Wall clock time and date at job start Wed Apr 1 2020 04:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30173 * 126.80374 * 2 1 4 4 O 1.20920 * 111.60604 * 180.24997 * 3 2 1 5 5 C 1.34047 * 111.56741 * 359.73960 * 4 3 2 6 6 C 1.50698 * 126.77733 * 179.97438 * 5 4 3 7 7 C 1.35445 * 106.44471 * 0.02562 * 5 4 3 8 8 C 1.50698 * 128.00915 * 179.97438 * 7 5 4 9 9 C 1.52995 * 109.47231 * 89.99664 * 8 7 5 10 10 C 1.50700 * 109.47262 * 180.02562 * 9 8 7 11 11 O 1.21283 * 119.99812 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00406 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00524 * 179.97438 * 12 10 9 14 14 C 1.53578 * 112.24159 * 297.65020 * 13 12 10 15 15 C 1.54231 * 106.67270 * 238.23484 * 14 13 12 16 16 C 1.54754 * 104.15874 * 335.06365 * 15 14 13 17 17 C 1.55118 * 112.65491 * 176.69442 * 13 12 10 18 18 H 1.08996 * 111.79783 * 23.26486 * 17 13 12 19 19 N 1.46986 * 107.08981 * 260.47239 * 17 13 12 20 20 C 1.36929 * 125.57872 * 181.83943 * 19 17 13 21 21 H 1.08004 * 120.00341 * 359.97438 * 20 19 17 22 22 C 1.38815 * 120.00031 * 179.71466 * 20 19 17 23 23 N 1.31617 * 119.99916 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99958 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47093 * 60.00562 * 24 22 20 26 26 H 1.48495 * 109.47002 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47239 * 300.00281 * 24 22 20 28 28 C 1.47366 * 108.83964 * 1.57629 * 19 17 13 29 29 C 1.54872 * 104.82493 * 335.58156 * 28 19 17 30 30 H 1.08995 * 109.47693 * 270.16988 * 1 2 3 31 31 H 1.09000 * 109.47228 * 30.17422 * 1 2 3 32 32 H 1.09006 * 109.47486 * 150.17021 * 1 2 3 33 33 H 1.09003 * 109.47276 * 270.00647 * 6 5 4 34 34 H 1.09005 * 109.47043 * 30.00389 * 6 5 4 35 35 H 1.08992 * 109.47061 * 150.00488 * 6 5 4 36 36 H 1.09004 * 109.46621 * 329.99634 * 8 7 5 37 37 H 1.09000 * 109.47397 * 210.00443 * 8 7 5 38 38 H 1.08996 * 109.47581 * 60.00232 * 9 8 7 39 39 H 1.09006 * 109.46992 * 300.00294 * 9 8 7 40 40 H 0.97001 * 119.99803 * 359.97438 * 12 10 9 41 41 H 1.09001 * 110.01961 * 357.54158 * 14 13 12 42 42 H 1.09000 * 110.02058 * 118.88698 * 14 13 12 43 43 H 1.09005 * 110.48692 * 93.72857 * 15 14 13 44 44 H 1.08994 * 110.49240 * 216.25739 * 15 14 13 45 45 H 1.08997 * 110.66770 * 156.23473 * 16 15 14 46 46 H 1.09000 * 110.66767 * 279.20767 * 16 15 14 47 47 H 0.97000 * 120.00284 * 179.97438 * 23 22 20 48 48 H 1.08996 * 110.36704 * 94.41397 * 28 19 17 49 49 H 1.08996 * 110.36949 * 216.74129 * 28 19 17 50 50 H 1.08995 * 110.97045 * 155.18891 * 29 28 19 51 51 H 1.08997 * 110.96312 * 278.94924 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0049 5 6 3.6024 -0.6069 -0.0032 6 6 4.9021 -1.3696 -0.0085 7 6 2.3539 -1.1321 0.0030 8 6 1.9590 -2.5864 0.0066 9 6 1.8318 -3.0767 1.4503 10 6 1.4374 -4.5312 1.4539 11 8 1.2737 -5.1177 0.4050 12 7 1.2656 -5.1799 2.6227 13 6 0.8817 -6.5937 2.6262 14 6 -0.4885 -6.8257 1.9725 15 6 -1.3777 -7.5011 3.0364 16 6 -0.3718 -8.1993 3.9827 17 6 0.8107 -7.1899 4.0565 18 1 0.6533 -6.4178 4.8095 19 7 2.0639 -7.9244 4.2810 20 6 2.3830 -8.6288 5.4111 21 1 1.6845 -8.6758 6.2335 22 6 3.6021 -9.2870 5.4976 23 7 4.4515 -9.2336 4.4935 24 14 4.0371 -10.2485 7.0389 25 1 3.0338 -11.3224 7.2521 26 1 5.3842 -10.8532 6.8813 27 1 4.0395 -9.3338 8.2088 28 6 2.9180 -7.7840 3.0884 29 6 1.9342 -7.4912 1.9287 30 1 -0.3634 0.0030 1.0276 31 1 -0.3634 0.8884 -0.5165 32 1 -0.3634 -0.8915 -0.5112 33 1 5.2103 -1.5553 -1.0375 34 1 5.6685 -0.7850 0.5004 35 1 4.7676 -2.3201 0.5076 36 1 2.7204 -3.1709 -0.5099 37 1 1.0027 -2.7045 -0.5029 38 1 1.0704 -2.4922 1.9668 39 1 2.7882 -2.9586 1.9597 40 1 1.3961 -4.7107 3.4615 41 1 -0.9246 -5.8730 1.6719 42 1 -0.3827 -7.4775 1.1053 43 1 -1.9572 -6.7542 3.5793 44 1 -2.0392 -8.2326 2.5723 45 1 -0.8113 -8.3487 4.9689 46 1 -0.0430 -9.1493 3.5614 47 1 5.3035 -9.6932 4.5541 48 1 3.6128 -6.9538 3.2150 49 1 3.4618 -8.7096 2.9000 50 1 2.4317 -6.9538 1.1214 51 1 1.4800 -8.4113 1.5609 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284069086.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:00 Heat of formation + Delta-G solvation = 16.848152 kcal Electronic energy + Delta-G solvation = -31456.553394 eV Core-core repulsion = 27358.437204 eV Total energy + Delta-G solvation = -4098.116189 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.89733 -41.54296 -39.60043 -36.82964 -36.00441 -34.72334 -34.64955 -33.33923 -32.69538 -31.32208 -29.59002 -28.73338 -28.38246 -27.59875 -25.84092 -25.65906 -22.84100 -22.15322 -21.51297 -21.04852 -20.74460 -20.14067 -18.86859 -18.69273 -18.14228 -17.71195 -17.09220 -16.81120 -16.58331 -15.83495 -15.58105 -15.28254 -15.13030 -14.88402 -14.58324 -14.41560 -14.28009 -13.95719 -13.94236 -13.86141 -13.63616 -13.51743 -13.37095 -13.23132 -13.08440 -12.93918 -12.87805 -12.74207 -12.62678 -12.25828 -12.23842 -12.05630 -11.86801 -11.71272 -11.67134 -11.53634 -11.43642 -11.21521 -10.84727 -10.69392 -10.61652 -10.03478 -9.86141 -8.83949 -7.71846 -5.16305 0.49383 1.20720 1.48968 1.51068 1.57253 1.77272 2.17020 2.32379 2.52957 3.25457 3.37336 3.41891 3.55043 3.67564 3.77480 3.90369 3.99402 4.01037 4.07211 4.30034 4.34517 4.39816 4.42518 4.46222 4.50813 4.61421 4.64107 4.67463 4.68658 4.71307 4.73070 4.83543 4.84444 4.93735 4.95793 5.01648 5.07681 5.11031 5.12139 5.17959 5.21379 5.26316 5.34919 5.37486 5.50199 5.54883 5.67328 5.76906 5.88087 6.33829 6.69658 7.14531 7.31397 7.38955 7.83135 8.46904 9.29044 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013945 B = 0.002597 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.405740 B =10777.830919 C =12031.123610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.019 3.981 3 N -0.401 5.401 4 O 0.079 5.921 5 C -0.024 4.024 6 C -0.078 4.078 7 C -0.208 4.208 8 C -0.014 4.014 9 C -0.126 4.126 10 C 0.514 3.486 11 O -0.569 6.569 12 N -0.705 5.705 13 C 0.170 3.830 14 C -0.103 4.103 15 C -0.110 4.110 16 C -0.126 4.126 17 C 0.153 3.847 18 H 0.057 0.943 19 N -0.611 5.611 20 C -0.225 4.225 21 H 0.083 0.917 22 C -0.068 4.068 23 N -0.950 5.950 24 Si 0.975 3.025 25 H -0.279 1.279 26 H -0.299 1.299 27 H -0.278 1.278 28 C 0.163 3.837 29 C -0.129 4.129 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.113 0.887 39 H 0.104 0.896 40 H 0.408 0.592 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.046 0.954 47 H 0.244 0.756 48 H -0.015 1.015 49 H 0.068 0.932 50 H 0.065 0.935 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.911 16.042 -7.855 19.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.139 4.139 3 N -0.110 5.110 4 O 0.018 5.982 5 C -0.087 4.087 6 C -0.135 4.135 7 C -0.212 4.212 8 C -0.052 4.052 9 C -0.165 4.165 10 C 0.302 3.698 11 O -0.448 6.448 12 N -0.355 5.355 13 C 0.083 3.917 14 C -0.142 4.142 15 C -0.148 4.148 16 C -0.166 4.166 17 C 0.047 3.953 18 H 0.075 0.925 19 N -0.335 5.335 20 C -0.354 4.354 21 H 0.101 0.899 22 C -0.260 4.260 23 N -0.600 5.600 24 Si 0.804 3.196 25 H -0.205 1.205 26 H -0.225 1.225 27 H -0.204 1.204 28 C 0.038 3.962 29 C -0.168 4.168 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.131 0.869 39 H 0.122 0.878 40 H 0.244 0.756 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.065 0.935 47 H 0.054 0.946 48 H 0.003 0.997 49 H 0.086 0.914 50 H 0.084 0.916 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.037 16.835 -8.499 20.499 hybrid contribution 0.853 -1.224 1.137 1.876 sum -7.184 15.610 -7.362 18.695 Atomic orbital electron populations 1.20311 0.84264 1.04493 1.04459 1.23968 1.00173 0.88346 1.01440 1.73830 0.89813 1.25087 1.22291 1.84758 1.21502 1.23521 1.68447 1.24868 0.99490 0.83190 1.01192 1.20551 0.88940 0.98661 1.05351 1.21045 0.91691 0.97512 1.10974 1.19469 1.03309 0.86861 0.95590 1.21611 1.04987 0.90722 0.99213 1.21042 0.75914 0.89830 0.83030 1.90679 1.52088 1.69783 1.32287 1.45897 1.70068 1.10326 1.09256 1.21422 0.94432 0.80628 0.95209 1.22188 0.93173 1.00935 0.97902 1.22292 0.96829 0.99636 0.96033 1.22933 0.95917 0.98293 0.99498 1.22189 0.87010 0.93062 0.93082 0.92504 1.44683 1.15485 1.58139 1.15219 1.19355 1.00141 1.22468 0.93449 0.89879 1.25561 0.97071 1.02539 1.00868 1.70053 1.09441 1.48657 1.31892 0.85198 0.76550 0.78602 0.79258 1.20480 1.22519 1.20436 1.21616 0.91276 0.98974 0.84349 1.23117 0.97765 0.98283 0.97635 0.88850 0.90346 0.88746 0.87995 0.88431 0.88361 0.90259 0.89842 0.86882 0.87815 0.75588 0.91182 0.92159 0.89978 0.90562 0.91775 0.93487 0.94614 0.99743 0.91358 0.91617 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 10.39 71.23 0.74 -0.34 16 2 C 0.02 0.39 7.33 43.58 0.32 0.71 16 3 N -0.40 -9.72 12.07 -49.56 -0.60 -10.32 16 4 O 0.08 1.78 11.20 71.57 0.80 2.58 16 5 C -0.02 -0.44 7.49 25.04 0.19 -0.25 16 6 C -0.08 -0.92 10.24 71.24 0.73 -0.19 16 7 C -0.21 -3.91 5.58 -19.74 -0.11 -4.03 16 8 C -0.01 -0.25 4.76 29.85 0.14 -0.11 16 9 C -0.13 -2.19 5.68 29.85 0.17 -2.02 16 10 C 0.51 13.14 7.03 87.66 0.62 13.76 16 11 O -0.57 -18.27 13.80 -3.04 -0.04 -18.31 16 12 N -0.70 -19.12 5.23 -415.84 -2.17 -21.29 16 13 C 0.17 5.60 0.75 5.18 0.00 5.60 16 14 C -0.10 -2.94 5.30 31.21 0.17 -2.78 16 15 C -0.11 -2.80 6.84 31.61 0.22 -2.59 16 16 C -0.13 -4.22 6.29 32.10 0.20 -4.02 16 17 C 0.15 5.71 3.69 46.54 0.17 5.88 16 18 H 0.06 2.02 7.97 -2.39 -0.02 2.00 16 19 N -0.61 -29.55 3.06 -662.07 -2.03 -31.58 16 20 C -0.23 -11.97 10.04 84.04 0.84 -11.12 16 21 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 22 C -0.07 -3.76 5.49 84.86 0.47 -3.30 16 23 N -0.95 -55.87 10.07 21.65 0.22 -55.65 16 24 Si 0.97 44.69 29.55 68.60 2.03 46.71 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 26 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 27 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 28 C 0.16 8.00 5.90 86.85 0.51 8.52 16 29 C -0.13 -5.15 5.70 31.89 0.18 -4.96 16 30 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.09 1.09 7.65 -2.38 -0.02 1.07 16 33 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.10 1.11 8.05 -2.39 -0.02 1.09 16 36 H 0.08 1.54 8.04 -2.38 -0.02 1.52 16 37 H 0.08 1.54 7.61 -2.39 -0.02 1.52 16 38 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 40 H 0.41 9.54 8.50 -92.71 -0.79 8.75 16 41 H 0.07 1.86 7.61 -2.39 -0.02 1.84 16 42 H 0.06 1.85 7.38 -2.39 -0.02 1.83 16 43 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 44 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.05 1.82 8.11 -2.39 -0.02 1.80 16 47 H 0.24 14.11 8.31 -92.71 -0.77 13.34 16 48 H -0.02 -0.81 8.14 -2.39 -0.02 -0.83 16 49 H 0.07 3.91 5.83 -2.39 -0.01 3.89 16 50 H 0.07 2.65 6.53 -2.39 -0.02 2.64 16 51 H 0.06 2.46 7.63 -2.39 -0.02 2.45 16 Total: -1.00 -69.90 403.27 3.91 -65.99 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: 0.15 Total: 23.11 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 5.56 Total: -1.24 kcal Atomic # 7 Polarization: -114.26 SS G_CDS: -4.58 Total: -118.85 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: 0.76 Total: -15.73 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -69.90 3.91 -65.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284069086.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.835 kcal (2) G-P(sol) polarization free energy of solvation -69.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds