Wall clock time and date at job start Wed Apr 1 2020 04:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.41380 * 126.79754 * 2 1 4 4 C 1.35452 * 103.98431 * 180.16388 * 3 2 1 5 5 C 1.50694 * 126.77836 * 179.90668 * 4 3 2 6 6 C 1.50697 * 115.55100 * 66.59857 * 5 4 3 7 7 O 1.21276 * 120.00034 * 235.89584 * 6 5 4 8 8 N 1.34783 * 120.00142 * 55.89225 * 6 5 4 9 9 C 1.46498 * 120.00159 * 185.11860 * 8 6 5 10 10 H 1.09010 * 109.46840 * 35.00796 * 9 8 6 11 11 C 1.52995 * 109.47519 * 275.00585 * 9 8 6 12 12 C 1.52999 * 109.46802 * 154.99764 * 9 8 6 13 13 H 1.09001 * 109.49355 * 60.07090 * 12 9 8 14 14 C 1.53041 * 109.49494 * 180.16346 * 12 9 8 15 15 C 1.53356 * 109.60658 * 181.33123 * 14 12 9 16 16 C 1.53195 * 109.15002 * 298.71304 * 15 14 12 17 17 N 1.46929 * 108.89189 * 54.57416 * 16 15 14 18 18 C 1.36941 * 120.62872 * 126.33904 * 17 16 15 19 19 H 1.07995 * 120.00039 * 214.97256 * 18 17 16 20 20 C 1.38813 * 119.99250 * 34.97826 * 18 17 16 21 21 N 1.31616 * 120.00858 * 24.83242 * 20 18 17 22 22 Si 1.86804 * 119.99497 * 204.82997 * 20 18 17 23 23 H 1.48506 * 109.47372 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47202 * 120.00150 * 22 20 18 25 25 H 1.48501 * 109.47036 * 240.00040 * 22 20 18 26 26 C 1.46920 * 118.74160 * 306.32548 * 17 16 15 27 27 C 1.53002 * 117.49886 * 212.26757 * 5 4 3 28 28 C 1.53005 * 117.50214 * 280.92655 * 5 4 3 29 29 O 1.34045 * 106.44439 * 359.64291 * 4 3 2 30 30 N 1.20927 * 111.56814 * 0.24380 * 29 4 3 31 31 H 1.08994 * 109.47180 * 270.26067 * 1 2 3 32 32 H 1.08998 * 109.47052 * 30.26359 * 1 2 3 33 33 H 1.09005 * 109.46731 * 150.25424 * 1 2 3 34 34 H 1.08002 * 128.01040 * 0.06641 * 3 2 1 35 35 H 0.97001 * 119.99918 * 5.12615 * 8 6 5 36 36 H 1.09001 * 109.47186 * 180.02562 * 11 9 8 37 37 H 1.09004 * 109.46975 * 299.99582 * 11 9 8 38 38 H 1.08998 * 109.47259 * 59.99496 * 11 9 8 39 39 H 1.09000 * 109.46489 * 301.33836 * 14 12 9 40 40 H 1.09001 * 109.46166 * 61.31939 * 14 12 9 41 41 H 1.09003 * 109.68549 * 178.74756 * 15 14 12 42 42 H 1.09002 * 109.47541 * 58.55373 * 15 14 12 43 43 H 1.08999 * 109.58372 * 294.72444 * 16 15 14 44 44 H 1.08994 * 109.58899 * 174.43747 * 16 15 14 45 45 H 0.96996 * 120.00387 * 179.97438 * 21 20 18 46 46 H 1.09004 * 109.58848 * 173.39227 * 26 17 16 47 47 H 1.09006 * 109.58649 * 293.67755 * 26 17 16 48 48 H 1.09008 * 117.49855 * 215.00634 * 27 5 4 49 49 H 1.09004 * 117.50023 * 0.02562 * 27 5 4 50 50 H 1.08998 * 117.49502 * 359.97438 * 28 5 4 51 51 H 1.08995 * 117.49781 * 144.97734 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6025 0.6069 -0.0038 5 6 4.9021 1.3697 -0.0074 6 6 5.1930 2.1641 1.2397 7 8 5.4137 3.3542 1.1629 8 7 5.2079 1.5521 2.4405 9 6 5.3791 2.3413 3.6628 10 1 4.8829 3.3048 3.5456 11 6 6.8705 2.5638 3.9216 12 6 4.7625 1.5907 4.8449 13 1 5.2591 0.6276 4.9631 14 6 4.9374 2.4165 6.1215 15 6 4.3498 1.6516 7.3137 16 6 2.8522 1.4295 7.0795 17 7 2.6671 0.7638 5.7828 18 6 1.9467 -0.3972 5.6911 19 1 2.2363 -1.1577 4.9812 20 6 0.8441 -0.5963 6.5106 21 7 0.1934 0.4373 7.0012 22 14 0.2839 -2.3313 6.9172 23 1 1.1774 -3.3099 6.2469 24 1 0.3385 -2.5376 8.3868 25 1 -1.1094 -2.5258 6.4415 26 6 3.2691 1.3677 4.5864 27 6 6.0901 0.7377 -0.7356 28 6 5.3774 1.9495 -1.3412 29 8 3.4538 -0.7252 0.0023 30 7 2.2868 -1.0423 0.0043 31 1 -0.3633 0.0047 1.0276 32 1 -0.3633 0.8876 -0.5179 33 1 -0.3633 -0.8923 -0.5099 34 1 2.0709 2.1744 0.0010 35 1 5.1053 0.5891 2.4953 36 1 6.9978 3.1506 4.8314 37 1 7.3665 1.6003 4.0389 38 1 7.3096 3.0984 3.0794 39 1 5.9983 2.5975 6.2945 40 1 4.4196 3.3693 6.0115 41 1 4.4935 2.2287 8.2272 42 1 4.8500 0.6878 7.4093 43 1 2.3369 2.3899 7.0740 44 1 2.4473 0.8020 7.8735 45 1 -0.5772 0.2981 7.5736 46 1 3.1416 0.6983 3.7356 47 1 2.7861 2.3220 4.3762 48 1 7.0821 0.8965 -0.3125 49 1 5.9315 -0.2296 -1.2124 50 1 4.7501 1.7788 -2.2161 51 1 5.9000 2.9056 -1.3167 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317208947.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:02 Heat of formation + Delta-G solvation = 41.560399 kcal Electronic energy + Delta-G solvation = -32260.857894 eV Core-core repulsion = 28163.813308 eV Total energy + Delta-G solvation = -4097.044586 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -46.01360 -41.38020 -39.67341 -37.86323 -36.62907 -35.79571 -34.72277 -32.76371 -32.45731 -32.07325 -29.99598 -29.64986 -27.19167 -26.27930 -24.70617 -24.35052 -23.64896 -23.33087 -22.50514 -21.66531 -21.08237 -20.21812 -19.09343 -18.66404 -18.61526 -17.57103 -17.22554 -16.82788 -16.40520 -15.99878 -15.73669 -15.55633 -15.28979 -14.98225 -14.86575 -14.72764 -14.31918 -14.25805 -14.17406 -14.05328 -13.97986 -13.70655 -13.41813 -13.37124 -13.00792 -12.85084 -12.65335 -12.59617 -12.41265 -12.35677 -12.28448 -12.04561 -11.95512 -11.81181 -11.68907 -11.53444 -11.28875 -11.11938 -11.05669 -10.97812 -10.57763 -10.32016 -10.10430 -8.67301 -7.94250 -5.43429 0.33318 1.15524 1.25787 1.38743 1.42329 1.52830 1.95152 2.18088 2.45252 2.57694 3.16151 3.20549 3.32506 3.47732 3.57449 3.68702 3.83757 3.89745 3.97716 4.03363 4.04189 4.22507 4.31330 4.41621 4.46542 4.47682 4.60936 4.61285 4.63144 4.68338 4.72731 4.80442 4.81551 4.82155 4.85716 4.92432 4.93070 5.03132 5.08743 5.14287 5.16560 5.20868 5.24725 5.31274 5.39622 5.45608 5.53277 5.63303 5.68746 6.35009 6.44180 7.09502 7.09829 7.21895 7.78920 8.36627 9.08901 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008755 B = 0.004435 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3197.290991 B = 6311.516564 C = 8751.287560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.011 3.989 3 C -0.219 4.219 4 C 0.008 3.992 5 C -0.114 4.114 6 C 0.562 3.438 7 O -0.560 6.560 8 N -0.708 5.708 9 C 0.156 3.844 10 H 0.067 0.933 11 C -0.152 4.152 12 C -0.095 4.095 13 H 0.076 0.924 14 C -0.096 4.096 15 C -0.129 4.129 16 C 0.176 3.824 17 N -0.603 5.603 18 C -0.272 4.272 19 H 0.052 0.948 20 C -0.032 4.032 21 N -0.922 5.922 22 Si 0.952 3.048 23 H -0.269 1.269 24 H -0.285 1.285 25 H -0.290 1.290 26 C 0.162 3.838 27 C -0.123 4.123 28 C -0.111 4.111 29 O 0.101 5.899 30 N -0.388 5.388 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.180 0.820 35 H 0.406 0.594 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.091 0.909 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.057 0.943 43 H -0.005 1.005 44 H 0.033 0.967 45 H 0.252 0.748 46 H 0.037 0.963 47 H -0.006 1.006 48 H 0.123 0.877 49 H 0.126 0.874 50 H 0.121 0.879 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.269 3.041 -14.747 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.147 4.147 3 C -0.240 4.240 4 C -0.056 4.056 5 C -0.119 4.119 6 C 0.348 3.652 7 O -0.439 6.439 8 N -0.358 5.358 9 C 0.051 3.949 10 H 0.085 0.915 11 C -0.210 4.210 12 C -0.116 4.116 13 H 0.094 0.906 14 C -0.134 4.134 15 C -0.168 4.168 16 C 0.051 3.949 17 N -0.326 5.326 18 C -0.402 4.402 19 H 0.070 0.930 20 C -0.229 4.229 21 N -0.565 5.565 22 Si 0.780 3.220 23 H -0.193 1.193 24 H -0.211 1.211 25 H -0.217 1.217 26 C 0.037 3.963 27 C -0.160 4.160 28 C -0.148 4.148 29 O 0.035 5.965 30 N -0.093 5.093 31 H 0.091 0.909 32 H 0.124 0.876 33 H 0.102 0.898 34 H 0.198 0.802 35 H 0.241 0.759 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.110 0.890 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.013 0.987 44 H 0.051 0.949 45 H 0.061 0.939 46 H 0.056 0.944 47 H 0.012 0.988 48 H 0.141 0.859 49 H 0.144 0.856 50 H 0.140 0.860 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 13.025 2.569 -14.670 19.785 hybrid contribution -1.497 -0.425 0.716 1.713 sum 11.527 2.145 -13.955 18.227 Atomic orbital electron populations 1.20301 0.84458 1.05128 1.03662 1.24041 1.00333 0.88597 1.01732 1.22596 0.91194 1.01618 1.08640 1.23040 0.95920 0.83270 1.03384 1.19342 0.92454 1.04780 0.95311 1.19239 0.75725 0.86573 0.83677 1.90685 1.50729 1.15849 1.86632 1.46055 1.72517 1.11609 1.05575 1.20950 0.97313 0.94180 0.82458 0.91504 1.22120 0.93545 1.02778 1.02531 1.21757 0.95818 0.99421 0.94582 0.90590 1.21488 1.01571 0.97443 0.92914 1.22044 0.96207 1.00209 0.98313 1.20554 0.93232 0.93877 0.87269 1.44203 1.59861 1.26290 1.02283 1.19222 1.05854 0.93432 1.21668 0.93030 1.25798 0.95201 1.00039 1.01907 1.70259 1.19334 1.30612 1.36340 0.85474 0.77537 0.81236 0.77794 1.19306 1.21088 1.21743 1.20860 0.92017 0.94315 0.89133 1.23360 0.94301 0.99170 0.99120 1.23277 1.01006 0.99376 0.91134 1.84777 1.21402 1.22785 1.67583 1.73843 0.89730 1.24742 1.21035 0.90863 0.87612 0.89798 0.80234 0.75946 0.89960 0.91283 0.92692 0.89018 0.92986 0.90709 0.92437 0.98742 0.94883 0.93942 0.94433 0.98833 0.85850 0.85618 0.86037 0.86316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.84 10.47 71.24 0.75 -1.09 16 2 C 0.01 0.31 7.33 43.58 0.32 0.63 16 3 C -0.22 -5.82 11.06 22.40 0.25 -5.57 16 4 C 0.01 0.19 6.45 25.04 0.16 0.35 16 5 C -0.11 -2.36 2.39 -53.67 -0.13 -2.49 16 6 C 0.56 14.63 7.10 87.66 0.62 15.26 16 7 O -0.56 -17.60 16.15 -3.02 -0.05 -17.65 16 8 N -0.71 -18.25 4.44 -442.53 -1.96 -20.21 16 9 C 0.16 4.18 2.12 44.99 0.10 4.27 16 10 H 0.07 2.08 7.66 -2.38 -0.02 2.06 16 11 C -0.15 -3.19 9.14 71.98 0.66 -2.53 16 12 C -0.10 -2.99 1.98 -10.72 -0.02 -3.01 16 13 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 14 C -0.10 -2.85 4.86 30.73 0.15 -2.70 16 15 C -0.13 -4.51 6.11 30.78 0.19 -4.32 16 16 C 0.18 8.41 5.38 86.36 0.46 8.87 16 17 N -0.60 -30.55 2.94 -699.10 -2.06 -32.61 16 18 C -0.27 -15.27 9.43 84.03 0.79 -14.47 16 19 H 0.05 2.93 7.94 -2.91 -0.02 2.90 16 20 C -0.03 -1.80 4.65 84.86 0.39 -1.40 16 21 N -0.92 -55.47 12.27 21.65 0.27 -55.20 16 22 Si 0.95 45.38 29.62 68.60 2.03 47.41 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 25 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 26 C 0.16 6.89 5.55 86.36 0.48 7.36 16 27 C -0.12 -1.66 9.94 30.62 0.30 -1.36 16 28 C -0.11 -1.66 9.75 30.62 0.30 -1.36 16 29 O 0.10 2.84 11.20 71.58 0.80 3.64 16 30 N -0.39 -12.28 12.07 -49.56 -0.60 -12.88 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.18 4.27 8.06 -2.91 -0.02 4.24 16 35 H 0.41 10.09 8.42 -92.71 -0.78 9.31 16 36 H 0.08 1.53 6.40 -2.39 -0.02 1.51 16 37 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.05 1.21 8.09 -2.39 -0.02 1.19 16 39 H 0.09 2.07 6.36 -2.39 -0.02 2.06 16 40 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 43 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 44 H 0.03 1.75 6.83 -2.39 -0.02 1.74 16 45 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 46 H 0.04 1.63 7.44 -2.38 -0.02 1.61 16 47 H -0.01 -0.29 8.14 -2.38 -0.02 -0.31 16 48 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16 49 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 51 H 0.12 1.83 7.84 -2.39 -0.02 1.81 16 Total: -1.00 -71.94 412.92 4.36 -67.58 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.15 Total: 23.47 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 5.77 Total: -3.56 kcal Atomic # 7 Polarization: -116.54 SS G_CDS: -4.35 Total: -120.90 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.75 Total: -14.01 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -71.94 4.36 -67.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317208947.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.145 kcal (2) G-P(sol) polarization free energy of solvation -71.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds