Wall clock time and date at job start Wed Apr 1 2020 04:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.41375 * 126.80645 * 2 1 4 4 C 1.35448 * 103.98919 * 180.02562 * 3 2 1 5 5 C 1.50695 * 126.78048 * 179.97438 * 4 3 2 6 6 C 1.50703 * 115.55031 * 329.89419 * 5 4 3 7 7 O 1.21282 * 120.00139 * 123.98850 * 6 5 4 8 8 N 1.34782 * 119.99734 * 303.98640 * 6 5 4 9 9 C 1.46492 * 120.00001 * 175.01338 * 8 6 5 10 10 H 1.09003 * 109.47581 * 34.99979 * 9 8 6 11 11 C 1.52996 * 109.47283 * 275.00114 * 9 8 6 12 12 C 1.52998 * 109.47125 * 155.00043 * 9 8 6 13 13 H 1.09002 * 109.52716 * 305.07812 * 12 9 8 14 14 C 1.53042 * 109.49685 * 184.99907 * 12 9 8 15 15 C 1.53042 * 109.52674 * 178.68045 * 14 12 9 16 16 C 1.53189 * 109.31741 * 61.37162 * 15 14 12 17 17 N 1.46928 * 108.77199 * 305.36513 * 16 15 14 18 18 C 1.36935 * 120.63440 * 233.62424 * 17 16 15 19 19 H 1.08000 * 120.00169 * 152.48194 * 18 17 16 20 20 C 1.38813 * 119.99838 * 332.49216 * 18 17 16 21 21 N 1.31619 * 119.99947 * 160.35526 * 20 18 17 22 22 Si 1.86801 * 120.00002 * 340.34999 * 20 18 17 23 23 H 1.48505 * 109.47031 * 95.08118 * 22 20 18 24 24 H 1.48498 * 109.47280 * 215.08005 * 22 20 18 25 25 H 1.48498 * 109.47285 * 335.08301 * 22 20 18 26 26 C 1.46933 * 118.74007 * 53.60895 * 17 16 15 27 27 C 1.53006 * 117.49804 * 115.55678 * 5 4 3 28 28 C 1.53001 * 117.50400 * 184.21804 * 5 4 3 29 29 O 1.34046 * 106.44409 * 0.24158 * 4 3 2 30 30 N 1.20917 * 111.56714 * 359.56530 * 29 4 3 31 31 H 1.08994 * 109.47278 * 89.99725 * 1 2 3 32 32 H 1.08998 * 109.47484 * 210.00240 * 1 2 3 33 33 H 1.09003 * 109.46973 * 330.00211 * 1 2 3 34 34 H 1.07999 * 128.00539 * 0.03303 * 3 2 1 35 35 H 0.96999 * 119.99690 * 355.01550 * 8 6 5 36 36 H 1.09007 * 109.47260 * 59.99891 * 11 9 8 37 37 H 1.09002 * 109.47458 * 180.02562 * 11 9 8 38 38 H 1.09001 * 109.47211 * 300.00326 * 11 9 8 39 39 H 1.08995 * 109.45908 * 58.66722 * 14 12 9 40 40 H 1.08998 * 109.46405 * 298.69115 * 14 12 9 41 41 H 1.08997 * 109.50039 * 181.32828 * 15 14 12 42 42 H 1.09008 * 109.49476 * 301.38987 * 15 14 12 43 43 H 1.08993 * 109.58806 * 65.14909 * 16 15 14 44 44 H 1.09003 * 109.58918 * 185.58278 * 16 15 14 45 45 H 0.96997 * 119.99755 * 180.02562 * 21 20 18 46 46 H 1.09008 * 109.58166 * 66.17213 * 26 17 16 47 47 H 1.08993 * 109.58829 * 186.45722 * 26 17 16 48 48 H 1.08996 * 117.50000 * 215.00281 * 27 5 4 49 49 H 1.08999 * 117.49780 * 0.02906 * 27 5 4 50 50 H 1.09008 * 117.49379 * 359.97438 * 28 5 4 51 51 H 1.08994 * 117.50184 * 144.99654 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1319 0.0000 4 6 3.6025 0.6067 -0.0006 5 6 4.9022 1.3693 -0.0014 6 6 4.8672 2.7126 -0.6836 7 8 5.2003 3.7092 -0.0779 8 7 4.4658 2.8065 -1.9668 9 6 4.3270 4.1219 -2.5965 10 1 5.0975 4.7912 -2.2137 11 6 2.9462 4.6977 -2.2759 12 6 4.4813 3.9806 -4.1121 13 1 5.4270 3.4877 -4.3377 14 6 4.4610 5.3674 -4.7591 15 6 4.6482 5.2289 -6.2717 16 6 3.4927 4.4077 -6.8523 17 7 3.4146 3.1281 -6.1343 18 6 3.4266 1.9422 -6.8187 19 1 3.8068 1.0491 -6.3451 20 6 2.9501 1.8877 -8.1214 21 7 3.2988 0.8922 -8.9086 22 14 1.8140 3.2274 -8.7571 23 1 2.6126 4.2564 -9.4703 24 1 0.8235 2.6344 -9.6911 25 1 1.1029 3.8564 -7.6153 26 6 3.3236 3.1452 -4.6679 27 6 5.8085 1.2220 1.2226 28 6 6.1965 0.5596 -0.1018 29 8 3.4537 -0.7255 -0.0063 30 7 2.2868 -1.0424 -0.0006 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 2.0711 2.1742 0.0005 35 1 4.2688 2.0031 -2.4733 36 1 2.8363 4.7983 -1.1961 37 1 2.8428 5.6762 -2.7448 38 1 2.1757 4.0285 -2.6586 39 1 5.2688 5.9721 -4.3470 40 1 3.5053 5.8498 -4.5542 41 1 4.6573 6.2182 -6.7292 42 1 5.5926 4.7246 -6.4767 43 1 2.5578 4.9539 -6.7282 44 1 3.6723 4.2220 -7.9113 45 1 2.9661 0.8544 -9.8189 46 1 2.3747 3.5887 -4.3658 47 1 3.3889 2.1265 -4.2858 48 1 6.3794 2.0966 1.5343 49 1 5.4648 0.5731 2.0281 50 1 6.1079 -0.5250 -0.1668 51 1 7.0226 0.9983 -0.6613 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317208951.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:10 Heat of formation + Delta-G solvation = 70.268242 kcal Electronic energy + Delta-G solvation = -32015.750958 eV Core-core repulsion = 27919.951237 eV Total energy + Delta-G solvation = -4095.799720 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.10805 -40.45720 -38.64255 -36.95724 -35.42610 -34.95085 -33.12130 -31.77685 -31.29272 -30.84194 -28.87040 -28.57852 -25.60168 -25.38707 -23.92670 -23.42947 -22.77909 -22.13686 -21.46449 -20.70907 -19.58746 -18.87967 -18.15097 -17.73058 -16.90206 -16.67131 -16.07598 -15.52705 -15.42967 -14.90349 -14.80924 -14.44671 -13.96419 -13.87104 -13.58185 -13.53753 -13.48430 -13.30343 -13.18770 -13.00458 -12.79179 -12.60423 -12.32360 -12.12104 -11.94710 -11.85391 -11.61722 -11.50368 -11.33990 -11.22589 -11.09985 -10.70188 -10.58762 -10.47712 -10.16446 -10.15305 -10.02236 -9.88066 -9.68357 -9.49542 -9.36998 -9.07913 -8.65880 -7.00405 -5.98324 -3.35185 1.19518 2.04146 2.12582 2.79958 3.06929 3.29055 3.43761 3.45315 3.47407 3.95760 4.01998 4.36819 4.43172 4.49223 4.56020 4.73324 4.83994 5.01236 5.03528 5.13374 5.21745 5.25084 5.28901 5.31278 5.32198 5.34177 5.45707 5.47616 5.51277 5.57176 5.59939 5.62327 5.74960 5.76584 5.90792 5.93190 5.97342 5.98654 6.08849 6.20993 6.30740 6.35134 6.44320 6.52408 6.53941 6.65477 6.67480 6.93123 7.40960 7.91564 8.05114 8.08988 8.28367 8.89516 9.68038 10.05536 11.17545 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010681 B = 0.003457 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.955914 B = 8097.447651 C = 9300.446341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.022 3.978 3 C -0.214 4.214 4 C 0.008 3.992 5 C -0.097 4.097 6 C 0.563 3.437 7 O -0.532 6.532 8 N -0.710 5.710 9 C 0.149 3.851 10 H 0.086 0.914 11 C -0.167 4.167 12 C -0.115 4.115 13 H 0.078 0.922 14 C -0.101 4.101 15 C -0.135 4.135 16 C 0.125 3.875 17 N -0.605 5.605 18 C -0.262 4.262 19 H 0.084 0.916 20 C 0.024 3.976 21 N -0.908 5.908 22 Si 0.884 3.116 23 H -0.289 1.289 24 H -0.304 1.304 25 H -0.270 1.270 26 C 0.154 3.846 27 C -0.125 4.125 28 C -0.142 4.142 29 O 0.104 5.896 30 N -0.362 5.362 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.170 0.830 35 H 0.405 0.595 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.025 0.975 44 H 0.070 0.930 45 H 0.263 0.737 46 H 0.030 0.970 47 H 0.055 0.945 48 H 0.118 0.882 49 H 0.108 0.892 50 H 0.116 0.884 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.154 3.732 19.643 20.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.137 4.137 3 C -0.236 4.236 4 C -0.055 4.055 5 C -0.101 4.101 6 C 0.347 3.653 7 O -0.408 6.408 8 N -0.361 5.361 9 C 0.045 3.955 10 H 0.104 0.896 11 C -0.225 4.225 12 C -0.135 4.135 13 H 0.096 0.904 14 C -0.139 4.139 15 C -0.174 4.174 16 C -0.001 4.001 17 N -0.328 5.328 18 C -0.390 4.390 19 H 0.102 0.898 20 C -0.175 4.175 21 N -0.551 5.551 22 Si 0.715 3.285 23 H -0.217 1.217 24 H -0.232 1.232 25 H -0.195 1.195 26 C 0.028 3.972 27 C -0.162 4.162 28 C -0.179 4.179 29 O 0.037 5.963 30 N -0.066 5.066 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.187 0.813 35 H 0.241 0.759 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.043 0.957 44 H 0.088 0.912 45 H 0.072 0.928 46 H 0.047 0.953 47 H 0.074 0.926 48 H 0.136 0.864 49 H 0.126 0.874 50 H 0.134 0.866 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.104 3.024 19.893 20.151 hybrid contribution -0.940 1.116 -0.902 1.716 sum 0.163 4.140 18.991 19.437 Atomic orbital electron populations 1.20195 0.85766 1.03676 1.03834 1.23574 0.99140 0.88528 1.02418 1.22324 0.90811 1.01215 1.09209 1.22815 0.95387 0.83799 1.03543 1.19466 0.87954 0.95066 1.07642 1.18841 0.76893 0.87704 0.81910 1.90710 1.48199 1.36773 1.65129 1.46120 1.67523 1.10486 1.11928 1.21069 0.98094 0.83491 0.92878 0.89560 1.22288 0.97144 1.01708 1.01339 1.21953 1.01994 0.98216 0.91366 0.90375 1.21422 1.01126 0.95409 0.95960 1.22007 1.00923 0.99417 0.95074 1.21351 0.94962 0.86996 0.96766 1.44304 1.85783 1.02055 1.00643 1.18895 1.35988 0.87556 0.96542 0.89824 1.25265 0.98910 0.96646 0.96641 1.69826 1.45412 1.33020 1.06878 0.86928 0.81845 0.81497 0.78248 1.21709 1.23239 1.19464 1.21014 0.94160 0.97325 0.84711 1.23183 0.98825 1.03448 0.90793 1.23243 0.94173 1.00187 1.00346 1.84807 1.21833 1.21940 1.67685 1.73867 0.89067 1.23772 1.19906 0.89715 0.90541 0.89998 0.81289 0.75887 0.92831 0.91225 0.91503 0.92811 0.92105 0.92707 0.91753 0.95677 0.91178 0.92758 0.95260 0.92613 0.86361 0.87378 0.86616 0.86928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.47 36.01 0.38 -0.29 16 2 C 0.02 0.26 7.33 -82.10 -0.60 -0.34 16 3 C -0.21 -2.42 10.59 -39.38 -0.42 -2.83 16 4 C 0.01 0.09 6.74 -35.31 -0.24 -0.14 16 5 C -0.10 -1.00 2.44 -156.81 -0.38 -1.39 16 6 C 0.56 6.95 6.74 -10.98 -0.07 6.88 16 7 O -0.53 -7.97 16.12 5.56 0.09 -7.88 16 8 N -0.71 -8.62 4.98 -53.81 -0.27 -8.89 16 9 C 0.15 1.89 2.39 -67.94 -0.16 1.72 16 10 H 0.09 1.15 7.51 -51.93 -0.39 0.76 16 11 C -0.17 -1.98 8.76 37.16 0.33 -1.65 16 12 C -0.11 -1.69 2.27 -90.50 -0.21 -1.89 16 13 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 14 C -0.10 -1.44 4.89 -26.69 -0.13 -1.57 16 15 C -0.13 -2.26 6.08 -26.61 -0.16 -2.43 16 16 C 0.12 2.62 4.18 -3.71 -0.02 2.60 16 17 N -0.60 -13.68 2.77 -172.31 -0.48 -14.15 16 18 C -0.26 -7.10 10.04 -15.06 -0.15 -7.25 16 19 H 0.08 2.43 8.06 -52.49 -0.42 2.00 16 20 C 0.02 0.69 5.25 -17.43 -0.09 0.60 16 21 N -0.91 -27.52 13.97 55.49 0.78 -26.75 16 22 Si 0.88 22.07 24.34 -169.99 -4.14 17.94 16 23 H -0.29 -7.00 6.72 56.52 0.38 -6.62 16 24 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 25 H -0.27 -6.56 6.40 56.52 0.36 -6.20 16 26 C 0.15 2.76 5.26 -3.71 -0.02 2.75 16 27 C -0.12 -1.05 9.75 -26.69 -0.26 -1.31 16 28 C -0.14 -1.18 9.89 -26.69 -0.26 -1.45 16 29 O 0.10 1.31 10.96 17.16 0.19 1.49 16 30 N -0.36 -4.88 12.07 33.42 0.40 -4.47 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.41 4.94 7.29 -40.82 -0.30 4.64 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.78 6.59 -51.93 -0.34 0.44 16 38 H 0.07 0.82 6.23 -51.93 -0.32 0.50 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.83 6.63 -51.93 -0.34 0.49 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 43 H 0.03 0.53 6.95 -51.93 -0.36 0.16 16 44 H 0.07 1.64 4.50 -51.93 -0.23 1.40 16 45 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 46 H 0.03 0.52 6.06 -51.92 -0.31 0.20 16 47 H 0.06 1.00 6.76 -51.93 -0.35 0.65 16 48 H 0.12 1.01 7.84 -51.93 -0.41 0.61 16 49 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.12 0.87 8.00 -51.92 -0.42 0.45 16 51 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 398.70 15.07 6.01 6.01 Total: -1.00 -32.31 398.70 -7.94 -40.25 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -8.05 Total: 4.47 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -2.47 Total: -8.00 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 0.43 Total: -54.27 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: 0.28 Total: -6.39 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.14 Total: 17.94 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.31 -7.94 -40.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317208951.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.517 kcal (2) G-P(sol) polarization free energy of solvation -32.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds