Wall clock time and date at job start Wed Apr 1 2020 04:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.41375 * 126.80645 * 2 1 4 4 C 1.35448 * 103.98919 * 180.02562 * 3 2 1 5 5 C 1.50695 * 126.78048 * 179.97438 * 4 3 2 6 6 C 1.50703 * 115.55031 * 329.89419 * 5 4 3 7 7 O 1.21282 * 120.00139 * 123.98850 * 6 5 4 8 8 N 1.34782 * 119.99734 * 303.98640 * 6 5 4 9 9 C 1.46492 * 120.00001 * 175.01338 * 8 6 5 10 10 H 1.09003 * 109.47581 * 34.99979 * 9 8 6 11 11 C 1.52996 * 109.47283 * 275.00114 * 9 8 6 12 12 C 1.52998 * 109.47125 * 155.00043 * 9 8 6 13 13 H 1.09002 * 109.52716 * 305.07812 * 12 9 8 14 14 C 1.53042 * 109.49685 * 184.99907 * 12 9 8 15 15 C 1.53042 * 109.52674 * 178.68045 * 14 12 9 16 16 C 1.53189 * 109.31741 * 61.37162 * 15 14 12 17 17 N 1.46928 * 108.77199 * 305.36513 * 16 15 14 18 18 C 1.36935 * 120.63440 * 233.62424 * 17 16 15 19 19 H 1.08000 * 120.00169 * 152.48194 * 18 17 16 20 20 C 1.38813 * 119.99838 * 332.49216 * 18 17 16 21 21 N 1.31619 * 119.99947 * 160.35526 * 20 18 17 22 22 Si 1.86801 * 120.00002 * 340.34999 * 20 18 17 23 23 H 1.48505 * 109.47031 * 95.08118 * 22 20 18 24 24 H 1.48498 * 109.47280 * 215.08005 * 22 20 18 25 25 H 1.48498 * 109.47285 * 335.08301 * 22 20 18 26 26 C 1.46933 * 118.74007 * 53.60895 * 17 16 15 27 27 C 1.53006 * 117.49804 * 115.55678 * 5 4 3 28 28 C 1.53001 * 117.50400 * 184.21804 * 5 4 3 29 29 O 1.34046 * 106.44409 * 0.24158 * 4 3 2 30 30 N 1.20917 * 111.56714 * 359.56530 * 29 4 3 31 31 H 1.08994 * 109.47278 * 89.99725 * 1 2 3 32 32 H 1.08998 * 109.47484 * 210.00240 * 1 2 3 33 33 H 1.09003 * 109.46973 * 330.00211 * 1 2 3 34 34 H 1.07999 * 128.00539 * 0.03303 * 3 2 1 35 35 H 0.96999 * 119.99690 * 355.01550 * 8 6 5 36 36 H 1.09007 * 109.47260 * 59.99891 * 11 9 8 37 37 H 1.09002 * 109.47458 * 180.02562 * 11 9 8 38 38 H 1.09001 * 109.47211 * 300.00326 * 11 9 8 39 39 H 1.08995 * 109.45908 * 58.66722 * 14 12 9 40 40 H 1.08998 * 109.46405 * 298.69115 * 14 12 9 41 41 H 1.08997 * 109.50039 * 181.32828 * 15 14 12 42 42 H 1.09008 * 109.49476 * 301.38987 * 15 14 12 43 43 H 1.08993 * 109.58806 * 65.14909 * 16 15 14 44 44 H 1.09003 * 109.58918 * 185.58278 * 16 15 14 45 45 H 0.96997 * 119.99755 * 180.02562 * 21 20 18 46 46 H 1.09008 * 109.58166 * 66.17213 * 26 17 16 47 47 H 1.08993 * 109.58829 * 186.45722 * 26 17 16 48 48 H 1.08996 * 117.50000 * 215.00281 * 27 5 4 49 49 H 1.08999 * 117.49780 * 0.02906 * 27 5 4 50 50 H 1.09008 * 117.49379 * 359.97438 * 28 5 4 51 51 H 1.08994 * 117.50184 * 144.99654 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1319 0.0000 4 6 3.6025 0.6067 -0.0006 5 6 4.9022 1.3693 -0.0014 6 6 4.8672 2.7126 -0.6836 7 8 5.2003 3.7092 -0.0779 8 7 4.4658 2.8065 -1.9668 9 6 4.3270 4.1219 -2.5965 10 1 5.0975 4.7912 -2.2137 11 6 2.9462 4.6977 -2.2759 12 6 4.4813 3.9806 -4.1121 13 1 5.4270 3.4877 -4.3377 14 6 4.4610 5.3674 -4.7591 15 6 4.6482 5.2289 -6.2717 16 6 3.4927 4.4077 -6.8523 17 7 3.4146 3.1281 -6.1343 18 6 3.4266 1.9422 -6.8187 19 1 3.8068 1.0491 -6.3451 20 6 2.9501 1.8877 -8.1214 21 7 3.2988 0.8922 -8.9086 22 14 1.8140 3.2274 -8.7571 23 1 2.6126 4.2564 -9.4703 24 1 0.8235 2.6344 -9.6911 25 1 1.1029 3.8564 -7.6153 26 6 3.3236 3.1452 -4.6679 27 6 5.8085 1.2220 1.2226 28 6 6.1965 0.5596 -0.1018 29 8 3.4537 -0.7255 -0.0063 30 7 2.2868 -1.0424 -0.0006 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 2.0711 2.1742 0.0005 35 1 4.2688 2.0031 -2.4733 36 1 2.8363 4.7983 -1.1961 37 1 2.8428 5.6762 -2.7448 38 1 2.1757 4.0285 -2.6586 39 1 5.2688 5.9721 -4.3470 40 1 3.5053 5.8498 -4.5542 41 1 4.6573 6.2182 -6.7292 42 1 5.5926 4.7246 -6.4767 43 1 2.5578 4.9539 -6.7282 44 1 3.6723 4.2220 -7.9113 45 1 2.9661 0.8544 -9.8189 46 1 2.3747 3.5887 -4.3658 47 1 3.3889 2.1265 -4.2858 48 1 6.3794 2.0966 1.5343 49 1 5.4648 0.5731 2.0281 50 1 6.1079 -0.5250 -0.1668 51 1 7.0226 0.9983 -0.6613 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317208951.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:09 Heat of formation + Delta-G solvation = 50.375463 kcal Electronic energy + Delta-G solvation = -32016.613573 eV Core-core repulsion = 27919.951237 eV Total energy + Delta-G solvation = -4096.662336 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -46.01960 -41.45301 -39.91910 -37.91229 -36.72136 -35.81234 -34.73967 -33.03297 -32.58873 -32.28546 -29.81988 -29.61875 -27.19677 -26.53849 -25.06925 -24.34502 -23.75660 -23.48197 -22.67448 -21.83249 -20.57951 -20.10117 -19.11056 -18.70440 -18.65031 -17.67125 -17.27607 -17.12057 -16.45578 -16.13351 -15.89530 -15.55336 -15.41597 -15.09040 -14.85466 -14.69480 -14.57067 -14.29444 -14.23328 -14.03236 -13.95039 -13.83334 -13.56357 -13.40983 -13.19965 -12.95185 -12.81000 -12.60934 -12.42145 -12.29091 -12.18600 -12.06213 -11.90051 -11.87491 -11.62487 -11.45016 -11.35581 -11.23527 -11.01674 -10.95481 -10.66286 -10.26662 -10.10768 -8.89475 -8.16188 -5.47961 0.31276 1.16474 1.19731 1.29869 1.40993 1.49735 1.87108 2.18006 2.41686 2.66180 3.06133 3.16673 3.20577 3.31181 3.52035 3.66981 3.78819 3.82355 3.92788 3.99200 4.00928 4.21480 4.23967 4.29547 4.40962 4.46748 4.54490 4.57955 4.59428 4.65366 4.65730 4.71578 4.77219 4.80567 4.83767 4.89165 4.91062 4.97756 4.99602 5.10162 5.11233 5.13711 5.19095 5.25726 5.27620 5.39134 5.47675 5.60644 5.86589 6.12631 6.40393 6.92795 7.06039 7.19562 7.63542 8.03681 9.03720 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010681 B = 0.003457 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.955914 B = 8097.447651 C = 9300.446341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.018 3.982 3 C -0.222 4.222 4 C 0.012 3.988 5 C -0.113 4.113 6 C 0.568 3.432 7 O -0.557 6.557 8 N -0.709 5.709 9 C 0.157 3.843 10 H 0.088 0.912 11 C -0.162 4.162 12 C -0.101 4.101 13 H 0.062 0.938 14 C -0.098 4.098 15 C -0.129 4.129 16 C 0.117 3.883 17 N -0.619 5.619 18 C -0.246 4.246 19 H 0.050 0.950 20 C -0.036 4.036 21 N -0.960 5.960 22 Si 0.948 3.052 23 H -0.278 1.278 24 H -0.315 1.315 25 H -0.256 1.256 26 C 0.152 3.848 27 C -0.113 4.113 28 C -0.133 4.133 29 O 0.094 5.906 30 N -0.392 5.392 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.179 0.821 35 H 0.405 0.595 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.050 0.950 43 H 0.035 0.965 44 H 0.043 0.957 45 H 0.260 0.740 46 H 0.043 0.957 47 H 0.046 0.954 48 H 0.119 0.881 49 H 0.121 0.879 50 H 0.124 0.876 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.842 6.251 21.328 22.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.141 4.141 3 C -0.243 4.243 4 C -0.052 4.052 5 C -0.117 4.117 6 C 0.353 3.647 7 O -0.435 6.435 8 N -0.359 5.359 9 C 0.053 3.947 10 H 0.106 0.894 11 C -0.220 4.220 12 C -0.122 4.122 13 H 0.081 0.919 14 C -0.136 4.136 15 C -0.168 4.168 16 C -0.008 4.008 17 N -0.343 5.343 18 C -0.375 4.375 19 H 0.068 0.932 20 C -0.231 4.231 21 N -0.606 5.606 22 Si 0.777 3.223 23 H -0.205 1.205 24 H -0.244 1.244 25 H -0.180 1.180 26 C 0.028 3.972 27 C -0.150 4.150 28 C -0.170 4.170 29 O 0.030 5.970 30 N -0.099 5.099 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.121 0.879 34 H 0.197 0.803 35 H 0.240 0.760 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.068 0.932 43 H 0.053 0.947 44 H 0.061 0.939 45 H 0.069 0.931 46 H 0.061 0.939 47 H 0.065 0.935 48 H 0.137 0.863 49 H 0.139 0.861 50 H 0.142 0.858 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.808 5.582 21.618 22.341 hybrid contribution -0.777 0.299 -1.354 1.590 sum 0.031 5.881 20.263 21.099 Atomic orbital electron populations 1.20337 0.83874 1.05023 1.04298 1.24099 1.00484 0.88263 1.01220 1.22505 0.90782 1.01586 1.09466 1.23002 0.95905 0.83507 1.02799 1.19429 0.88405 0.94478 1.09436 1.19016 0.76015 0.88043 0.81604 1.90696 1.49423 1.37796 1.65620 1.46140 1.67346 1.10365 1.12054 1.20957 0.98882 0.83750 0.91129 0.89386 1.22247 0.96030 1.02104 1.01583 1.21754 0.99539 0.98084 0.92788 0.91932 1.21443 1.03054 0.95137 0.93952 1.21923 0.98127 0.99760 0.96941 1.21442 0.97161 0.86727 0.95477 1.44441 1.86164 1.01266 1.02465 1.18843 1.33857 0.88396 0.96436 0.93226 1.25896 1.00766 0.99185 0.97209 1.69964 1.47500 1.35830 1.07306 0.85892 0.79536 0.79067 0.77786 1.20466 1.24448 1.17999 1.21177 0.96152 0.97882 0.82035 1.23278 0.97449 1.03525 0.90754 1.23361 0.92878 1.00527 1.00236 1.84770 1.21683 1.22464 1.68082 1.73859 0.89570 1.24836 1.21608 0.89552 0.90030 0.87868 0.80332 0.75980 0.92650 0.89950 0.91996 0.90083 0.90601 0.89916 0.93164 0.94668 0.93875 0.93093 0.93889 0.93510 0.86275 0.86055 0.85768 0.86348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.26 10.47 71.24 0.75 -0.51 16 2 C 0.02 0.40 7.33 43.58 0.32 0.72 16 3 C -0.22 -4.80 10.59 22.40 0.24 -4.56 16 4 C 0.01 0.26 6.74 25.04 0.17 0.42 16 5 C -0.11 -2.21 2.44 -53.67 -0.13 -2.34 16 6 C 0.57 13.24 6.74 87.66 0.59 13.83 16 7 O -0.56 -15.76 16.12 -3.04 -0.05 -15.81 16 8 N -0.71 -16.28 4.98 -442.54 -2.20 -18.48 16 9 C 0.16 3.61 2.39 44.99 0.11 3.72 16 10 H 0.09 2.09 7.51 -2.39 -0.02 2.07 16 11 C -0.16 -3.35 8.76 71.98 0.63 -2.72 16 12 C -0.10 -2.77 2.27 -10.72 -0.02 -2.79 16 13 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 14 C -0.10 -2.43 4.89 30.62 0.15 -2.28 16 15 C -0.13 -3.94 6.08 30.67 0.19 -3.75 16 16 C 0.12 4.67 4.18 86.36 0.36 5.03 16 17 N -0.62 -27.61 2.77 -699.08 -1.94 -29.55 16 18 C -0.25 -13.63 10.04 84.03 0.84 -12.78 16 19 H 0.05 3.02 8.06 -2.91 -0.02 3.00 16 20 C -0.04 -2.09 5.25 84.86 0.45 -1.64 16 21 N -0.96 -60.21 13.97 21.65 0.30 -59.91 16 22 Si 0.95 46.05 24.34 68.60 1.67 47.72 16 23 H -0.28 -12.82 6.72 99.48 0.67 -12.16 16 24 H -0.32 -15.74 7.11 99.48 0.71 -15.03 16 25 H -0.26 -11.67 6.40 99.48 0.64 -11.04 16 26 C 0.15 5.27 5.26 86.36 0.45 5.72 16 27 C -0.11 -1.70 9.75 30.62 0.30 -1.41 16 28 C -0.13 -2.02 9.89 30.62 0.30 -1.72 16 29 O 0.09 2.34 10.96 71.58 0.78 3.13 16 30 N -0.39 -10.52 12.07 -49.55 -0.60 -11.12 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.18 3.39 8.06 -2.91 -0.02 3.37 16 35 H 0.40 9.60 7.29 -92.71 -0.68 8.93 16 36 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.08 1.51 6.59 -2.39 -0.02 1.49 16 38 H 0.06 1.35 6.23 -2.39 -0.01 1.33 16 39 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.08 1.71 6.63 -2.39 -0.02 1.69 16 41 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 43 H 0.04 1.35 6.95 -2.39 -0.02 1.34 16 44 H 0.04 1.96 4.50 -2.39 -0.01 1.95 16 45 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 46 H 0.04 1.41 6.06 -2.38 -0.01 1.39 16 47 H 0.05 1.68 6.76 -2.39 -0.02 1.66 16 48 H 0.12 1.83 7.84 -2.39 -0.02 1.81 16 49 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 50 H 0.12 1.69 8.00 -2.38 -0.02 1.67 16 51 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -71.33 398.70 3.82 -67.51 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 0.16 Total: 23.55 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 5.69 Total: -7.05 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -4.44 Total: -119.05 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.74 Total: -12.68 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.67 Total: 47.72 kcal Total: -71.33 3.82 -67.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317208951.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.886 kcal (2) G-P(sol) polarization free energy of solvation -71.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds