Wall clock time and date at job start Wed Apr 1 2020 04:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30181 * 126.80966 * 2 1 4 4 O 1.20919 * 111.60639 * 180.25220 * 3 2 1 5 5 C 1.34046 * 111.56847 * 359.74782 * 4 3 2 6 6 C 1.50696 * 126.77570 * 179.97438 * 5 4 3 7 7 C 1.35453 * 106.44714 * 359.97438 * 5 4 3 8 8 C 1.50697 * 128.00658 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.46754 * 90.00775 * 8 7 5 10 10 O 1.21284 * 120.00136 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00273 * 179.97438 * 9 8 7 12 12 C 1.46495 * 120.00598 * 179.97438 * 11 9 8 13 13 C 1.53002 * 115.55207 * 179.91192 * 12 11 9 14 14 C 1.53047 * 109.45721 * 85.65572 * 13 12 11 15 15 C 1.53188 * 109.31100 * 178.61709 * 14 13 12 16 16 N 1.46933 * 108.77804 * 54.63012 * 15 14 13 17 17 C 1.36937 * 120.62716 * 126.36977 * 16 15 14 18 18 H 1.07997 * 119.99181 * 207.69395 * 17 16 15 19 19 C 1.38810 * 120.00013 * 27.70579 * 17 16 15 20 20 N 1.31618 * 120.00374 * 17.34589 * 19 17 16 21 21 Si 1.86799 * 119.99536 * 197.34946 * 19 17 16 22 22 H 1.48503 * 109.47216 * 89.99508 * 21 19 17 23 23 H 1.48509 * 109.46962 * 209.99542 * 21 19 17 24 24 H 1.48497 * 109.47268 * 329.99553 * 21 19 17 25 25 C 1.46926 * 118.73777 * 306.39060 * 16 15 14 26 26 C 1.53035 * 109.45866 * 325.58745 * 13 12 11 27 27 C 1.53004 * 117.49751 * 34.20606 * 12 11 9 28 28 C 1.53003 * 117.49806 * 325.58429 * 12 11 9 29 29 H 1.09001 * 109.46783 * 270.16716 * 1 2 3 30 30 H 1.09002 * 109.46374 * 30.16268 * 1 2 3 31 31 H 1.08994 * 109.47242 * 150.16489 * 1 2 3 32 32 H 1.09001 * 109.47153 * 269.99847 * 6 5 4 33 33 H 1.09003 * 109.47229 * 30.00028 * 6 5 4 34 34 H 1.08994 * 109.47005 * 149.99877 * 6 5 4 35 35 H 1.08998 * 109.47190 * 210.00108 * 8 7 5 36 36 H 1.08995 * 109.47045 * 330.00359 * 8 7 5 37 37 H 0.97000 * 119.99520 * 359.97438 * 11 9 8 38 38 H 1.08995 * 109.45661 * 205.61026 * 13 12 11 39 39 H 1.09003 * 109.49443 * 298.56632 * 14 13 12 40 40 H 1.08994 * 109.49660 * 58.66206 * 14 13 12 41 41 H 1.09004 * 109.58493 * 294.84537 * 15 14 13 42 42 H 1.08993 * 109.58680 * 174.42076 * 15 14 13 43 43 H 0.96995 * 119.99842 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.58898 * 293.82725 * 25 16 15 45 45 H 1.08992 * 109.58487 * 173.39388 * 25 16 15 46 46 H 1.09000 * 109.49873 * 301.32939 * 26 13 12 47 47 H 1.08995 * 109.50247 * 61.40092 * 26 13 12 48 48 H 1.09001 * 117.49574 * 359.97438 * 27 12 11 49 49 H 1.08995 * 117.49933 * 145.02270 * 27 12 11 50 50 H 1.08997 * 117.50188 * 214.97803 * 28 12 11 51 51 H 1.09001 * 117.49579 * 359.97435 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2870 1.0423 0.0000 4 8 3.4538 0.7252 -0.0049 5 6 3.6025 -0.6070 -0.0035 6 6 4.9021 -1.3698 -0.0089 7 6 2.3539 -1.1322 0.0038 8 6 1.9590 -2.5865 0.0077 9 6 1.8347 -3.0693 1.4298 10 8 2.0465 -2.3077 2.3495 11 7 1.4882 -4.3476 1.6796 12 6 1.3679 -4.8172 3.0620 13 6 0.9673 -6.2845 3.2281 14 6 2.2180 -7.1645 3.1665 15 6 1.8171 -8.6293 3.3676 16 7 0.7853 -8.9770 2.3810 17 6 0.9436 -10.0601 1.5581 18 1 0.4699 -10.0746 0.5877 19 6 1.7128 -11.1392 1.9713 20 7 2.0045 -11.2897 3.2459 21 14 2.3338 -12.3776 0.7184 22 1 3.6604 -11.9449 0.2102 23 1 2.4605 -13.7106 1.3608 24 1 1.3743 -12.4620 -0.4118 25 6 -0.4193 -8.1404 2.2939 26 6 0.0066 -6.6810 2.1047 27 6 0.8537 -3.8218 4.1041 28 6 2.3293 -4.2261 4.0951 29 1 -0.3633 0.0030 1.0277 30 1 -0.3632 0.8886 -0.5164 31 1 -0.3633 -0.8914 -0.5112 32 1 5.2102 -1.5555 -1.0378 33 1 5.6686 -0.7853 0.5001 34 1 4.7676 -2.3204 0.5072 35 1 1.0022 -2.7045 -0.5010 36 1 2.7199 -3.1710 -0.5094 37 1 1.3185 -4.9567 0.9440 38 1 0.4755 -6.4198 4.1913 39 1 2.6968 -7.0486 2.1942 40 1 2.9119 -6.8660 3.9522 41 1 1.4208 -8.7648 4.3739 42 1 2.6881 -9.2692 3.2264 43 1 2.5423 -12.0436 3.5346 44 1 -0.9979 -8.2359 3.2127 45 1 -1.0238 -8.4576 1.4443 46 1 -0.8733 -6.0384 2.1349 47 1 0.5061 -6.5691 1.1424 48 1 0.6053 -2.8175 3.7610 49 1 0.2298 -4.2122 4.9081 50 1 2.6762 -4.8824 4.8933 51 1 3.0516 -3.4882 3.7460 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284854103.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:55 Heat of formation + Delta-G solvation = 64.978206 kcal Electronic energy + Delta-G solvation = -31484.739180 eV Core-core repulsion = 27388.710067 eV Total energy + Delta-G solvation = -4096.029114 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.07284 -40.51841 -38.16300 -36.21834 -35.28764 -33.86308 -33.10961 -32.81122 -30.39070 -30.05049 -29.70575 -28.84772 -27.36441 -25.59531 -23.17706 -22.66662 -22.38008 -21.65529 -20.83875 -20.21826 -19.86441 -18.88378 -17.98738 -17.37329 -17.06528 -16.78337 -15.63452 -15.47575 -14.90655 -14.57918 -14.37904 -14.07198 -13.87132 -13.70046 -13.65922 -13.56450 -13.47382 -13.31221 -13.20337 -12.97751 -12.83917 -12.78324 -12.55500 -12.33104 -12.29721 -11.52570 -11.33724 -11.17320 -11.10362 -10.94627 -10.77228 -10.71751 -10.42180 -10.29026 -10.14007 -10.05876 -9.97110 -9.74451 -9.58302 -9.41287 -9.23640 -8.54227 -8.43487 -6.71800 -5.82665 -3.25115 1.27852 1.98278 2.49348 2.89771 3.15707 3.34117 3.41287 3.42444 3.96528 4.09390 4.22857 4.45730 4.46400 4.57316 4.68741 4.82497 4.96943 5.07505 5.09427 5.12008 5.19587 5.21653 5.27619 5.31456 5.37772 5.41299 5.48139 5.50888 5.56199 5.67423 5.71165 5.73368 5.88996 5.93534 5.94916 6.06720 6.15682 6.26555 6.42034 6.46346 6.52335 6.61301 6.70310 6.71300 6.78792 6.89948 7.33677 7.50123 7.62637 7.75562 8.12209 8.17704 8.41114 9.17502 9.81089 10.37575 11.25675 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016277 B = 0.002443 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.833609 B =11456.263687 C =11945.209874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.034 3.966 3 N -0.370 5.370 4 O 0.095 5.905 5 C -0.016 4.016 6 C -0.075 4.075 7 C -0.182 4.182 8 C -0.064 4.064 9 C 0.511 3.489 10 O -0.529 6.529 11 N -0.689 5.689 12 C 0.110 3.890 13 C -0.042 4.042 14 C -0.131 4.131 15 C 0.170 3.830 16 N -0.592 5.592 17 C -0.253 4.253 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.902 5.902 21 Si 0.901 3.099 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.145 3.855 26 C -0.125 4.125 27 C -0.180 4.180 28 C -0.175 4.175 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.407 0.593 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.017 0.983 42 H 0.088 0.912 43 H 0.254 0.746 44 H 0.018 0.982 45 H 0.054 0.946 46 H 0.052 0.948 47 H 0.055 0.945 48 H 0.103 0.897 49 H 0.090 0.910 50 H 0.092 0.908 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.803 18.889 -6.174 19.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.125 4.125 3 N -0.076 5.076 4 O 0.031 5.969 5 C -0.079 4.079 6 C -0.133 4.133 7 C -0.186 4.186 8 C -0.105 4.105 9 C 0.297 3.703 10 O -0.406 6.406 11 N -0.339 5.339 12 C 0.023 3.977 13 C -0.061 4.061 14 C -0.171 4.171 15 C 0.044 3.956 16 N -0.315 5.315 17 C -0.383 4.383 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.731 3.269 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.205 1.205 25 C 0.019 3.981 26 C -0.165 4.165 27 C -0.218 4.218 28 C -0.213 4.213 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.244 0.756 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.035 0.965 42 H 0.106 0.894 43 H 0.064 0.936 44 H 0.036 0.964 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.121 0.879 49 H 0.108 0.892 50 H 0.111 0.889 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.828 20.591 -5.460 21.319 hybrid contribution 0.190 -1.733 -0.858 1.943 sum 1.018 18.858 -6.318 19.915 Atomic orbital electron populations 1.20162 0.86127 1.03482 1.03567 1.23342 0.98778 0.88396 1.01985 1.73810 0.89236 1.23871 1.20724 1.84781 1.21679 1.22391 1.68017 1.24179 0.98085 0.83824 1.01854 1.20354 0.90166 0.98820 1.03914 1.20171 0.91853 0.95845 1.10743 1.19908 1.04636 0.90591 0.95343 1.20450 0.76940 0.81876 0.91019 1.90682 1.49127 1.55056 1.45714 1.45430 1.69378 1.11117 1.08020 1.20934 1.04657 0.93658 0.78500 1.20783 0.97444 0.88042 0.99849 1.22234 0.95426 0.98660 1.00733 1.20796 0.93824 0.89959 0.91016 1.44070 1.15630 1.29601 1.42192 1.19183 1.29576 0.93889 0.95612 0.91692 1.25035 1.02235 0.96876 0.95499 1.70031 1.40938 1.30701 1.12972 0.86307 0.79072 0.80642 0.80840 1.21465 1.21785 1.20458 1.20887 0.89873 0.88841 0.98548 1.22023 0.97776 0.99201 0.97485 1.23417 0.97185 1.00614 1.00614 1.23316 0.93888 1.03217 1.00926 0.90029 0.90571 0.90191 0.89307 0.89666 0.89117 0.87514 0.87488 0.75644 0.90394 0.92779 0.93100 0.96496 0.89416 0.93614 0.96443 0.92769 0.92903 0.92669 0.87870 0.89180 0.88925 0.87842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.39 36.01 0.37 -0.29 16 2 C 0.03 0.40 7.33 -82.09 -0.60 -0.20 16 3 N -0.37 -4.92 12.07 33.43 0.40 -4.51 16 4 O 0.09 1.17 11.20 17.16 0.19 1.36 16 5 C -0.02 -0.16 7.49 -35.30 -0.26 -0.43 16 6 C -0.08 -0.51 10.24 36.00 0.37 -0.14 16 7 C -0.18 -1.94 4.81 -104.42 -0.50 -2.44 16 8 C -0.06 -0.55 5.95 -29.04 -0.17 -0.72 16 9 C 0.51 5.93 7.53 -10.99 -0.08 5.84 16 10 O -0.53 -7.86 11.51 5.55 0.06 -7.80 16 11 N -0.69 -7.97 5.39 -47.61 -0.26 -8.23 16 12 C 0.11 1.48 2.48 -131.82 -0.33 1.15 16 13 C -0.04 -0.64 2.28 -90.58 -0.21 -0.84 16 14 C -0.13 -2.30 5.22 -26.61 -0.14 -2.44 16 15 C 0.17 3.82 5.31 -3.71 -0.02 3.81 16 16 N -0.59 -13.94 2.99 -172.32 -0.52 -14.46 16 17 C -0.25 -6.63 9.58 -15.06 -0.14 -6.77 16 18 H 0.07 1.67 7.89 -52.49 -0.41 1.26 16 19 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 20 N -0.90 -25.48 11.19 55.49 0.62 -24.86 16 21 Si 0.90 21.00 29.59 -169.99 -5.03 15.97 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 C 0.15 2.80 6.52 -3.71 -0.02 2.78 16 26 C -0.13 -1.90 4.83 -26.61 -0.13 -2.03 16 27 C -0.18 -2.45 9.36 -26.73 -0.25 -2.70 16 28 C -0.18 -2.44 8.91 -26.73 -0.24 -2.68 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.54 7.65 -51.93 -0.40 0.14 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.63 8.05 -51.93 -0.42 0.21 16 35 H 0.11 0.69 7.65 -51.93 -0.40 0.30 16 36 H 0.11 0.68 8.08 -51.93 -0.42 0.26 16 37 H 0.41 4.16 6.66 -40.82 -0.27 3.88 16 38 H 0.08 1.23 7.90 -51.93 -0.41 0.82 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.84 7.24 -51.93 -0.38 0.46 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 2.25 6.04 -51.93 -0.31 1.94 16 43 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 46 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.05 0.80 6.50 -51.93 -0.34 0.46 16 48 H 0.10 1.53 6.36 -51.93 -0.33 1.20 16 49 H 0.09 1.15 8.05 -51.93 -0.42 0.73 16 50 H 0.09 1.25 7.60 -51.93 -0.39 0.86 16 51 H 0.10 1.56 6.39 -51.93 -0.33 1.23 16 LS Contribution 401.85 15.07 6.06 6.06 Total: -1.00 -31.99 401.85 -9.07 -41.06 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -8.16 Total: 3.56 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -2.44 Total: -8.14 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: 0.25 Total: -52.06 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: 0.26 Total: -6.44 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.99 -9.07 -41.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284854103.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.037 kcal (2) G-P(sol) polarization free energy of solvation -31.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds