Wall clock time and date at job start Wed Apr 1 2020 04:41:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 N 1.30181 * 126.80966 * 2 1
4 4 O 1.20919 * 111.60639 * 180.25220 * 3 2 1
5 5 C 1.34046 * 111.56847 * 359.74782 * 4 3 2
6 6 C 1.50696 * 126.77570 * 179.97438 * 5 4 3
7 7 C 1.35453 * 106.44714 * 359.97438 * 5 4 3
8 8 C 1.50697 * 128.00658 * 179.97438 * 7 5 4
9 9 C 1.50696 * 109.46754 * 90.00775 * 8 7 5
10 10 O 1.21284 * 120.00136 * 359.97438 * 9 8 7
11 11 N 1.34778 * 120.00273 * 179.97438 * 9 8 7
12 12 C 1.46495 * 120.00598 * 179.97438 * 11 9 8
13 13 C 1.53002 * 115.55207 * 179.91192 * 12 11 9
14 14 C 1.53047 * 109.45721 * 85.65572 * 13 12 11
15 15 C 1.53188 * 109.31100 * 178.61709 * 14 13 12
16 16 N 1.46933 * 108.77804 * 54.63012 * 15 14 13
17 17 C 1.36937 * 120.62716 * 126.36977 * 16 15 14
18 18 H 1.07997 * 119.99181 * 207.69395 * 17 16 15
19 19 C 1.38810 * 120.00013 * 27.70579 * 17 16 15
20 20 N 1.31618 * 120.00374 * 17.34589 * 19 17 16
21 21 Si 1.86799 * 119.99536 * 197.34946 * 19 17 16
22 22 H 1.48503 * 109.47216 * 89.99508 * 21 19 17
23 23 H 1.48509 * 109.46962 * 209.99542 * 21 19 17
24 24 H 1.48497 * 109.47268 * 329.99553 * 21 19 17
25 25 C 1.46926 * 118.73777 * 306.39060 * 16 15 14
26 26 C 1.53035 * 109.45866 * 325.58745 * 13 12 11
27 27 C 1.53004 * 117.49751 * 34.20606 * 12 11 9
28 28 C 1.53003 * 117.49806 * 325.58429 * 12 11 9
29 29 H 1.09001 * 109.46783 * 270.16716 * 1 2 3
30 30 H 1.09002 * 109.46374 * 30.16268 * 1 2 3
31 31 H 1.08994 * 109.47242 * 150.16489 * 1 2 3
32 32 H 1.09001 * 109.47153 * 269.99847 * 6 5 4
33 33 H 1.09003 * 109.47229 * 30.00028 * 6 5 4
34 34 H 1.08994 * 109.47005 * 149.99877 * 6 5 4
35 35 H 1.08998 * 109.47190 * 210.00108 * 8 7 5
36 36 H 1.08995 * 109.47045 * 330.00359 * 8 7 5
37 37 H 0.97000 * 119.99520 * 359.97438 * 11 9 8
38 38 H 1.08995 * 109.45661 * 205.61026 * 13 12 11
39 39 H 1.09003 * 109.49443 * 298.56632 * 14 13 12
40 40 H 1.08994 * 109.49660 * 58.66206 * 14 13 12
41 41 H 1.09004 * 109.58493 * 294.84537 * 15 14 13
42 42 H 1.08993 * 109.58680 * 174.42076 * 15 14 13
43 43 H 0.96995 * 119.99842 * 180.02562 * 20 19 17
44 44 H 1.08997 * 109.58898 * 293.82725 * 25 16 15
45 45 H 1.08992 * 109.58487 * 173.39388 * 25 16 15
46 46 H 1.09000 * 109.49873 * 301.32939 * 26 13 12
47 47 H 1.08995 * 109.50247 * 61.40092 * 26 13 12
48 48 H 1.09001 * 117.49574 * 359.97438 * 27 12 11
49 49 H 1.08995 * 117.49933 * 145.02270 * 27 12 11
50 50 H 1.08997 * 117.50188 * 214.97803 * 28 12 11
51 51 H 1.09001 * 117.49579 * 359.97435 * 28 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2870 1.0423 0.0000
4 8 3.4538 0.7252 -0.0049
5 6 3.6025 -0.6070 -0.0035
6 6 4.9021 -1.3698 -0.0089
7 6 2.3539 -1.1322 0.0038
8 6 1.9590 -2.5865 0.0077
9 6 1.8347 -3.0693 1.4298
10 8 2.0465 -2.3077 2.3495
11 7 1.4882 -4.3476 1.6796
12 6 1.3679 -4.8172 3.0620
13 6 0.9673 -6.2845 3.2281
14 6 2.2180 -7.1645 3.1665
15 6 1.8171 -8.6293 3.3676
16 7 0.7853 -8.9770 2.3810
17 6 0.9436 -10.0601 1.5581
18 1 0.4699 -10.0746 0.5877
19 6 1.7128 -11.1392 1.9713
20 7 2.0045 -11.2897 3.2459
21 14 2.3338 -12.3776 0.7184
22 1 3.6604 -11.9449 0.2102
23 1 2.4605 -13.7106 1.3608
24 1 1.3743 -12.4620 -0.4118
25 6 -0.4193 -8.1404 2.2939
26 6 0.0066 -6.6810 2.1047
27 6 0.8537 -3.8218 4.1041
28 6 2.3293 -4.2261 4.0951
29 1 -0.3633 0.0030 1.0277
30 1 -0.3632 0.8886 -0.5164
31 1 -0.3633 -0.8914 -0.5112
32 1 5.2102 -1.5555 -1.0378
33 1 5.6686 -0.7853 0.5001
34 1 4.7676 -2.3204 0.5072
35 1 1.0022 -2.7045 -0.5010
36 1 2.7199 -3.1710 -0.5094
37 1 1.3185 -4.9567 0.9440
38 1 0.4755 -6.4198 4.1913
39 1 2.6968 -7.0486 2.1942
40 1 2.9119 -6.8660 3.9522
41 1 1.4208 -8.7648 4.3739
42 1 2.6881 -9.2692 3.2264
43 1 2.5423 -12.0436 3.5346
44 1 -0.9979 -8.2359 3.2127
45 1 -1.0238 -8.4576 1.4443
46 1 -0.8733 -6.0384 2.1349
47 1 0.5061 -6.5691 1.1424
48 1 0.6053 -2.8175 3.7610
49 1 0.2298 -4.2122 4.9081
50 1 2.6762 -4.8824 4.8933
51 1 3.0516 -3.4882 3.7460
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001284854103.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:41:54
Heat of formation + Delta-G solvation = 46.731259 kcal
Electronic energy + Delta-G solvation = -31485.530427 eV
Core-core repulsion = 27388.710067 eV
Total energy + Delta-G solvation = -4096.820361 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-45.89433 -41.53826 -39.43483 -37.54306 -36.15888 -34.63850 -34.51313 -34.05735
-32.05956 -31.41396 -30.64738 -29.58815 -28.05354 -27.33584 -24.55663 -24.04913
-23.48541 -22.89475 -21.78283 -21.21982 -20.99815 -20.15685 -18.88007 -18.68258
-18.19194 -17.86988 -16.90091 -16.57251 -16.27610 -15.75335 -15.38004 -15.26223
-15.15630 -14.93900 -14.81054 -14.55185 -14.49816 -14.32399 -14.26118 -13.92943
-13.88203 -13.84271 -13.41986 -13.19178 -13.07016 -12.99433 -12.92683 -12.65603
-12.53231 -12.25661 -12.09652 -11.90988 -11.87010 -11.86757 -11.68297 -11.50736
-11.09695 -10.99063 -10.84907 -10.59841 -10.49163 -10.04219 -9.51429 -8.63725
-7.83058 -5.27708 0.49936 1.17434 1.49972 1.51321 1.59635 1.62426
2.14937 2.29288 2.54892 2.99681 3.23875 3.31165 3.53414 3.62659
3.68373 3.76714 3.80506 3.94536 4.05409 4.06789 4.30205 4.36074
4.40158 4.50162 4.51460 4.58978 4.61272 4.64931 4.67136 4.70729
4.76900 4.80055 4.82361 4.84657 4.88727 4.98077 5.08054 5.08597
5.12756 5.22483 5.27796 5.29915 5.30369 5.36939 5.42247 5.56702
5.67023 5.71908 5.82400 6.43700 6.62691 7.19722 7.30931 7.31486
7.92135 8.43059 9.23064
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.016277 B = 0.002443 C = 0.002343
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1719.833609 B =11456.263687 C =11945.209874
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 C 0.023 3.977
3 N -0.404 5.404
4 O 0.076 5.924
5 C -0.019 4.019
6 C -0.074 4.074
7 C -0.195 4.195
8 C -0.057 4.057
9 C 0.513 3.487
10 O -0.564 6.564
11 N -0.683 5.683
12 C 0.119 3.881
13 C -0.033 4.033
14 C -0.115 4.115
15 C 0.176 3.824
16 N -0.609 5.609
17 C -0.256 4.256
18 H 0.070 0.930
19 C -0.053 4.053
20 N -0.937 5.937
21 Si 0.964 3.036
22 H -0.285 1.285
23 H -0.300 1.300
24 H -0.267 1.267
25 C 0.139 3.861
26 C -0.112 4.112
27 C -0.174 4.174
28 C -0.179 4.179
29 H 0.076 0.924
30 H 0.081 0.919
31 H 0.103 0.897
32 H 0.113 0.887
33 H 0.091 0.909
34 H 0.092 0.908
35 H 0.134 0.866
36 H 0.134 0.866
37 H 0.416 0.584
38 H 0.073 0.927
39 H 0.055 0.945
40 H 0.060 0.940
41 H -0.009 1.009
42 H 0.051 0.949
43 H 0.248 0.752
44 H 0.009 0.991
45 H 0.057 0.943
46 H 0.080 0.920
47 H 0.068 0.932
48 H 0.093 0.907
49 H 0.099 0.901
50 H 0.094 0.906
51 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.379 19.436 -8.164 21.085
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.135 4.135
3 N -0.114 5.114
4 O 0.016 5.984
5 C -0.082 4.082
6 C -0.132 4.132
7 C -0.199 4.199
8 C -0.097 4.097
9 C 0.301 3.699
10 O -0.443 6.443
11 N -0.335 5.335
12 C 0.031 3.969
13 C -0.052 4.052
14 C -0.154 4.154
15 C 0.051 3.949
16 N -0.332 5.332
17 C -0.387 4.387
18 H 0.088 0.912
19 C -0.248 4.248
20 N -0.584 5.584
21 Si 0.792 3.208
22 H -0.212 1.212
23 H -0.227 1.227
24 H -0.192 1.192
25 C 0.014 3.986
26 C -0.151 4.151
27 C -0.212 4.212
28 C -0.217 4.217
29 H 0.095 0.905
30 H 0.099 0.901
31 H 0.122 0.878
32 H 0.132 0.868
33 H 0.109 0.891
34 H 0.111 0.889
35 H 0.151 0.849
36 H 0.152 0.848
37 H 0.255 0.745
38 H 0.091 0.909
39 H 0.074 0.926
40 H 0.078 0.922
41 H 0.009 0.991
42 H 0.070 0.930
43 H 0.057 0.943
44 H 0.027 0.973
45 H 0.076 0.924
46 H 0.099 0.901
47 H 0.087 0.913
48 H 0.111 0.889
49 H 0.117 0.883
50 H 0.112 0.888
51 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 0.397 21.156 -7.486 22.445
hybrid contribution 0.285 -1.892 -0.191 1.923
sum 0.682 19.264 -7.677 20.749
Atomic orbital electron populations
1.20279 0.84479 1.04964 1.03618 1.23916 1.00081 0.88560 1.00984
1.73795 0.89821 1.25177 1.22639 1.84733 1.21522 1.23586 1.68559
1.24874 0.99592 0.83264 1.00498 1.20526 0.88701 0.98326 1.05602
1.20473 0.91697 0.96690 1.11051 1.19987 1.06976 0.89320 0.93390
1.20944 0.75737 0.81264 0.91967 1.90683 1.50551 1.55877 1.47159
1.45360 1.69346 1.11467 1.07304 1.20612 1.04229 0.92344 0.79675
1.20614 0.96098 0.88657 0.99845 1.21984 0.96801 0.95538 1.01056
1.20582 0.92243 0.92505 0.89615 1.44335 1.17345 1.29693 1.41870
1.19543 1.28675 0.94371 0.96079 0.91207 1.25769 1.03152 0.98952
0.96961 1.70191 1.42120 1.31305 1.14761 0.85318 0.78625 0.77922
0.78901 1.21209 1.22749 1.19158 1.21072 0.88460 0.90807 0.98282
1.21872 0.98896 0.96344 0.97945 1.23367 0.96978 1.00043 1.00816
1.23266 0.93954 1.03152 1.01337 0.90530 0.90056 0.87818 0.86827
0.89051 0.88908 0.84858 0.84780 0.74539 0.90918 0.92642 0.92172
0.99069 0.93026 0.94309 0.97260 0.92428 0.90111 0.91311 0.88864
0.88312 0.88751 0.88923
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.20 10.39 71.24 0.74 -0.46 16
2 C 0.02 0.52 7.33 43.58 0.32 0.84 16
3 N -0.40 -10.72 12.07 -49.53 -0.60 -11.32 16
4 O 0.08 1.87 11.20 71.58 0.80 2.67 16
5 C -0.02 -0.36 7.49 25.04 0.19 -0.17 16
6 C -0.07 -0.85 10.24 71.23 0.73 -0.12 16
7 C -0.19 -3.75 4.81 -19.73 -0.10 -3.84 16
8 C -0.06 -0.76 5.95 29.10 0.17 -0.59 16
9 C 0.51 10.43 7.53 87.66 0.66 11.09 16
10 O -0.56 -15.82 11.51 -3.04 -0.04 -15.86 16
11 N -0.68 -13.50 5.39 -422.92 -2.28 -15.78 16
12 C 0.12 2.90 2.48 3.61 0.01 2.91 16
13 C -0.03 -0.92 2.28 -10.77 -0.02 -0.95 16
14 C -0.11 -3.89 5.22 30.67 0.16 -3.73 16
15 C 0.18 8.05 5.31 86.36 0.46 8.51 16
16 N -0.61 -28.46 2.99 -699.09 -2.09 -30.56 16
17 C -0.26 -13.34 9.58 84.03 0.81 -12.53 16
18 H 0.07 3.50 7.89 -2.91 -0.02 3.48 16
19 C -0.05 -2.87 4.91 84.86 0.42 -2.46 16
20 N -0.94 -54.33 11.19 21.65 0.24 -54.09 16
21 Si 0.96 43.29 29.59 68.60 2.03 45.32 16
22 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16
23 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16
24 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16
25 C 0.14 5.15 6.52 86.37 0.56 5.72 16
26 C -0.11 -3.02 4.83 30.67 0.15 -2.87 16
27 C -0.17 -4.39 9.36 30.60 0.29 -4.11 16
28 C -0.18 -4.70 8.91 30.60 0.27 -4.43 16
29 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16
30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16
31 H 0.10 1.08 7.65 -2.39 -0.02 1.07 16
32 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16
33 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16
34 H 0.09 1.05 8.05 -2.39 -0.02 1.03 16
35 H 0.13 1.11 7.65 -2.39 -0.02 1.09 16
36 H 0.13 1.11 8.08 -2.39 -0.02 1.09 16
37 H 0.42 6.71 6.66 -92.71 -0.62 6.10 16
38 H 0.07 2.16 7.90 -2.39 -0.02 2.14 16
39 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16
40 H 0.06 1.92 7.24 -2.39 -0.02 1.90 16
41 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16
42 H 0.05 2.72 6.04 -2.39 -0.01 2.71 16
43 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16
44 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16
45 H 0.06 2.07 7.93 -2.39 -0.02 2.05 16
46 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16
47 H 0.07 1.71 6.50 -2.39 -0.02 1.70 16
48 H 0.09 2.61 6.36 -2.39 -0.02 2.60 16
49 H 0.10 2.31 8.05 -2.39 -0.02 2.29 16
50 H 0.09 2.42 7.60 -2.39 -0.02 2.41 16
51 H 0.09 2.69 6.39 -2.39 -0.02 2.68 16
Total: -1.00 -71.49 401.85 4.21 -67.28
By element:
Atomic # 1 Polarization: 19.20 SS G_CDS: 0.33 Total: 19.53 kcal
Atomic # 6 Polarization: -13.01 SS G_CDS: 5.81 Total: -7.20 kcal
Atomic # 7 Polarization: -107.02 SS G_CDS: -4.73 Total: -111.74 kcal
Atomic # 8 Polarization: -13.95 SS G_CDS: 0.77 Total: -13.18 kcal
Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal
Total: -71.49 4.21 -67.28 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001284854103.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 114.011 kcal
(2) G-P(sol) polarization free energy of solvation -71.486 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.526 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.206 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.280 kcal
(6) G-S(sol) free energy of system = (1) + (5) 46.731 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds