Wall clock time and date at job start Wed Apr 1 2020 04:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30181 * 126.80966 * 2 1 4 4 O 1.20919 * 111.60639 * 180.25220 * 3 2 1 5 5 C 1.34046 * 111.56847 * 359.74782 * 4 3 2 6 6 C 1.50696 * 126.77570 * 179.97438 * 5 4 3 7 7 C 1.35453 * 106.44714 * 359.97438 * 5 4 3 8 8 C 1.50697 * 128.00658 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.46754 * 90.00775 * 8 7 5 10 10 O 1.21284 * 120.00136 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00273 * 179.97438 * 9 8 7 12 12 C 1.46495 * 120.00598 * 179.97438 * 11 9 8 13 13 C 1.53002 * 115.55207 * 179.91192 * 12 11 9 14 14 C 1.53047 * 109.45721 * 85.65572 * 13 12 11 15 15 C 1.53188 * 109.31100 * 178.61709 * 14 13 12 16 16 N 1.46933 * 108.77804 * 54.63012 * 15 14 13 17 17 C 1.36937 * 120.62716 * 126.36977 * 16 15 14 18 18 H 1.07997 * 119.99181 * 207.69395 * 17 16 15 19 19 C 1.38810 * 120.00013 * 27.70579 * 17 16 15 20 20 N 1.31618 * 120.00374 * 17.34589 * 19 17 16 21 21 Si 1.86799 * 119.99536 * 197.34946 * 19 17 16 22 22 H 1.48503 * 109.47216 * 89.99508 * 21 19 17 23 23 H 1.48509 * 109.46962 * 209.99542 * 21 19 17 24 24 H 1.48497 * 109.47268 * 329.99553 * 21 19 17 25 25 C 1.46926 * 118.73777 * 306.39060 * 16 15 14 26 26 C 1.53035 * 109.45866 * 325.58745 * 13 12 11 27 27 C 1.53004 * 117.49751 * 34.20606 * 12 11 9 28 28 C 1.53003 * 117.49806 * 325.58429 * 12 11 9 29 29 H 1.09001 * 109.46783 * 270.16716 * 1 2 3 30 30 H 1.09002 * 109.46374 * 30.16268 * 1 2 3 31 31 H 1.08994 * 109.47242 * 150.16489 * 1 2 3 32 32 H 1.09001 * 109.47153 * 269.99847 * 6 5 4 33 33 H 1.09003 * 109.47229 * 30.00028 * 6 5 4 34 34 H 1.08994 * 109.47005 * 149.99877 * 6 5 4 35 35 H 1.08998 * 109.47190 * 210.00108 * 8 7 5 36 36 H 1.08995 * 109.47045 * 330.00359 * 8 7 5 37 37 H 0.97000 * 119.99520 * 359.97438 * 11 9 8 38 38 H 1.08995 * 109.45661 * 205.61026 * 13 12 11 39 39 H 1.09003 * 109.49443 * 298.56632 * 14 13 12 40 40 H 1.08994 * 109.49660 * 58.66206 * 14 13 12 41 41 H 1.09004 * 109.58493 * 294.84537 * 15 14 13 42 42 H 1.08993 * 109.58680 * 174.42076 * 15 14 13 43 43 H 0.96995 * 119.99842 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.58898 * 293.82725 * 25 16 15 45 45 H 1.08992 * 109.58487 * 173.39388 * 25 16 15 46 46 H 1.09000 * 109.49873 * 301.32939 * 26 13 12 47 47 H 1.08995 * 109.50247 * 61.40092 * 26 13 12 48 48 H 1.09001 * 117.49574 * 359.97438 * 27 12 11 49 49 H 1.08995 * 117.49933 * 145.02270 * 27 12 11 50 50 H 1.08997 * 117.50188 * 214.97803 * 28 12 11 51 51 H 1.09001 * 117.49579 * 359.97435 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2870 1.0423 0.0000 4 8 3.4538 0.7252 -0.0049 5 6 3.6025 -0.6070 -0.0035 6 6 4.9021 -1.3698 -0.0089 7 6 2.3539 -1.1322 0.0038 8 6 1.9590 -2.5865 0.0077 9 6 1.8347 -3.0693 1.4298 10 8 2.0465 -2.3077 2.3495 11 7 1.4882 -4.3476 1.6796 12 6 1.3679 -4.8172 3.0620 13 6 0.9673 -6.2845 3.2281 14 6 2.2180 -7.1645 3.1665 15 6 1.8171 -8.6293 3.3676 16 7 0.7853 -8.9770 2.3810 17 6 0.9436 -10.0601 1.5581 18 1 0.4699 -10.0746 0.5877 19 6 1.7128 -11.1392 1.9713 20 7 2.0045 -11.2897 3.2459 21 14 2.3338 -12.3776 0.7184 22 1 3.6604 -11.9449 0.2102 23 1 2.4605 -13.7106 1.3608 24 1 1.3743 -12.4620 -0.4118 25 6 -0.4193 -8.1404 2.2939 26 6 0.0066 -6.6810 2.1047 27 6 0.8537 -3.8218 4.1041 28 6 2.3293 -4.2261 4.0951 29 1 -0.3633 0.0030 1.0277 30 1 -0.3632 0.8886 -0.5164 31 1 -0.3633 -0.8914 -0.5112 32 1 5.2102 -1.5555 -1.0378 33 1 5.6686 -0.7853 0.5001 34 1 4.7676 -2.3204 0.5072 35 1 1.0022 -2.7045 -0.5010 36 1 2.7199 -3.1710 -0.5094 37 1 1.3185 -4.9567 0.9440 38 1 0.4755 -6.4198 4.1913 39 1 2.6968 -7.0486 2.1942 40 1 2.9119 -6.8660 3.9522 41 1 1.4208 -8.7648 4.3739 42 1 2.6881 -9.2692 3.2264 43 1 2.5423 -12.0436 3.5346 44 1 -0.9979 -8.2359 3.2127 45 1 -1.0238 -8.4576 1.4443 46 1 -0.8733 -6.0384 2.1349 47 1 0.5061 -6.5691 1.1424 48 1 0.6053 -2.8175 3.7610 49 1 0.2298 -4.2122 4.9081 50 1 2.6762 -4.8824 4.8933 51 1 3.0516 -3.4882 3.7460 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284854103.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:54 Heat of formation + Delta-G solvation = 46.731259 kcal Electronic energy + Delta-G solvation = -31485.530427 eV Core-core repulsion = 27388.710067 eV Total energy + Delta-G solvation = -4096.820361 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.89433 -41.53826 -39.43483 -37.54306 -36.15888 -34.63850 -34.51313 -34.05735 -32.05956 -31.41396 -30.64738 -29.58815 -28.05354 -27.33584 -24.55663 -24.04913 -23.48541 -22.89475 -21.78283 -21.21982 -20.99815 -20.15685 -18.88007 -18.68258 -18.19194 -17.86988 -16.90091 -16.57251 -16.27610 -15.75335 -15.38004 -15.26223 -15.15630 -14.93900 -14.81054 -14.55185 -14.49816 -14.32399 -14.26118 -13.92943 -13.88203 -13.84271 -13.41986 -13.19178 -13.07016 -12.99433 -12.92683 -12.65603 -12.53231 -12.25661 -12.09652 -11.90988 -11.87010 -11.86757 -11.68297 -11.50736 -11.09695 -10.99063 -10.84907 -10.59841 -10.49163 -10.04219 -9.51429 -8.63725 -7.83058 -5.27708 0.49936 1.17434 1.49972 1.51321 1.59635 1.62426 2.14937 2.29288 2.54892 2.99681 3.23875 3.31165 3.53414 3.62659 3.68373 3.76714 3.80506 3.94536 4.05409 4.06789 4.30205 4.36074 4.40158 4.50162 4.51460 4.58978 4.61272 4.64931 4.67136 4.70729 4.76900 4.80055 4.82361 4.84657 4.88727 4.98077 5.08054 5.08597 5.12756 5.22483 5.27796 5.29915 5.30369 5.36939 5.42247 5.56702 5.67023 5.71908 5.82400 6.43700 6.62691 7.19722 7.30931 7.31486 7.92135 8.43059 9.23064 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016277 B = 0.002443 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.833609 B =11456.263687 C =11945.209874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.023 3.977 3 N -0.404 5.404 4 O 0.076 5.924 5 C -0.019 4.019 6 C -0.074 4.074 7 C -0.195 4.195 8 C -0.057 4.057 9 C 0.513 3.487 10 O -0.564 6.564 11 N -0.683 5.683 12 C 0.119 3.881 13 C -0.033 4.033 14 C -0.115 4.115 15 C 0.176 3.824 16 N -0.609 5.609 17 C -0.256 4.256 18 H 0.070 0.930 19 C -0.053 4.053 20 N -0.937 5.937 21 Si 0.964 3.036 22 H -0.285 1.285 23 H -0.300 1.300 24 H -0.267 1.267 25 C 0.139 3.861 26 C -0.112 4.112 27 C -0.174 4.174 28 C -0.179 4.179 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.416 0.584 38 H 0.073 0.927 39 H 0.055 0.945 40 H 0.060 0.940 41 H -0.009 1.009 42 H 0.051 0.949 43 H 0.248 0.752 44 H 0.009 0.991 45 H 0.057 0.943 46 H 0.080 0.920 47 H 0.068 0.932 48 H 0.093 0.907 49 H 0.099 0.901 50 H 0.094 0.906 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.379 19.436 -8.164 21.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.135 4.135 3 N -0.114 5.114 4 O 0.016 5.984 5 C -0.082 4.082 6 C -0.132 4.132 7 C -0.199 4.199 8 C -0.097 4.097 9 C 0.301 3.699 10 O -0.443 6.443 11 N -0.335 5.335 12 C 0.031 3.969 13 C -0.052 4.052 14 C -0.154 4.154 15 C 0.051 3.949 16 N -0.332 5.332 17 C -0.387 4.387 18 H 0.088 0.912 19 C -0.248 4.248 20 N -0.584 5.584 21 Si 0.792 3.208 22 H -0.212 1.212 23 H -0.227 1.227 24 H -0.192 1.192 25 C 0.014 3.986 26 C -0.151 4.151 27 C -0.212 4.212 28 C -0.217 4.217 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.122 0.878 32 H 0.132 0.868 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.255 0.745 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.009 0.991 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.027 0.973 45 H 0.076 0.924 46 H 0.099 0.901 47 H 0.087 0.913 48 H 0.111 0.889 49 H 0.117 0.883 50 H 0.112 0.888 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.397 21.156 -7.486 22.445 hybrid contribution 0.285 -1.892 -0.191 1.923 sum 0.682 19.264 -7.677 20.749 Atomic orbital electron populations 1.20279 0.84479 1.04964 1.03618 1.23916 1.00081 0.88560 1.00984 1.73795 0.89821 1.25177 1.22639 1.84733 1.21522 1.23586 1.68559 1.24874 0.99592 0.83264 1.00498 1.20526 0.88701 0.98326 1.05602 1.20473 0.91697 0.96690 1.11051 1.19987 1.06976 0.89320 0.93390 1.20944 0.75737 0.81264 0.91967 1.90683 1.50551 1.55877 1.47159 1.45360 1.69346 1.11467 1.07304 1.20612 1.04229 0.92344 0.79675 1.20614 0.96098 0.88657 0.99845 1.21984 0.96801 0.95538 1.01056 1.20582 0.92243 0.92505 0.89615 1.44335 1.17345 1.29693 1.41870 1.19543 1.28675 0.94371 0.96079 0.91207 1.25769 1.03152 0.98952 0.96961 1.70191 1.42120 1.31305 1.14761 0.85318 0.78625 0.77922 0.78901 1.21209 1.22749 1.19158 1.21072 0.88460 0.90807 0.98282 1.21872 0.98896 0.96344 0.97945 1.23367 0.96978 1.00043 1.00816 1.23266 0.93954 1.03152 1.01337 0.90530 0.90056 0.87818 0.86827 0.89051 0.88908 0.84858 0.84780 0.74539 0.90918 0.92642 0.92172 0.99069 0.93026 0.94309 0.97260 0.92428 0.90111 0.91311 0.88864 0.88312 0.88751 0.88923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.20 10.39 71.24 0.74 -0.46 16 2 C 0.02 0.52 7.33 43.58 0.32 0.84 16 3 N -0.40 -10.72 12.07 -49.53 -0.60 -11.32 16 4 O 0.08 1.87 11.20 71.58 0.80 2.67 16 5 C -0.02 -0.36 7.49 25.04 0.19 -0.17 16 6 C -0.07 -0.85 10.24 71.23 0.73 -0.12 16 7 C -0.19 -3.75 4.81 -19.73 -0.10 -3.84 16 8 C -0.06 -0.76 5.95 29.10 0.17 -0.59 16 9 C 0.51 10.43 7.53 87.66 0.66 11.09 16 10 O -0.56 -15.82 11.51 -3.04 -0.04 -15.86 16 11 N -0.68 -13.50 5.39 -422.92 -2.28 -15.78 16 12 C 0.12 2.90 2.48 3.61 0.01 2.91 16 13 C -0.03 -0.92 2.28 -10.77 -0.02 -0.95 16 14 C -0.11 -3.89 5.22 30.67 0.16 -3.73 16 15 C 0.18 8.05 5.31 86.36 0.46 8.51 16 16 N -0.61 -28.46 2.99 -699.09 -2.09 -30.56 16 17 C -0.26 -13.34 9.58 84.03 0.81 -12.53 16 18 H 0.07 3.50 7.89 -2.91 -0.02 3.48 16 19 C -0.05 -2.87 4.91 84.86 0.42 -2.46 16 20 N -0.94 -54.33 11.19 21.65 0.24 -54.09 16 21 Si 0.96 43.29 29.59 68.60 2.03 45.32 16 22 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 25 C 0.14 5.15 6.52 86.37 0.56 5.72 16 26 C -0.11 -3.02 4.83 30.67 0.15 -2.87 16 27 C -0.17 -4.39 9.36 30.60 0.29 -4.11 16 28 C -0.18 -4.70 8.91 30.60 0.27 -4.43 16 29 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.10 1.08 7.65 -2.39 -0.02 1.07 16 32 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.09 1.05 8.05 -2.39 -0.02 1.03 16 35 H 0.13 1.11 7.65 -2.39 -0.02 1.09 16 36 H 0.13 1.11 8.08 -2.39 -0.02 1.09 16 37 H 0.42 6.71 6.66 -92.71 -0.62 6.10 16 38 H 0.07 2.16 7.90 -2.39 -0.02 2.14 16 39 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16 40 H 0.06 1.92 7.24 -2.39 -0.02 1.90 16 41 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 42 H 0.05 2.72 6.04 -2.39 -0.01 2.71 16 43 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 44 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.06 2.07 7.93 -2.39 -0.02 2.05 16 46 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.07 1.71 6.50 -2.39 -0.02 1.70 16 48 H 0.09 2.61 6.36 -2.39 -0.02 2.60 16 49 H 0.10 2.31 8.05 -2.39 -0.02 2.29 16 50 H 0.09 2.42 7.60 -2.39 -0.02 2.41 16 51 H 0.09 2.69 6.39 -2.39 -0.02 2.68 16 Total: -1.00 -71.49 401.85 4.21 -67.28 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.33 Total: 19.53 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: 5.81 Total: -7.20 kcal Atomic # 7 Polarization: -107.02 SS G_CDS: -4.73 Total: -111.74 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.77 Total: -13.18 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -71.49 4.21 -67.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284854103.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.011 kcal (2) G-P(sol) polarization free energy of solvation -71.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds