Wall clock time and date at job start Wed Apr 1 2020 04:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30178 * 126.80397 * 2 1 4 4 O 1.20917 * 111.60672 * 180.25106 * 3 2 1 5 5 C 1.34043 * 111.57005 * 359.74796 * 4 3 2 6 6 C 1.50697 * 126.77926 * 180.02562 * 5 4 3 7 7 C 1.35458 * 106.44108 * 359.97438 * 5 4 3 8 8 C 1.50694 * 128.00183 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47062 * 90.00496 * 8 7 5 10 10 C 1.50704 * 109.47122 * 179.97438 * 9 8 7 11 11 O 1.21282 * 120.00158 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00081 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99809 * 180.02562 * 12 10 9 14 14 C 1.51229 * 111.47176 * 68.10149 * 13 12 10 15 15 C 1.55794 * 104.61902 * 84.06326 * 14 13 12 16 16 C 1.56289 * 105.88759 * 7.24345 * 15 14 13 17 17 C 1.50514 * 101.78910 * 24.26324 * 16 15 14 18 18 H 1.08996 * 108.13248 * 66.22272 * 17 16 15 19 19 N 1.42700 * 128.17158 * 198.64251 * 17 16 15 20 20 C 1.36932 * 127.10974 * 331.77334 * 19 17 16 21 21 H 1.08009 * 119.99585 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00537 * 180.02562 * 20 19 17 23 23 N 1.31622 * 119.99744 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00054 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46983 * 60.00043 * 24 22 20 26 26 H 1.48503 * 109.46831 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47057 * 299.99733 * 24 22 20 28 28 C 1.49307 * 105.79174 * 151.74261 * 19 17 16 29 29 C 1.52135 * 111.09307 * 288.30455 * 13 12 10 30 30 H 1.09005 * 109.47048 * 270.17020 * 1 2 3 31 31 H 1.08995 * 109.47189 * 30.16544 * 1 2 3 32 32 H 1.08996 * 109.47384 * 150.16952 * 1 2 3 33 33 H 1.09000 * 109.46861 * 269.99495 * 6 5 4 34 34 H 1.08994 * 109.47454 * 29.99246 * 6 5 4 35 35 H 1.08995 * 109.47110 * 150.00027 * 6 5 4 36 36 H 1.08993 * 109.47758 * 330.00297 * 8 7 5 37 37 H 1.09004 * 109.47060 * 210.00285 * 8 7 5 38 38 H 1.08998 * 109.47163 * 60.00040 * 9 8 7 39 39 H 1.08994 * 109.46790 * 299.99365 * 9 8 7 40 40 H 0.96993 * 119.99423 * 359.97438 * 12 10 9 41 41 H 1.09001 * 110.40332 * 202.84267 * 14 13 12 42 42 H 1.08992 * 110.40869 * 325.16294 * 14 13 12 43 43 H 1.08997 * 110.19423 * 248.13905 * 15 14 13 44 44 H 1.09002 * 110.17104 * 126.33618 * 15 14 13 45 45 H 1.09002 * 110.97072 * 266.12667 * 16 15 14 46 46 H 1.09003 * 110.97182 * 142.40076 * 16 15 14 47 47 H 0.96995 * 119.99964 * 179.97438 * 23 22 20 48 48 H 1.08991 * 110.04996 * 110.60342 * 28 19 17 49 49 H 1.08998 * 110.04512 * 232.07808 * 28 19 17 50 50 H 1.09004 * 111.15107 * 168.13153 * 29 13 12 51 51 H 1.09005 * 111.18511 * 43.93077 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7254 -0.0049 5 6 3.6025 -0.6068 -0.0035 6 6 4.9022 -1.3695 -0.0077 7 6 2.3539 -1.1320 0.0038 8 6 1.9591 -2.5863 0.0077 9 6 1.8330 -3.0766 1.4515 10 6 1.4376 -4.5309 1.4555 11 8 1.2733 -5.1175 0.4067 12 7 1.2665 -5.1796 2.6244 13 6 0.8827 -6.5934 2.6282 14 6 1.9953 -7.4705 2.0993 15 6 2.9199 -7.7170 3.3288 16 6 2.1702 -7.1068 4.5569 17 6 0.7384 -7.1484 4.0949 18 1 0.4423 -8.1932 4.0013 19 7 -0.3745 -6.4148 4.6048 20 6 -0.5415 -5.9481 5.8812 21 1 0.2213 -6.1255 6.6251 22 6 -1.6909 -5.2471 6.2192 23 7 -2.6201 -5.0306 5.3125 24 14 -1.9183 -4.6099 7.9604 25 1 -0.8156 -3.6722 8.2922 26 1 -3.2186 -3.8999 8.0617 27 1 -1.9011 -5.7506 8.9111 28 6 -1.3189 -6.2606 3.4587 29 6 -0.5634 -6.7693 2.1894 30 1 -0.3633 0.0031 1.0277 31 1 -0.3633 0.8885 -0.5164 32 1 -0.3634 -0.8915 -0.5112 33 1 5.2111 -1.5551 -1.0364 34 1 5.6682 -0.7850 0.5018 35 1 4.7673 -2.3201 0.5081 36 1 2.7200 -3.1708 -0.5093 37 1 1.0023 -2.7044 -0.5010 38 1 1.0720 -2.4922 1.9686 39 1 2.7897 -2.9586 1.9601 40 1 1.3983 -4.7105 3.4631 41 1 1.5929 -8.4142 1.7311 42 1 2.5411 -6.9564 1.3082 43 1 3.8772 -7.2158 3.1862 44 1 3.0730 -8.7862 3.4755 45 1 2.4915 -6.0815 4.7401 46 1 2.3115 -7.7223 5.4454 47 1 -3.4235 -4.5411 5.5488 48 1 -2.2125 -6.8613 3.6275 49 1 -1.5904 -5.2121 3.3369 50 1 -0.7894 -7.8169 1.9906 51 1 -0.7900 -6.1493 1.3220 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284069082.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:53 Heat of formation + Delta-G solvation = 29.727878 kcal Electronic energy + Delta-G solvation = -31976.341761 eV Core-core repulsion = 27878.784079 eV Total energy + Delta-G solvation = -4097.557682 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -45.91969 -41.89328 -39.65653 -36.82319 -36.11710 -34.73314 -34.35971 -33.57498 -32.65816 -31.42388 -29.63926 -28.66969 -28.49742 -27.37135 -26.07251 -25.77069 -22.70027 -22.14076 -21.54482 -21.17094 -20.95071 -20.05382 -18.72443 -18.36703 -18.13517 -17.65337 -17.34252 -16.62122 -16.38973 -15.85416 -15.73908 -15.55144 -15.36775 -14.93662 -14.65822 -14.33331 -14.14930 -14.03535 -13.92499 -13.74928 -13.70928 -13.49381 -13.43579 -13.20960 -13.03803 -12.92688 -12.89400 -12.83079 -12.58889 -12.24417 -12.17505 -12.08599 -12.00817 -11.77773 -11.72253 -11.52287 -11.31579 -11.01298 -10.84011 -10.70464 -10.52344 -10.02529 -9.81140 -8.85032 -7.82550 -5.17820 0.50447 1.18363 1.48587 1.49960 1.56116 1.82885 2.21046 2.43134 2.51811 3.13418 3.22943 3.37772 3.54692 3.72812 3.81925 3.90213 3.94164 4.09069 4.14382 4.26903 4.33030 4.35567 4.40794 4.45622 4.46864 4.58979 4.62553 4.63234 4.69922 4.70694 4.74182 4.81524 4.84935 4.94286 4.98196 5.02531 5.06070 5.10592 5.11530 5.15785 5.17063 5.28091 5.32315 5.36787 5.51779 5.58634 5.62974 5.71500 5.87711 6.19957 6.77847 7.06332 7.31882 7.44048 7.79077 8.51512 9.28866 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009851 B = 0.003350 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.638940 B = 8357.156334 C = 9850.915708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.013 3.987 3 N -0.400 5.400 4 O 0.084 5.916 5 C -0.021 4.021 6 C -0.075 4.075 7 C -0.210 4.210 8 C -0.010 4.010 9 C -0.127 4.127 10 C 0.514 3.486 11 O -0.575 6.575 12 N -0.692 5.692 13 C 0.141 3.859 14 C -0.105 4.105 15 C -0.102 4.102 16 C -0.109 4.109 17 C 0.144 3.856 18 H 0.012 0.988 19 N -0.596 5.596 20 C -0.232 4.232 21 H 0.088 0.912 22 C -0.059 4.059 23 N -0.950 5.950 24 Si 0.970 3.030 25 H -0.274 1.274 26 H -0.302 1.302 27 H -0.281 1.281 28 C 0.191 3.809 29 C -0.128 4.128 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.402 0.598 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.244 0.756 48 H -0.003 1.003 49 H 0.031 0.969 50 H 0.074 0.926 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.267 2.919 -10.070 19.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.145 4.145 3 N -0.109 5.109 4 O 0.022 5.978 5 C -0.085 4.085 6 C -0.132 4.132 7 C -0.214 4.214 8 C -0.048 4.048 9 C -0.167 4.167 10 C 0.302 3.698 11 O -0.456 6.456 12 N -0.342 5.342 13 C 0.053 3.947 14 C -0.144 4.144 15 C -0.140 4.140 16 C -0.147 4.147 17 C 0.035 3.965 18 H 0.030 0.970 19 N -0.319 5.319 20 C -0.361 4.361 21 H 0.105 0.895 22 C -0.252 4.252 23 N -0.598 5.598 24 Si 0.799 3.201 25 H -0.200 1.200 26 H -0.228 1.228 27 H -0.207 1.207 28 C 0.067 3.933 29 C -0.167 4.167 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.132 0.868 40 H 0.237 0.763 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.054 0.946 48 H 0.015 0.985 49 H 0.050 0.950 50 H 0.093 0.907 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 15.780 3.928 -10.640 19.433 hybrid contribution -1.347 0.014 1.426 1.962 sum 14.432 3.942 -9.213 17.570 Atomic orbital electron populations 1.20262 0.85124 1.04389 1.03923 1.23877 0.99838 0.88850 1.01918 1.73823 0.89921 1.24920 1.22233 1.84744 1.21220 1.23704 1.68153 1.24966 0.99494 0.83049 1.00956 1.20592 0.88315 0.98723 1.05566 1.21057 0.91891 0.97412 1.11042 1.19441 1.03118 0.87031 0.95256 1.21592 1.04655 0.91225 0.99256 1.20899 0.76247 0.89484 0.83155 1.90639 1.53078 1.69702 1.32142 1.45770 1.68740 1.11052 1.08649 1.21435 0.92584 0.81783 0.98945 1.21858 0.95638 0.98828 0.98096 1.22767 0.98014 1.01517 0.91675 1.21840 0.92993 1.01351 0.98559 1.21060 0.89949 0.93848 0.91674 0.97045 1.43765 1.17461 1.63809 1.06915 1.19342 1.02677 1.27655 0.86395 0.89471 1.25514 0.96873 1.01795 1.01065 1.70123 1.09593 1.46365 1.33764 0.85280 0.76507 0.78062 0.80229 1.20024 1.22828 1.20733 1.21672 0.90169 0.97753 0.83747 1.22630 0.95704 1.01025 0.97334 0.89889 0.90100 0.89117 0.87728 0.88253 0.87802 0.88944 0.90985 0.89426 0.86796 0.76260 0.90639 0.91184 0.90048 0.90137 0.91513 0.91397 0.94633 0.98494 0.95027 0.90694 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.68 10.39 71.23 0.74 -0.94 16 2 C 0.01 0.33 7.33 43.57 0.32 0.65 16 3 N -0.40 -10.97 12.07 -49.56 -0.60 -11.57 16 4 O 0.08 2.02 11.20 71.62 0.80 2.82 16 5 C -0.02 -0.40 7.49 25.04 0.19 -0.21 16 6 C -0.08 -0.72 10.25 71.23 0.73 0.01 16 7 C -0.21 -4.54 5.57 -19.74 -0.11 -4.65 16 8 C -0.01 -0.22 4.75 29.85 0.14 -0.07 16 9 C -0.13 -2.83 5.68 29.85 0.17 -2.66 16 10 C 0.51 15.03 7.16 87.66 0.63 15.66 16 11 O -0.58 -19.63 14.14 -3.04 -0.04 -19.67 16 12 N -0.69 -21.71 4.39 -419.65 -1.84 -23.55 16 13 C 0.14 4.70 0.40 4.33 0.00 4.70 16 14 C -0.11 -2.86 6.04 30.98 0.19 -2.67 16 15 C -0.10 -2.30 6.94 32.70 0.23 -2.07 16 16 C -0.11 -3.15 6.46 30.93 0.20 -2.95 16 17 C 0.14 5.36 2.64 46.47 0.12 5.48 16 18 H 0.01 0.48 7.94 -2.39 -0.02 0.46 16 19 N -0.60 -28.17 3.12 -668.61 -2.09 -30.26 16 20 C -0.23 -11.98 10.29 84.03 0.86 -11.11 16 21 H 0.09 4.25 7.83 -2.91 -0.02 4.23 16 22 C -0.06 -3.20 5.49 84.86 0.47 -2.73 16 23 N -0.95 -55.21 10.55 21.65 0.23 -54.98 16 24 Si 0.97 43.91 29.55 68.60 2.03 45.94 16 25 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 26 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 27 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 28 C 0.19 9.24 5.33 86.96 0.46 9.70 16 29 C -0.13 -4.97 6.19 31.43 0.19 -4.77 16 30 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 31 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.09 1.75 7.65 -2.39 -0.02 1.73 16 33 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.10 0.81 8.05 -2.39 -0.02 0.79 16 36 H 0.09 1.78 8.04 -2.39 -0.02 1.76 16 37 H 0.07 1.71 7.61 -2.38 -0.02 1.69 16 38 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.40 12.88 7.81 -92.71 -0.72 12.15 16 41 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.07 1.93 6.86 -2.39 -0.02 1.92 16 43 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.07 1.91 7.38 -2.39 -0.02 1.89 16 46 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.24 14.08 8.31 -92.71 -0.77 13.31 16 48 H 0.00 -0.17 7.98 -2.39 -0.02 -0.19 16 49 H 0.03 1.72 7.05 -2.39 -0.02 1.70 16 50 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 51 H 0.06 2.44 7.18 -2.38 -0.02 2.42 16 Total: -1.00 -68.24 403.99 4.23 -64.01 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: 0.21 Total: 25.88 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 5.53 Total: 1.36 kcal Atomic # 7 Polarization: -116.05 SS G_CDS: -4.30 Total: -120.35 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: 0.76 Total: -16.85 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -68.24 4.23 -64.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284069082.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.741 kcal (2) G-P(sol) polarization free energy of solvation -68.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds