Wall clock time and date at job start Wed Apr 1 2020 04:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41379 * 126.80047 * 2 1 4 4 C 1.35456 * 103.98549 * 180.16661 * 3 2 1 5 5 C 1.50695 * 126.77857 * 179.90731 * 4 3 2 6 6 C 1.50694 * 115.55070 * 330.09650 * 5 4 3 7 7 O 1.21282 * 119.99852 * 89.45247 * 6 5 4 8 8 N 1.34782 * 120.00288 * 269.45124 * 6 5 4 9 9 C 1.46501 * 120.00108 * 184.89084 * 8 6 5 10 10 H 1.09002 * 109.47055 * 324.99974 * 9 8 6 11 11 C 1.52995 * 109.47132 * 84.99856 * 9 8 6 12 12 C 1.53000 * 109.47070 * 205.00072 * 9 8 6 13 13 H 1.08999 * 109.49518 * 59.93551 * 12 9 8 14 14 C 1.53033 * 109.49695 * 179.97438 * 12 9 8 15 15 C 1.53038 * 109.54072 * 181.31664 * 14 12 9 16 16 C 1.53197 * 109.30930 * 298.63707 * 15 14 12 17 17 N 1.46928 * 108.77588 * 54.63488 * 16 15 14 18 18 C 1.36936 * 120.62885 * 126.41234 * 17 16 15 19 19 H 1.08003 * 119.99711 * 211.58163 * 18 17 16 20 20 C 1.38808 * 120.00518 * 31.58636 * 18 17 16 21 21 N 1.31619 * 119.99782 * 10.28754 * 20 18 17 22 22 Si 1.86798 * 120.00031 * 190.29424 * 20 18 17 23 23 H 1.48506 * 109.47216 * 90.00010 * 22 20 18 24 24 H 1.48505 * 109.46964 * 209.99654 * 22 20 18 25 25 H 1.48497 * 109.47462 * 329.99556 * 22 20 18 26 26 C 1.46918 * 118.73610 * 306.38765 * 17 16 15 27 27 C 1.53006 * 117.49833 * 184.43097 * 5 4 3 28 28 C 1.53008 * 60.02808 * 252.47368 * 27 5 4 29 29 O 1.34045 * 106.44114 * 359.64072 * 4 3 2 30 30 N 1.20915 * 111.56865 * 0.24818 * 29 4 3 31 31 H 1.09010 * 109.47127 * 270.25939 * 1 2 3 32 32 H 1.08996 * 109.47100 * 30.25415 * 1 2 3 33 33 H 1.09000 * 109.47465 * 150.25862 * 1 2 3 34 34 H 1.08002 * 128.01239 * 0.06716 * 3 2 1 35 35 H 0.96995 * 119.99338 * 4.89005 * 8 6 5 36 36 H 1.08997 * 109.47556 * 180.02562 * 11 9 8 37 37 H 1.08998 * 109.47595 * 300.00171 * 11 9 8 38 38 H 1.09002 * 109.47055 * 60.00117 * 11 9 8 39 39 H 1.09000 * 109.46402 * 301.33888 * 14 12 9 40 40 H 1.09008 * 109.45777 * 61.29794 * 14 12 9 41 41 H 1.09003 * 109.49644 * 58.58567 * 15 14 12 42 42 H 1.08996 * 109.49954 * 178.65379 * 15 14 12 43 43 H 1.09001 * 109.58249 * 174.41650 * 16 15 14 44 44 H 1.08995 * 109.58818 * 294.70349 * 16 15 14 45 45 H 0.97001 * 120.00117 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.59286 * 293.82462 * 26 17 16 47 47 H 1.09007 * 109.58742 * 173.39435 * 26 17 16 48 48 H 1.09000 * 117.49637 * 359.96774 * 27 5 4 49 49 H 1.08998 * 117.49732 * 144.97820 * 27 5 4 50 50 H 1.09003 * 117.49541 * 107.50161 * 28 27 5 51 51 H 1.09001 * 117.49612 * 252.51657 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6025 0.6068 -0.0038 5 6 4.9021 1.3695 -0.0075 6 6 4.8642 2.7151 -0.6848 7 8 4.5769 3.7066 -0.0482 8 7 5.1496 2.8169 -1.9982 9 6 5.2178 4.1354 -2.6330 10 1 4.4769 4.7950 -2.1811 11 6 6.6151 4.7257 -2.4336 12 6 4.9316 3.9963 -4.1295 13 1 3.9366 3.5747 -4.2720 14 6 5.0021 5.3735 -4.7932 15 6 4.6838 5.2401 -6.2841 16 6 5.7248 4.3310 -6.9450 17 7 5.7655 3.0537 -6.2200 18 6 5.6113 1.8677 -6.8870 19 1 5.1450 1.0276 -6.3939 20 6 6.0544 1.7452 -8.1967 21 7 6.7991 2.6901 -8.7306 22 14 5.5938 0.2394 -9.2016 23 1 4.3188 0.4941 -9.9191 24 1 6.6678 -0.0457 -10.1868 25 1 5.4287 -0.9273 -8.2978 26 6 5.9754 3.0732 -4.7661 27 6 6.1960 0.5601 -0.1164 28 6 5.8152 1.2176 1.2117 29 8 3.4537 -0.7253 0.0023 30 7 2.2868 -1.0423 0.0042 31 1 -0.3634 0.0047 1.0277 32 1 -0.3633 0.8877 -0.5178 33 1 -0.3634 -0.8923 -0.5098 34 1 2.0710 2.1744 0.0010 35 1 5.3097 2.0170 -2.5229 36 1 6.6658 5.7070 -2.9055 37 1 6.8190 4.8248 -1.3674 38 1 7.3560 4.0662 -2.8854 39 1 4.2773 6.0397 -4.3253 40 1 6.0044 5.7845 -4.6712 41 1 3.6914 4.8061 -6.4068 42 1 4.7107 6.2245 -6.7514 43 1 5.4472 4.1528 -7.9839 44 1 6.7042 4.8076 -6.9051 45 1 7.1084 2.6047 -9.6460 46 1 6.9756 3.4462 -4.5461 47 1 5.8631 2.0649 -4.3671 48 1 6.1071 -0.5241 -0.1848 49 1 7.0195 1.0008 -0.6781 50 1 5.4758 0.5659 2.0168 51 1 6.3880 2.0910 1.5234 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317208945.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:00 Heat of formation + Delta-G solvation = 63.785418 kcal Electronic energy + Delta-G solvation = -31652.553644 eV Core-core repulsion = 27556.472808 eV Total energy + Delta-G solvation = -4096.080837 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.11896 -40.40153 -38.39918 -36.93490 -35.24388 -34.96150 -33.05457 -31.71109 -31.02784 -30.47928 -28.90197 -28.18907 -25.50494 -25.30947 -23.76536 -23.42670 -22.72153 -22.24445 -21.30556 -20.34679 -19.56797 -18.67499 -17.99830 -17.74972 -16.96471 -16.61224 -16.00549 -15.67020 -14.96006 -14.76770 -14.62460 -14.17671 -13.97980 -13.80991 -13.60484 -13.51936 -13.49034 -13.23236 -13.09956 -12.68054 -12.59614 -12.43853 -12.31537 -11.95330 -11.88902 -11.68874 -11.59447 -11.34305 -11.14895 -11.00603 -10.95239 -10.62024 -10.53101 -10.19968 -10.18123 -10.17087 -9.95582 -9.89780 -9.64027 -9.43810 -9.36762 -9.02420 -8.50801 -6.64660 -5.81932 -3.30873 1.18561 2.02358 2.16856 2.72256 3.22886 3.34372 3.37945 3.41504 3.42157 3.95617 4.00077 4.32689 4.43957 4.45604 4.57620 4.84047 4.99469 5.02203 5.17052 5.22872 5.25318 5.29330 5.29808 5.36311 5.38275 5.49629 5.53399 5.55851 5.60465 5.63016 5.67266 5.71920 5.79891 5.91404 5.96041 6.06218 6.17977 6.19388 6.29407 6.43837 6.54135 6.56452 6.67811 6.74209 6.84170 6.93922 7.38846 7.46513 7.67866 7.75302 8.06542 8.09579 8.43981 9.18667 9.79851 10.37874 11.25612 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009684 B = 0.003222 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.807618 B = 8689.417463 C = 9981.148158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.019 3.981 3 C -0.215 4.215 4 C 0.014 3.986 5 C -0.092 4.092 6 C 0.561 3.439 7 O -0.531 6.531 8 N -0.708 5.708 9 C 0.148 3.852 10 H 0.083 0.917 11 C -0.165 4.165 12 C -0.113 4.113 13 H 0.071 0.929 14 C -0.100 4.100 15 C -0.143 4.143 16 C 0.171 3.829 17 N -0.590 5.590 18 C -0.255 4.255 19 H 0.063 0.937 20 C 0.007 3.993 21 N -0.903 5.903 22 Si 0.903 3.097 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.152 3.848 27 C -0.151 4.151 28 C -0.126 4.126 29 O 0.103 5.897 30 N -0.363 5.363 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.172 0.828 35 H 0.406 0.594 36 H 0.070 0.930 37 H 0.051 0.949 38 H 0.066 0.934 39 H 0.046 0.954 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.049 0.951 43 H 0.087 0.913 44 H 0.017 0.983 45 H 0.254 0.746 46 H 0.025 0.975 47 H 0.046 0.954 48 H 0.115 0.885 49 H 0.115 0.885 50 H 0.109 0.891 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.842 -0.088 18.208 18.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.139 4.139 3 C -0.236 4.236 4 C -0.050 4.050 5 C -0.097 4.097 6 C 0.344 3.656 7 O -0.407 6.407 8 N -0.359 5.359 9 C 0.044 3.956 10 H 0.102 0.898 11 C -0.223 4.223 12 C -0.134 4.134 13 H 0.090 0.910 14 C -0.138 4.138 15 C -0.183 4.183 16 C 0.045 3.955 17 N -0.313 5.313 18 C -0.385 4.385 19 H 0.080 0.920 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.733 3.267 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.204 1.204 26 C 0.025 3.975 27 C -0.188 4.188 28 C -0.164 4.164 29 O 0.037 5.963 30 N -0.068 5.068 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.189 0.811 35 H 0.242 0.758 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.105 0.895 44 H 0.036 0.964 45 H 0.064 0.936 46 H 0.043 0.957 47 H 0.065 0.935 48 H 0.133 0.867 49 H 0.133 0.867 50 H 0.127 0.873 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.179 -0.703 18.463 19.188 hybrid contribution -0.321 -0.293 -0.919 1.017 sum -5.500 -0.996 17.544 18.413 Atomic orbital electron populations 1.20181 0.85772 1.04021 1.03356 1.23583 0.99134 0.88603 1.02613 1.22391 0.90854 1.01351 1.09007 1.22701 0.95340 0.83637 1.03291 1.19372 0.87773 0.95032 1.07512 1.18844 0.76766 0.87687 0.82254 1.90707 1.47644 1.37694 1.64649 1.46195 1.70329 1.10715 1.08696 1.21102 0.98005 0.83122 0.93370 0.89847 1.22269 0.96891 1.01769 1.01398 1.21960 1.01741 0.98534 0.91164 0.91029 1.21431 1.00820 0.95028 0.96555 1.22199 1.01467 0.99698 0.94893 1.20796 0.93610 0.84008 0.97090 1.43961 1.83782 1.02644 1.00870 1.19151 1.32449 0.90759 0.96126 0.91957 1.25148 0.97285 0.97692 0.99093 1.69974 1.36399 1.33908 1.14447 0.86287 0.77637 0.82703 0.80094 1.21410 1.21633 1.20404 1.20969 0.94374 0.95812 0.86308 1.23308 0.94749 1.00528 1.00201 1.23161 0.98729 1.03402 0.91080 1.84795 1.21790 1.21956 1.67779 1.73849 0.89101 1.23783 1.20060 0.90142 0.89837 0.90423 0.81059 0.75805 0.91139 0.92967 0.91490 0.93568 0.92138 0.92888 0.93238 0.89498 0.96446 0.93578 0.95714 0.93542 0.86658 0.86684 0.87272 0.86861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.47 36.01 0.38 -0.26 16 2 C 0.02 0.23 7.33 -82.10 -0.60 -0.37 16 3 C -0.21 -2.59 10.59 -39.38 -0.42 -3.01 16 4 C 0.01 0.17 6.77 -35.30 -0.24 -0.07 16 5 C -0.09 -0.99 2.39 -156.78 -0.37 -1.37 16 6 C 0.56 7.25 6.52 -10.99 -0.07 7.18 16 7 O -0.53 -8.35 16.73 5.56 0.09 -8.26 16 8 N -0.71 -9.00 4.99 -53.81 -0.27 -9.26 16 9 C 0.15 2.02 2.45 -67.93 -0.17 1.85 16 10 H 0.08 1.20 7.51 -51.93 -0.39 0.81 16 11 C -0.17 -2.11 8.78 37.15 0.33 -1.78 16 12 C -0.11 -1.80 2.33 -90.50 -0.21 -2.01 16 13 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 14 C -0.10 -1.58 4.78 -26.69 -0.13 -1.71 16 15 C -0.14 -2.64 6.08 -26.61 -0.16 -2.80 16 16 C 0.17 3.93 5.25 -3.71 -0.02 3.91 16 17 N -0.59 -14.06 2.99 -172.32 -0.51 -14.57 16 18 C -0.26 -6.76 9.58 -15.06 -0.14 -6.90 16 19 H 0.06 1.63 7.85 -52.48 -0.41 1.22 16 20 C 0.01 0.18 5.06 -17.43 -0.09 0.09 16 21 N -0.90 -25.55 11.05 55.49 0.61 -24.94 16 22 Si 0.90 21.30 29.57 -169.99 -5.03 16.28 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 C 0.15 2.89 5.30 -3.71 -0.02 2.87 16 27 C -0.15 -1.26 9.88 -26.72 -0.26 -1.52 16 28 C -0.13 -1.07 9.94 -26.69 -0.27 -1.34 16 29 O 0.10 1.32 10.97 17.16 0.19 1.51 16 30 N -0.36 -4.91 12.07 33.42 0.40 -4.51 16 31 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.17 1.96 8.06 -52.49 -0.42 1.54 16 35 H 0.41 4.99 6.98 -40.82 -0.29 4.70 16 36 H 0.07 0.87 6.46 -51.93 -0.34 0.53 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.88 6.32 -51.93 -0.33 0.55 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.94 6.50 -51.92 -0.34 0.60 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.09 2.27 6.11 -51.93 -0.32 1.96 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.03 0.48 6.17 -51.93 -0.32 0.16 16 47 H 0.05 0.85 6.53 -51.92 -0.34 0.51 16 48 H 0.12 0.88 8.00 -51.93 -0.42 0.46 16 49 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 51 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 405.68 15.07 6.11 6.11 Total: -1.00 -31.07 405.68 -8.98 -40.04 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -8.11 Total: 4.83 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -2.47 Total: -7.24 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: 0.23 Total: -53.28 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: 0.28 Total: -6.75 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.07 -8.98 -40.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317208945.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.828 kcal (2) G-P(sol) polarization free energy of solvation -31.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds