900 -6.1493 1.3220 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284069082.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:54 Heat of formation + Delta-G solvation = 46.583329 kcal Electronic energy + Delta-G solvation = -31975.610854 eV Core-core repulsion = 27878.784079 eV Total energy + Delta-G solvation = -4096.826775 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.00516 -40.48820 -38.33752 -35.88055 -34.45918 -33.88705 -33.03237 -31.98143 -31.49279 -29.85369 -28.75657 -27.90680 -26.97087 -26.01309 -24.89070 -24.05170 -21.64079 -20.62945 -20.40468 -20.10340 -19.57822 -18.70237 -17.77642 -17.15132 -16.61391 -16.48429 -15.77521 -15.53534 -14.69926 -14.63300 -14.50064 -14.13976 -13.96079 -13.74571 -13.64835 -13.59040 -13.27294 -12.97614 -12.73487 -12.68925 -12.57988 -12.37714 -12.32532 -12.07346 -11.90194 -11.47150 -11.43125 -11.27474 -11.04760 -10.94450 -10.85413 -10.80059 -10.52027 -10.33894 -10.07377 -9.99162 -9.92536 -9.73088 -9.57582 -9.28513 -9.04871 -8.71077 -8.45934 -6.91462 -5.79751 -3.14601 1.34542 2.09947 2.99628 3.05379 3.34255 3.39639 3.40840 3.65112 4.10979 4.33810 4.40790 4.60231 4.68021 4.82318 5.00088 5.09126 5.13376 5.16813 5.20075 5.24435 5.32644 5.42067 5.42988 5.44548 5.52274 5.57139 5.62338 5.65850 5.72624 5.79437 5.80316 5.92140 5.95692 5.96478 6.02452 6.11848 6.19113 6.22993 6.29508 6.34394 6.40751 6.47504 6.63578 6.79440 6.87462 7.19867 7.47613 7.55337 7.72508 8.06511 8.14725 8.19745 8.70203 9.08117 9.74718 10.43796 11.32210 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009851 B = 0.003350 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.638940 B = 8357.156334 C = 9850.915708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.026 3.974 3 N -0.371 5.371 4 O 0.094 5.906 5 C -0.034 4.034 6 C -0.074 4.074 7 C -0.195 4.195 8 C -0.022 4.022 9 C -0.137 4.137 10 C 0.513 3.487 11 O -0.552 6.552 12 N -0.689 5.689 13 C 0.131 3.869 14 C -0.111 4.111 15 C -0.116 4.116 16 C -0.114 4.114 17 C 0.157 3.843 18 H 0.021 0.979 19 N -0.584 5.584 20 C -0.233 4.233 21 H 0.078 0.922 22 C -0.002 4.002 23 N -0.918 5.918 24 Si 0.909 3.091 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.179 3.821 29 C -0.138 4.138 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.403 0.597 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.254 0.746 48 H 0.034 0.966 49 H 0.064 0.936 50 H 0.063 0.937 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.081 3.558 -10.138 16.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 N -0.077 5.077 4 O 0.029 5.971 5 C -0.098 4.098 6 C -0.131 4.131 7 C -0.198 4.198 8 C -0.060 4.060 9 C -0.177 4.177 10 C 0.299 3.701 11 O -0.431 6.431 12 N -0.339 5.339 13 C 0.043 3.957 14 C -0.149 4.149 15 C -0.155 4.155 16 C -0.152 4.152 17 C 0.047 3.953 18 H 0.038 0.962 19 N -0.307 5.307 20 C -0.361 4.361 21 H 0.096 0.904 22 C -0.199 4.199 23 N -0.564 5.564 24 Si 0.739 3.261 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.055 3.945 29 C -0.178 4.178 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.239 0.761 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.064 0.936 48 H 0.052 0.948 49 H 0.083 0.917 50 H 0.082 0.918 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.538 4.582 -10.706 17.111 hybrid contribution -0.352 -0.131 1.476 1.523 sum 12.186 4.451 -9.230 15.922 Atomic orbital electron populations 1.20208 0.85878 1.03774 1.03792 1.23499 0.99005 0.88474 1.02310 1.73832 0.89290 1.24004 1.20562 1.84780 1.21683 1.22575 1.68038 1.24262 0.98258 0.83793 1.03467 1.20339 0.90014 0.98691 1.04054 1.21044 0.91522 0.97730 1.09549 1.19578 1.03475 0.87020 0.95930 1.21627 1.03678 0.93989 0.98421 1.20407 0.77188 0.88443 0.84017 1.90649 1.52110 1.68862 1.31486 1.45725 1.68589 1.11354 1.08256 1.21505 0.93003 0.80528 1.00630 1.21868 0.96486 0.99280 0.97301 1.22834 0.98073 1.00222 0.94324 1.21826 0.95525 1.00766 0.97106 1.20835 0.89206 0.95030 0.90224 0.96185 1.43655 1.15920 1.63632 1.07480 1.18961 1.02941 1.28998 0.85213 0.90390 1.24780 0.96721 1.00659 0.97770 1.69906 1.09299 1.45089 1.32147 0.86260 0.77067 0.78636 0.84121 1.21184 1.21631 1.21173 1.22003 0.90511 1.00378 0.81595 1.22780 0.94330 1.00802 0.99840 0.89837 0.90670 0.89754 0.89473 0.89890 0.88946 0.89879 0.89661 0.88823 0.89361 0.76131 0.91284 0.91245 0.92309 0.92011 0.91678 0.91850 0.93617 0.94772 0.91728 0.91809 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.39 36.00 0.37 -0.45 16 2 C 0.03 0.33 7.33 -82.10 -0.60 -0.28 16 3 N -0.37 -5.11 12.07 33.42 0.40 -4.71 16 4 O 0.09 1.17 11.20 17.17 0.19 1.36 16 5 C -0.03 -0.36 7.49 -35.30 -0.26 -0.62 16 6 C -0.07 -0.48 10.25 36.00 0.37 -0.11 16 7 C -0.19 -2.23 5.57 -104.42 -0.58 -2.81 16 8 C -0.02 -0.25 4.75 -27.88 -0.13 -0.38 16 9 C -0.14 -1.64 5.68 -27.88 -0.16 -1.80 16 10 C 0.51 7.86 7.16 -10.98 -0.08 7.78 16 11 O -0.55 -9.79 14.14 5.56 0.08 -9.71 16 12 N -0.69 -11.22 4.39 -46.57 -0.20 -11.43 16 13 C 0.13 2.28 0.40 -130.71 -0.05 2.22 16 14 C -0.11 -1.66 6.04 -26.13 -0.16 -1.82 16 15 C -0.12 -1.55 6.94 -23.47 -0.16 -1.71 16 16 C -0.11 -1.80 6.46 -26.21 -0.17 -1.97 16 17 C 0.16 3.02 2.64 -68.72 -0.18 2.84 16 18 H 0.02 0.42 7.94 -51.93 -0.41 0.01 16 19 N -0.58 -13.64 3.12 -162.68 -0.51 -14.15 16 20 C -0.23 -6.00 10.29 -15.06 -0.15 -6.16 16 21 H 0.08 1.94 7.83 -52.48 -0.41 1.53 16 22 C 0.00 -0.06 5.49 -17.43 -0.10 -0.16 16 23 N -0.92 -25.69 10.55 55.49 0.59 -25.10 16 24 Si 0.91 21.15 29.55 -169.99 -5.02 16.12 16 25 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 28 C 0.18 4.15 5.33 -0.75 0.00 4.15 16 29 C -0.14 -2.67 6.19 -25.44 -0.16 -2.83 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.80 7.65 -51.93 -0.40 0.41 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.55 8.05 -51.93 -0.42 0.13 16 36 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 37 H 0.08 1.03 7.61 -51.93 -0.40 0.64 16 38 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.40 6.69 7.81 -40.82 -0.32 6.37 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.07 1.07 6.86 -51.93 -0.36 0.72 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.06 1.02 7.38 -51.93 -0.38 0.64 16 46 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 48 H 0.03 0.88 7.98 -51.93 -0.41 0.46 16 49 H 0.06 1.67 7.05 -51.93 -0.37 1.30 16 50 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 51 H 0.07 1.34 7.18 -51.93 -0.37 0.97 16 LS Contribution 403.99 15.07 6.09 6.09 Total: -1.00 -30.65 403.99 -9.05 -39.70 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -8.45 Total: 5.92 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -2.21 Total: -4.09 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 0.28 Total: -55.39 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.27 Total: -8.35 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -30.65 -9.05 -39.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284069082.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.280 kcal (2) G-P(sol) polarization free energy of solvation -30.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds