Wall clock time and date at job start Wed Apr 1 2020 04:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34873 * 119.09707 * 2 1 4 4 C 1.41674 * 119.33401 * 180.02562 * 3 2 1 5 5 O 1.22088 * 121.06514 * 179.97438 * 4 3 2 6 6 C 1.47094 * 117.86303 * 359.97438 * 4 3 2 7 7 C 1.47299 * 120.88066 * 180.02562 * 6 4 3 8 8 O 1.21612 * 119.99986 * 53.59043 * 7 6 4 9 9 N 1.34776 * 119.99676 * 233.59202 * 7 6 4 10 10 C 1.46927 * 120.63052 * 176.11261 * 9 7 6 11 11 C 1.53190 * 108.77524 * 233.63270 * 10 9 7 12 12 C 1.53043 * 109.30833 * 305.36092 * 11 10 9 13 13 C 1.53003 * 109.45634 * 181.38949 * 12 11 10 14 14 H 1.09002 * 109.46968 * 299.99778 * 13 12 11 15 15 C 1.52999 * 109.47469 * 59.99740 * 13 12 11 16 16 N 1.46500 * 109.47321 * 180.02562 * 13 12 11 17 17 C 1.36933 * 120.00479 * 154.72295 * 16 13 12 18 18 H 1.08004 * 119.99713 * 0.26936 * 17 16 13 19 19 C 1.38812 * 119.99925 * 180.27547 * 17 16 13 20 20 N 1.31615 * 120.00100 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99645 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47111 * 90.00285 * 21 19 17 23 23 H 1.48505 * 109.47140 * 210.00070 * 21 19 17 24 24 H 1.48497 * 109.47680 * 330.00201 * 21 19 17 25 25 C 1.53039 * 109.53842 * 61.36847 * 12 11 10 26 26 C 1.46928 * 120.63442 * 356.13195 * 9 7 6 27 27 C 1.37994 * 118.23979 * 0.26936 * 6 4 3 28 28 N 1.34342 * 120.36896 * 359.47262 * 27 6 4 29 29 C 1.46493 * 118.80782 * 180.28546 * 28 27 6 30 30 H 1.08994 * 109.47130 * 96.23137 * 1 2 3 31 31 H 1.08993 * 109.47244 * 216.23145 * 1 2 3 32 32 H 1.09001 * 109.47113 * 336.23255 * 1 2 3 33 33 H 1.07995 * 120.33323 * 0.02562 * 3 2 1 34 34 H 1.08995 * 109.58778 * 113.83617 * 10 9 7 35 35 H 1.09011 * 109.69677 * 353.48422 * 10 9 7 36 36 H 1.08998 * 109.49717 * 185.41174 * 11 10 9 37 37 H 1.08998 * 109.52686 * 65.32484 * 11 10 9 38 38 H 1.08997 * 109.46256 * 301.35373 * 12 11 10 39 39 H 1.08992 * 109.46991 * 300.00218 * 15 13 12 40 40 H 1.09002 * 109.46994 * 60.00054 * 15 13 12 41 41 H 1.08996 * 109.47016 * 180.02562 * 15 13 12 42 42 H 0.97010 * 119.99428 * 335.00189 * 16 13 12 43 43 H 0.97009 * 119.99624 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.49712 * 58.58811 * 25 12 11 45 45 H 1.09008 * 109.49656 * 178.67953 * 25 12 11 46 46 H 1.08996 * 109.58935 * 246.16073 * 26 9 7 47 47 H 1.09000 * 109.58230 * 6.43904 * 26 9 7 48 48 H 1.07994 * 119.81394 * 179.70410 * 27 6 4 49 49 H 1.09001 * 109.47323 * 263.96197 * 29 28 27 50 50 H 1.08999 * 109.46921 * 23.95578 * 29 28 27 51 51 H 1.08999 * 109.47684 * 143.96146 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1785 0.0000 4 6 3.5796 1.1844 -0.0006 5 8 4.2053 2.2328 -0.0010 6 6 4.2724 -0.1132 -0.0005 7 6 5.7437 -0.1846 -0.0005 8 8 6.3814 0.4103 0.8471 9 7 6.3831 -0.9093 -0.9399 10 6 7.8509 -0.9221 -1.0050 11 6 8.2848 -0.5428 -2.4244 12 6 7.6030 -1.4755 -3.4282 13 6 8.0608 -1.1220 -4.8446 14 1 7.7910 -0.0894 -5.0666 15 6 9.5787 -1.2855 -4.9458 16 7 7.4079 -2.0141 -5.8059 17 6 7.2278 -1.6104 -7.1019 18 1 7.5711 -0.6359 -7.4165 19 6 6.6040 -2.4536 -8.0112 20 7 6.1852 -3.6409 -7.6275 21 14 6.3578 -1.9026 -9.7790 22 1 7.5342 -2.3045 -10.5912 23 1 5.1347 -2.5395 -10.3302 24 1 6.2086 -0.4257 -9.8210 25 6 6.0845 -1.3134 -3.3277 26 6 5.6257 -1.7013 -1.9186 27 6 3.5076 -1.2617 -0.0057 28 7 2.1664 -1.1847 0.0001 29 6 1.3880 -2.4257 0.0007 30 1 -0.3633 -0.1115 -1.0215 31 1 -0.3633 -0.8289 0.6074 32 1 -0.3633 0.9405 0.4142 33 1 1.6136 2.1084 0.0004 34 1 8.2187 -1.9195 -0.7646 35 1 8.2565 -0.2019 -0.2942 36 1 9.3667 -0.6417 -2.5127 37 1 7.9955 0.4876 -2.6307 38 1 7.8733 -2.5078 -3.2063 39 1 10.0641 -0.6214 -4.2307 40 1 9.8484 -2.3180 -4.7238 41 1 9.9048 -1.0332 -5.9548 42 1 7.0995 -2.8894 -5.5231 43 1 5.7496 -4.2303 -8.2631 44 1 5.8156 -0.2757 -3.5252 45 1 5.6004 -1.9606 -4.0591 46 1 5.8120 -2.7623 -1.7528 47 1 4.5609 -1.4959 -1.8092 48 1 3.9899 -2.2280 -0.0106 49 1 1.0991 -2.6739 -1.0205 50 1 1.9923 -3.2333 0.4138 51 1 0.4935 -2.2933 0.6094 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317684787.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:33 Heat of formation + Delta-G solvation = -47.503281 kcal Electronic energy + Delta-G solvation = -31530.811689 eV Core-core repulsion = 27429.905012 eV Total energy + Delta-G solvation = -4100.906677 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.35153 -40.96848 -39.34756 -38.77314 -36.85523 -34.90630 -34.29328 -33.69993 -32.30314 -32.05754 -30.09584 -28.97598 -27.71175 -26.75248 -25.77260 -24.86130 -24.12683 -23.00200 -22.22265 -21.18865 -20.44219 -19.26941 -18.89205 -18.36421 -17.57850 -17.29800 -16.79278 -16.78642 -16.52439 -16.08433 -15.64399 -15.51067 -15.42429 -15.10255 -14.93692 -14.78821 -14.50725 -14.35993 -14.20182 -13.94740 -13.85020 -13.82195 -13.54180 -13.44869 -13.31975 -12.99489 -12.86453 -12.77192 -12.68294 -12.52207 -12.31221 -12.19375 -12.12318 -11.83993 -11.53264 -11.38396 -11.21706 -11.14468 -10.88117 -10.48863 -10.35003 -9.67883 -9.05390 -8.93603 -7.90724 -5.16175 -0.10372 0.28178 1.42454 1.47528 1.48403 1.56149 1.58540 2.05626 2.58023 2.62386 3.26046 3.42423 3.42916 3.59052 3.74903 3.78561 3.80284 3.85944 4.02822 4.16637 4.24973 4.25907 4.38234 4.42076 4.43695 4.47348 4.54726 4.58134 4.72059 4.72608 4.75058 4.79173 4.83265 4.86368 4.87882 4.93306 5.03749 5.05900 5.13595 5.15067 5.22693 5.27365 5.37326 5.48294 5.53926 5.61098 5.68252 5.70635 5.79803 6.32816 6.36367 7.00639 7.14991 7.39833 8.15993 8.42177 9.32248 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010391 B = 0.003031 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2694.004174 B = 9236.143982 C =10798.919887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.191 3.809 3 C -0.309 4.309 4 C 0.385 3.615 5 O -0.586 6.586 6 C -0.346 4.346 7 C 0.580 3.420 8 O -0.584 6.584 9 N -0.603 5.603 10 C 0.115 3.885 11 C -0.120 4.120 12 C -0.077 4.077 13 C 0.172 3.828 14 H 0.023 0.977 15 C -0.157 4.157 16 N -0.728 5.728 17 C -0.235 4.235 18 H 0.063 0.937 19 C -0.068 4.068 20 N -0.963 5.963 21 Si 0.961 3.039 22 H -0.290 1.290 23 H -0.293 1.293 24 H -0.278 1.278 25 C -0.117 4.117 26 C 0.108 3.892 27 C 0.207 3.793 28 N -0.456 5.456 29 C 0.032 3.968 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.098 0.902 33 H 0.154 0.846 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.042 0.958 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.029 0.971 42 H 0.376 0.624 43 H 0.250 0.750 44 H 0.033 0.967 45 H 0.073 0.927 46 H 0.106 0.894 47 H 0.093 0.907 48 H 0.211 0.789 49 H 0.103 0.897 50 H 0.117 0.883 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.108 -4.528 19.542 25.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.082 3.918 3 C -0.333 4.333 4 C 0.281 3.719 5 O -0.477 6.477 6 C -0.356 4.356 7 C 0.370 3.630 8 O -0.465 6.465 9 N -0.335 5.335 10 C -0.007 4.007 11 C -0.158 4.158 12 C -0.096 4.096 13 C 0.064 3.936 14 H 0.042 0.958 15 C -0.216 4.216 16 N -0.368 5.368 17 C -0.367 4.367 18 H 0.081 0.919 19 C -0.260 4.260 20 N -0.614 5.614 21 Si 0.791 3.209 22 H -0.218 1.218 23 H -0.219 1.219 24 H -0.203 1.203 25 C -0.155 4.155 26 C -0.014 4.014 27 C 0.074 3.926 28 N -0.139 5.139 29 C -0.107 4.107 30 H 0.126 0.874 31 H 0.133 0.867 32 H 0.117 0.883 33 H 0.171 0.829 34 H 0.114 0.886 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.061 0.939 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.048 0.952 42 H 0.209 0.791 43 H 0.059 0.941 44 H 0.052 0.948 45 H 0.091 0.909 46 H 0.124 0.876 47 H 0.111 0.889 48 H 0.227 0.773 49 H 0.121 0.879 50 H 0.136 0.864 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.622 -3.765 19.826 24.921 hybrid contribution 0.337 0.634 -1.395 1.569 sum -14.285 -3.130 18.431 23.528 Atomic orbital electron populations 1.21406 0.83949 1.06894 1.06025 1.20845 0.97088 0.83956 0.89911 1.22090 0.94000 0.99479 1.17685 1.18895 0.90459 0.87508 0.75079 1.90734 1.71807 1.35827 1.49313 1.22103 0.93590 0.96390 1.23522 1.17943 0.87165 0.77314 0.80577 1.90713 1.68878 1.46873 1.39993 1.48172 1.07518 1.47152 1.30672 1.21664 0.78810 1.03176 0.97036 1.21944 1.01717 0.98592 0.93596 1.21239 0.94693 1.00047 0.93619 1.20405 0.91680 0.92737 0.88776 0.95849 1.22343 0.97822 1.01235 1.00248 1.42483 1.70247 1.17564 1.06546 1.19504 1.29925 0.99394 0.87865 0.91877 1.25325 1.02401 0.96876 1.01416 1.69769 1.47038 1.09567 1.34989 0.85328 0.76807 0.77423 0.81342 1.21788 1.21904 1.20323 1.21756 0.96498 1.00714 0.96580 1.22114 0.96582 0.96135 0.86532 1.22574 0.82874 0.99529 0.87655 1.43184 1.04939 1.08993 1.56765 1.23125 0.98564 0.82131 1.06832 0.87353 0.86680 0.88326 0.82868 0.88554 0.90866 0.88514 0.93886 0.89941 0.91234 0.93107 0.95210 0.79096 0.94083 0.94760 0.90868 0.87648 0.88916 0.77259 0.87864 0.86422 0.86014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.16 9.34 71.24 0.67 0.50 16 2 C 0.19 2.21 6.64 41.21 0.27 2.48 16 3 C -0.31 -7.07 9.57 22.35 0.21 -6.86 16 4 C 0.39 13.45 6.96 25.44 0.18 13.62 16 5 O -0.59 -27.67 17.43 -5.60 -0.10 -27.77 16 6 C -0.35 -9.85 5.08 -18.63 -0.09 -9.95 16 7 C 0.58 19.92 7.00 86.63 0.61 20.53 16 8 O -0.58 -25.60 16.39 -4.07 -0.07 -25.67 16 9 N -0.60 -16.83 2.97 -822.94 -2.45 -19.28 16 10 C 0.12 3.05 6.42 86.36 0.55 3.61 16 11 C -0.12 -3.35 5.05 30.67 0.15 -3.19 16 12 C -0.08 -2.36 1.79 -10.76 -0.02 -2.38 16 13 C 0.17 6.71 2.47 44.99 0.11 6.82 16 14 H 0.02 1.01 8.08 -2.39 -0.02 0.99 16 15 C -0.16 -5.50 9.15 71.98 0.66 -4.84 16 16 N -0.73 -35.05 4.41 -322.93 -1.42 -36.47 16 17 C -0.23 -12.86 9.93 84.03 0.83 -12.02 16 18 H 0.06 3.46 7.83 -2.91 -0.02 3.43 16 19 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 20 N -0.96 -56.18 13.06 21.65 0.28 -55.90 16 21 Si 0.96 45.69 29.55 68.60 2.03 47.72 16 22 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 23 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 25 C -0.12 -3.62 5.22 30.67 0.16 -3.46 16 26 C 0.11 2.43 5.51 86.36 0.48 2.91 16 27 C 0.21 2.98 7.68 84.25 0.65 3.63 16 28 N -0.46 -3.76 2.97 -532.79 -1.58 -5.35 16 29 C 0.03 -0.10 9.97 127.77 1.27 1.18 16 30 H 0.11 -0.06 8.14 -2.39 -0.02 -0.07 16 31 H 0.11 -0.56 6.02 -2.39 -0.01 -0.57 16 32 H 0.10 0.14 7.97 -2.39 -0.02 0.12 16 33 H 0.15 3.24 8.00 -2.91 -0.02 3.21 16 34 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.07 2.22 7.03 -2.38 -0.02 2.21 16 36 H 0.10 2.34 6.36 -2.39 -0.02 2.32 16 37 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.07 2.01 6.40 -2.39 -0.02 1.99 16 40 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 41 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.38 18.89 7.58 -92.70 -0.70 18.18 16 43 H 0.25 14.21 8.31 -92.70 -0.77 13.44 16 44 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.07 2.55 7.40 -2.38 -0.02 2.53 16 46 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.09 1.80 4.70 -2.39 -0.01 1.78 16 48 H 0.21 1.31 7.16 -2.91 -0.02 1.29 16 49 H 0.10 -0.46 8.14 -2.39 -0.02 -0.48 16 50 H 0.12 -0.76 7.86 -2.39 -0.02 -0.78 16 51 H 0.12 -0.93 5.96 -2.39 -0.01 -0.94 16 Total: -1.00 -95.74 401.30 4.10 -91.64 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.24 Total: 21.81 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 7.16 Total: 9.26 kcal Atomic # 7 Polarization: -111.83 SS G_CDS: -5.17 Total: -117.00 kcal Atomic # 8 Polarization: -53.28 SS G_CDS: -0.16 Total: -53.44 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -95.74 4.10 -91.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317684787.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.139 kcal (2) G-P(sol) polarization free energy of solvation -95.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds