Wall clock time and date at job start Wed Apr 1 2020 04:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30173 * 126.80374 * 2 1 4 4 O 1.20920 * 111.60604 * 180.24997 * 3 2 1 5 5 C 1.34047 * 111.56741 * 359.73960 * 4 3 2 6 6 C 1.50698 * 126.77733 * 179.97438 * 5 4 3 7 7 C 1.35445 * 106.44471 * 0.02562 * 5 4 3 8 8 C 1.50698 * 128.00915 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.47231 * 89.99664 * 8 7 5 10 10 C 1.50700 * 109.47262 * 180.02562 * 9 8 7 11 11 O 1.21283 * 119.99812 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00406 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00524 * 179.97438 * 12 10 9 14 14 C 1.53578 * 112.24159 * 297.65020 * 13 12 10 15 15 C 1.54231 * 106.67270 * 238.23484 * 14 13 12 16 16 C 1.54754 * 104.15874 * 335.06365 * 15 14 13 17 17 C 1.55118 * 112.65491 * 176.69442 * 13 12 10 18 18 H 1.08996 * 111.79783 * 23.26486 * 17 13 12 19 19 N 1.46986 * 107.08981 * 260.47239 * 17 13 12 20 20 C 1.36929 * 125.57872 * 181.83943 * 19 17 13 21 21 H 1.08004 * 120.00341 * 359.97438 * 20 19 17 22 22 C 1.38815 * 120.00031 * 179.71466 * 20 19 17 23 23 N 1.31617 * 119.99916 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99958 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47093 * 60.00562 * 24 22 20 26 26 H 1.48495 * 109.47002 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47239 * 300.00281 * 24 22 20 28 28 C 1.47366 * 108.83964 * 1.57629 * 19 17 13 29 29 C 1.54872 * 104.82493 * 335.58156 * 28 19 17 30 30 H 1.08995 * 109.47693 * 270.16988 * 1 2 3 31 31 H 1.09000 * 109.47228 * 30.17422 * 1 2 3 32 32 H 1.09006 * 109.47486 * 150.17021 * 1 2 3 33 33 H 1.09003 * 109.47276 * 270.00647 * 6 5 4 34 34 H 1.09005 * 109.47043 * 30.00389 * 6 5 4 35 35 H 1.08992 * 109.47061 * 150.00488 * 6 5 4 36 36 H 1.09004 * 109.46621 * 329.99634 * 8 7 5 37 37 H 1.09000 * 109.47397 * 210.00443 * 8 7 5 38 38 H 1.08996 * 109.47581 * 60.00232 * 9 8 7 39 39 H 1.09006 * 109.46992 * 300.00294 * 9 8 7 40 40 H 0.97001 * 119.99803 * 359.97438 * 12 10 9 41 41 H 1.09001 * 110.01961 * 357.54158 * 14 13 12 42 42 H 1.09000 * 110.02058 * 118.88698 * 14 13 12 43 43 H 1.09005 * 110.48692 * 93.72857 * 15 14 13 44 44 H 1.08994 * 110.49240 * 216.25739 * 15 14 13 45 45 H 1.08997 * 110.66770 * 156.23473 * 16 15 14 46 46 H 1.09000 * 110.66767 * 279.20767 * 16 15 14 47 47 H 0.97000 * 120.00284 * 179.97438 * 23 22 20 48 48 H 1.08996 * 110.36704 * 94.41397 * 28 19 17 49 49 H 1.08996 * 110.36949 * 216.74129 * 28 19 17 50 50 H 1.08995 * 110.97045 * 155.18891 * 29 28 19 51 51 H 1.08997 * 110.96312 * 278.94924 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0049 5 6 3.6024 -0.6069 -0.0032 6 6 4.9021 -1.3696 -0.0085 7 6 2.3539 -1.1321 0.0030 8 6 1.9590 -2.5864 0.0066 9 6 1.8318 -3.0767 1.4503 10 6 1.4374 -4.5312 1.4539 11 8 1.2737 -5.1177 0.4050 12 7 1.2656 -5.1799 2.6227 13 6 0.8817 -6.5937 2.6262 14 6 -0.4885 -6.8257 1.9725 15 6 -1.3777 -7.5011 3.0364 16 6 -0.3718 -8.1993 3.9827 17 6 0.8107 -7.1899 4.0565 18 1 0.6533 -6.4178 4.8095 19 7 2.0639 -7.9244 4.2810 20 6 2.3830 -8.6288 5.4111 21 1 1.6845 -8.6758 6.2335 22 6 3.6021 -9.2870 5.4976 23 7 4.4515 -9.2336 4.4935 24 14 4.0371 -10.2485 7.0389 25 1 3.0338 -11.3224 7.2521 26 1 5.3842 -10.8532 6.8813 27 1 4.0395 -9.3338 8.2088 28 6 2.9180 -7.7840 3.0884 29 6 1.9342 -7.4912 1.9287 30 1 -0.3634 0.0030 1.0276 31 1 -0.3634 0.8884 -0.5165 32 1 -0.3634 -0.8915 -0.5112 33 1 5.2103 -1.5553 -1.0375 34 1 5.6685 -0.7850 0.5004 35 1 4.7676 -2.3201 0.5076 36 1 2.7204 -3.1709 -0.5099 37 1 1.0027 -2.7045 -0.5029 38 1 1.0704 -2.4922 1.9668 39 1 2.7882 -2.9586 1.9597 40 1 1.3961 -4.7107 3.4615 41 1 -0.9246 -5.8730 1.6719 42 1 -0.3827 -7.4775 1.1053 43 1 -1.9572 -6.7542 3.5793 44 1 -2.0392 -8.2326 2.5723 45 1 -0.8113 -8.3487 4.9689 46 1 -0.0430 -9.1493 3.5614 47 1 5.3035 -9.6932 4.5541 48 1 3.6128 -6.9538 3.2150 49 1 3.4618 -8.7096 2.9000 50 1 2.4317 -6.9538 1.1214 51 1 1.4800 -8.4113 1.5609 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284069086.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:01 Heat of formation + Delta-G solvation = 34.765871 kcal Electronic energy + Delta-G solvation = -31455.776423 eV Core-core repulsion = 27358.437204 eV Total energy + Delta-G solvation = -4097.339219 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.09635 -40.21627 -38.28340 -35.99757 -34.28555 -33.97583 -33.40646 -31.96648 -31.36808 -29.73029 -28.89985 -27.98801 -26.73883 -26.30128 -24.81874 -23.85019 -21.76224 -20.94769 -20.26862 -20.00253 -19.44714 -18.79542 -17.85032 -17.22585 -17.03591 -16.64448 -15.75805 -15.62569 -14.93075 -14.58137 -14.40492 -14.07503 -13.97937 -13.71305 -13.57050 -13.37797 -13.25636 -13.08242 -12.99869 -12.82553 -12.66458 -12.49232 -12.23683 -12.12895 -11.82428 -11.65732 -11.45742 -11.18053 -10.99779 -10.93848 -10.86245 -10.68566 -10.54835 -10.18955 -10.10013 -10.04092 -9.96913 -9.76716 -9.64668 -9.43670 -9.18223 -8.67568 -8.54749 -6.88135 -5.66914 -3.10168 1.26263 1.98657 2.86593 2.91559 3.37482 3.41451 3.43444 3.44207 3.98498 4.24622 4.45130 4.57807 4.68526 4.85301 4.89404 4.99776 5.08168 5.13972 5.16229 5.19063 5.24426 5.29986 5.33000 5.41870 5.49353 5.50347 5.55708 5.63516 5.71123 5.80483 5.82053 5.85232 5.89462 5.98581 6.05523 6.07916 6.13139 6.26121 6.33499 6.40231 6.52340 6.58687 6.76337 6.77890 6.97723 7.12090 7.52092 7.61996 7.80227 7.86940 8.09695 8.34475 8.50075 9.19237 9.80195 10.44299 11.35486 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013945 B = 0.002597 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.405740 B =10777.830919 C =12031.123610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.023 3.977 3 N -0.370 5.370 4 O 0.094 5.906 5 C -0.028 4.028 6 C -0.077 4.077 7 C -0.198 4.198 8 C -0.023 4.023 9 C -0.137 4.137 10 C 0.513 3.487 11 O -0.539 6.539 12 N -0.705 5.705 13 C 0.159 3.841 14 C -0.109 4.109 15 C -0.124 4.124 16 C -0.130 4.130 17 C 0.162 3.838 18 H 0.046 0.954 19 N -0.595 5.595 20 C -0.221 4.221 21 H 0.076 0.924 22 C -0.010 4.010 23 N -0.921 5.921 24 Si 0.913 3.087 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.286 1.286 28 C 0.153 3.847 29 C -0.141 4.141 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.399 0.601 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.073 0.927 47 H 0.252 0.748 48 H 0.008 0.992 49 H 0.107 0.893 50 H 0.068 0.932 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.043 14.992 -8.423 18.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.136 4.136 3 N -0.077 5.077 4 O 0.030 5.970 5 C -0.091 4.091 6 C -0.134 4.134 7 C -0.202 4.202 8 C -0.061 4.061 9 C -0.177 4.177 10 C 0.299 3.701 11 O -0.417 6.417 12 N -0.355 5.355 13 C 0.073 3.927 14 C -0.148 4.148 15 C -0.163 4.163 16 C -0.170 4.170 17 C 0.054 3.946 18 H 0.063 0.937 19 N -0.319 5.319 20 C -0.350 4.350 21 H 0.094 0.906 22 C -0.205 4.205 23 N -0.569 5.569 24 Si 0.743 3.257 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.213 1.213 28 C 0.028 3.972 29 C -0.181 4.181 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.233 0.767 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.092 0.908 47 H 0.063 0.937 48 H 0.026 0.974 49 H 0.125 0.875 50 H 0.086 0.914 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.146 15.753 -9.080 19.194 hybrid contribution 0.260 -0.903 1.340 1.637 sum -5.885 14.850 -7.741 17.751 Atomic orbital electron populations 1.20178 0.86028 1.03784 1.03441 1.23469 0.98908 0.88554 1.02673 1.73833 0.89336 1.24024 1.20480 1.84791 1.21606 1.22657 1.67976 1.24326 0.98378 0.83664 1.02747 1.20391 0.89935 0.98819 1.04274 1.21016 0.91548 0.97631 1.10033 1.19583 1.03590 0.87173 0.95770 1.21643 1.03826 0.93499 0.98726 1.20445 0.77064 0.88609 0.83983 1.90686 1.50883 1.68775 1.31310 1.45926 1.69869 1.11450 1.08249 1.21645 0.94384 0.79632 0.97033 1.22258 0.94194 1.00366 0.98027 1.22351 0.97607 0.99131 0.97164 1.23063 0.95785 0.99772 0.98373 1.21925 0.88427 0.92644 0.91597 0.93663 1.44494 1.13799 1.57771 1.15819 1.18987 1.00247 1.23095 0.92643 0.90599 1.24778 0.96711 1.00918 0.98108 1.69792 1.09406 1.47508 1.30168 0.86183 0.77390 0.79810 0.82271 1.21175 1.21628 1.21289 1.21963 0.90801 1.01850 0.82548 1.23325 0.97847 0.97733 0.99175 0.90129 0.90651 0.89849 0.89290 0.89754 0.88702 0.89596 0.89713 0.89124 0.88932 0.76740 0.92442 0.91235 0.92411 0.92275 0.92427 0.90799 0.93702 0.97361 0.87545 0.91353 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.39 36.00 0.37 -0.24 16 2 C 0.02 0.25 7.33 -82.10 -0.60 -0.35 16 3 N -0.37 -4.61 12.07 33.42 0.40 -4.21 16 4 O 0.09 1.09 11.20 17.16 0.19 1.28 16 5 C -0.03 -0.27 7.49 -35.31 -0.26 -0.54 16 6 C -0.08 -0.51 10.24 36.00 0.37 -0.14 16 7 C -0.20 -2.02 5.58 -104.42 -0.58 -2.60 16 8 C -0.02 -0.23 4.76 -27.89 -0.13 -0.36 16 9 C -0.14 -1.37 5.68 -27.89 -0.16 -1.53 16 10 C 0.51 7.07 7.03 -10.99 -0.08 6.99 16 11 O -0.54 -9.05 13.80 5.55 0.08 -8.97 16 12 N -0.71 -10.25 5.23 -45.37 -0.24 -10.49 16 13 C 0.16 2.73 0.75 -129.39 -0.10 2.63 16 14 C -0.11 -1.70 5.30 -25.79 -0.14 -1.84 16 15 C -0.12 -1.79 6.84 -25.16 -0.17 -1.97 16 16 C -0.13 -2.28 6.29 -24.40 -0.15 -2.43 16 17 C 0.16 3.13 3.69 -65.14 -0.24 2.89 16 18 H 0.05 0.86 7.97 -51.93 -0.41 0.44 16 19 N -0.59 -14.26 3.06 -160.62 -0.49 -14.75 16 20 C -0.22 -5.86 10.04 -15.06 -0.15 -6.01 16 21 H 0.08 1.94 7.83 -52.48 -0.41 1.53 16 22 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 23 N -0.92 -26.13 10.07 55.49 0.56 -25.57 16 24 Si 0.91 21.51 29.55 -169.99 -5.02 16.49 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 28 C 0.15 3.63 5.90 -2.58 -0.02 3.62 16 29 C -0.14 -2.80 5.70 -24.73 -0.14 -2.94 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.58 7.65 -51.93 -0.40 0.18 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.62 8.05 -51.93 -0.42 0.20 16 36 H 0.09 0.89 8.04 -51.93 -0.42 0.48 16 37 H 0.08 0.87 7.61 -51.93 -0.40 0.47 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.40 5.12 8.50 -40.82 -0.35 4.78 16 41 H 0.06 0.86 7.61 -51.93 -0.39 0.47 16 42 H 0.07 1.13 7.38 -51.93 -0.38 0.75 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.07 1.45 8.11 -51.93 -0.42 1.03 16 47 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 49 H 0.11 2.89 5.83 -51.93 -0.30 2.59 16 50 H 0.07 1.36 6.53 -51.93 -0.34 1.03 16 51 H 0.07 1.33 7.63 -51.93 -0.40 0.94 16 LS Contribution 403.27 15.07 6.08 6.08 Total: -1.00 -31.51 403.27 -9.12 -40.63 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -8.40 Total: 4.69 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -2.28 Total: -5.18 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.23 Total: -55.02 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.27 Total: -7.69 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.51 -9.12 -40.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284069086.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.398 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds