Wall clock time and date at job start Wed Apr 1 2020 04:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30177 * 126.79755 * 2 1 4 4 O 1.20928 * 111.60255 * 179.97438 * 3 2 1 5 5 C 1.34043 * 111.56333 * 359.76174 * 4 3 2 6 6 C 1.50700 * 126.77550 * 180.28856 * 5 4 3 7 7 C 1.35449 * 106.44827 * 0.37659 * 5 4 3 8 8 C 1.50706 * 128.00758 * 179.91088 * 7 5 4 9 9 C 1.52999 * 109.46953 * 269.68487 * 8 7 5 10 10 C 1.50706 * 109.46573 * 179.97438 * 9 8 7 11 11 O 1.21274 * 120.00042 * 359.72068 * 10 9 8 12 12 N 1.34777 * 119.99766 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00266 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.31851 * 35.35959 * 13 12 10 15 15 C 1.53027 * 109.32682 * 154.99970 * 13 12 10 16 16 C 1.53969 * 108.82714 * 175.68114 * 15 13 12 17 17 H 1.08997 * 112.99871 * 168.09229 * 16 15 13 18 18 C 1.55435 * 106.41504 * 293.82214 * 16 15 13 19 19 C 1.55174 * 100.35121 * 73.37808 * 18 16 15 20 20 H 1.08999 * 113.04775 * 162.98764 * 19 18 16 21 21 C 1.52989 * 109.32608 * 275.89453 * 13 12 10 22 22 N 1.47790 * 104.25659 * 40.55251 * 19 18 16 23 23 C 1.36931 * 125.85858 * 153.50952 * 22 19 18 24 24 H 1.08002 * 119.99749 * 0.05016 * 23 22 19 25 25 C 1.38809 * 120.00451 * 180.02562 * 23 22 19 26 26 N 1.31623 * 119.99622 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 120.00483 * 180.02562 * 25 23 22 28 28 H 1.48508 * 109.47146 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.47200 * 119.99562 * 27 25 23 30 30 H 1.48499 * 109.47455 * 240.00109 * 27 25 23 31 31 C 1.47080 * 108.28234 * 333.53250 * 22 19 18 32 32 H 1.09003 * 109.47508 * 270.03163 * 1 2 3 33 33 H 1.08998 * 109.47458 * 30.02958 * 1 2 3 34 34 H 1.08998 * 109.47335 * 150.02515 * 1 2 3 35 35 H 1.08995 * 109.47435 * 270.10713 * 6 5 4 36 36 H 1.09002 * 109.47173 * 30.11169 * 6 5 4 37 37 H 1.09003 * 109.47010 * 150.10777 * 6 5 4 38 38 H 1.09000 * 109.46974 * 149.68236 * 8 7 5 39 39 H 1.09001 * 109.46547 * 29.68326 * 8 7 5 40 40 H 1.09000 * 109.47486 * 60.00062 * 9 8 7 41 41 H 1.09001 * 109.47362 * 299.99339 * 9 8 7 42 42 H 0.96999 * 120.00043 * 0.02562 * 12 10 9 43 43 H 1.08991 * 109.58104 * 295.48595 * 15 13 12 44 44 H 1.09002 * 109.57565 * 55.88317 * 15 13 12 45 45 H 1.09001 * 111.23337 * 191.15454 * 18 16 15 46 46 H 1.08997 * 111.23603 * 315.59892 * 18 16 15 47 47 H 1.08999 * 109.52862 * 304.52422 * 21 13 12 48 48 H 1.09002 * 109.53333 * 64.75696 * 21 13 12 49 49 H 0.97001 * 120.00061 * 180.02562 * 26 25 23 50 50 H 1.09007 * 109.97353 * 241.74290 * 31 22 19 51 51 H 1.09007 * 110.00566 * 120.48609 * 31 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2867 1.0424 0.0000 4 8 3.4537 0.7254 0.0005 5 6 3.6024 -0.6067 0.0061 6 6 4.9021 -1.3694 0.0145 7 6 2.3539 -1.1320 0.0007 8 6 1.9590 -2.5864 0.0017 9 6 1.8253 -3.0795 -1.4404 10 6 1.4310 -4.5341 -1.4393 11 8 1.2776 -5.1199 -0.3886 12 7 1.2539 -5.1851 -2.6060 13 6 0.8712 -6.5992 -2.6050 14 1 0.2031 -6.7914 -1.7655 15 6 0.1486 -6.9292 -3.9130 16 6 -0.1517 -8.4389 -3.9475 17 1 -0.8415 -8.7178 -4.7440 18 6 1.2238 -9.1587 -4.0247 19 6 1.7316 -8.9461 -2.5739 20 1 2.5495 -9.6148 -2.3058 21 6 2.1252 -7.4630 -2.4575 22 7 0.5333 -9.1553 -1.7346 23 6 0.5303 -9.5747 -0.4311 24 1 1.4634 -9.7831 0.0713 25 6 -0.6720 -9.7317 0.2448 26 7 -1.8091 -9.4767 -0.3671 27 14 -0.6761 -10.3032 2.0232 28 1 0.7214 -10.5187 2.4771 29 1 -1.3184 -9.2693 2.8739 30 1 -1.4343 -11.5753 2.1326 31 6 -0.6555 -8.8361 -2.5397 32 1 -0.3634 0.0006 1.0277 33 1 -0.3634 0.8897 -0.5143 34 1 -0.3634 -0.8902 -0.5134 35 1 5.2208 -1.5555 -1.0111 36 1 5.6632 -0.7847 0.5311 37 1 4.7623 -2.3198 0.5296 38 1 1.0050 -2.7035 0.5158 39 1 2.7229 -3.1698 0.5159 40 1 2.7793 -2.9624 -1.9545 41 1 1.0614 -2.4961 -1.9545 42 1 1.3805 -4.7176 -3.4464 43 1 -0.7853 -6.3698 -3.9656 44 1 0.7837 -6.6638 -4.7581 45 1 1.1027 -10.2185 -4.2493 46 1 1.8815 -8.6767 -4.7479 47 1 2.8356 -7.2115 -3.2451 48 1 2.5799 -7.2821 -1.4835 49 1 -2.6492 -9.5860 0.1053 50 1 -1.1976 -8.0043 -2.0898 51 1 -1.3044 -9.7092 -2.6090 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325351188.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:42 Heat of formation + Delta-G solvation = 38.621160 kcal Electronic energy + Delta-G solvation = -31443.992323 eV Core-core repulsion = 27346.820282 eV Total energy + Delta-G solvation = -4097.172041 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.09288 -40.09175 -38.75394 -36.03660 -34.50764 -33.96523 -32.80955 -31.92818 -30.67176 -29.63528 -28.87368 -28.40864 -27.77140 -25.30290 -25.14115 -23.11373 -21.98048 -21.17797 -20.27951 -19.99658 -19.41494 -18.61358 -17.84581 -17.22258 -17.01300 -16.54846 -15.87399 -15.55733 -14.67426 -14.52848 -14.42583 -14.01831 -13.92526 -13.69849 -13.51430 -13.38246 -13.19685 -13.00285 -12.91080 -12.69337 -12.62366 -12.45517 -12.13311 -11.96671 -11.81143 -11.74481 -11.55822 -11.43937 -11.21918 -10.92240 -10.71103 -10.66496 -10.51420 -10.02393 -9.92809 -9.86502 -9.73081 -9.66322 -9.46592 -9.34225 -9.16742 -8.55853 -8.51918 -6.75997 -5.62737 -2.94814 1.26212 1.99887 2.91200 2.96597 3.47076 3.48843 3.53196 3.54899 4.00286 4.24761 4.58014 4.60645 4.72674 4.86603 5.01274 5.05222 5.12538 5.17203 5.23313 5.25175 5.28152 5.33717 5.39344 5.46550 5.50673 5.56048 5.60670 5.64674 5.70701 5.85524 5.89584 5.90030 5.93619 6.04926 6.08759 6.10088 6.13006 6.14266 6.23711 6.57545 6.62714 6.70697 6.89677 6.90671 6.99515 7.09821 7.62527 7.64910 7.85380 7.90066 8.10151 8.32460 8.60075 9.30309 9.90725 10.56530 11.49313 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012200 B = 0.002714 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.474653 B =10312.994523 C =11289.587247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.024 3.976 3 N -0.370 5.370 4 O 0.094 5.906 5 C -0.032 4.032 6 C -0.075 4.075 7 C -0.195 4.195 8 C -0.026 4.026 9 C -0.134 4.134 10 C 0.504 3.496 11 O -0.523 6.523 12 N -0.729 5.729 13 C 0.146 3.854 14 H 0.115 0.885 15 C -0.111 4.111 16 C -0.119 4.119 17 H 0.081 0.919 18 C -0.127 4.127 19 C 0.157 3.843 20 H 0.065 0.935 21 C -0.135 4.135 22 N -0.595 5.595 23 C -0.219 4.219 24 H 0.076 0.924 25 C -0.007 4.007 26 N -0.923 5.923 27 Si 0.909 3.091 28 H -0.281 1.281 29 H -0.291 1.291 30 H -0.293 1.293 31 C 0.180 3.820 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.390 0.610 43 H 0.059 0.941 44 H 0.053 0.947 45 H 0.062 0.938 46 H 0.059 0.941 47 H 0.042 0.958 48 H 0.058 0.942 49 H 0.250 0.750 50 H 0.046 0.954 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.546 15.983 -7.439 20.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.135 4.135 3 N -0.077 5.077 4 O 0.029 5.971 5 C -0.095 4.095 6 C -0.132 4.132 7 C -0.199 4.199 8 C -0.065 4.065 9 C -0.174 4.174 10 C 0.289 3.711 11 O -0.398 6.398 12 N -0.380 5.380 13 C 0.043 3.957 14 H 0.132 0.868 15 C -0.149 4.149 16 C -0.139 4.139 17 H 0.100 0.900 18 C -0.166 4.166 19 C 0.048 3.952 20 H 0.083 0.917 21 C -0.176 4.176 22 N -0.319 5.319 23 C -0.347 4.347 24 H 0.094 0.906 25 C -0.203 4.203 26 N -0.571 5.571 27 Si 0.740 3.260 28 H -0.206 1.206 29 H -0.218 1.218 30 H -0.220 1.220 31 C 0.056 3.944 32 H 0.100 0.900 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.222 0.778 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.060 0.940 48 H 0.077 0.923 49 H 0.060 0.940 50 H 0.064 0.936 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.043 16.824 -6.459 20.163 hybrid contribution -0.105 -0.661 0.490 0.829 sum 8.938 16.163 -5.969 19.411 Atomic orbital electron populations 1.20195 0.85935 1.03815 1.03612 1.23495 0.98968 0.88503 1.02508 1.73834 0.89317 1.23993 1.20514 1.84787 1.21637 1.22609 1.68060 1.24281 0.98322 0.83720 1.03204 1.20369 0.89947 0.98796 1.04135 1.21038 0.91540 0.97659 1.09658 1.19621 1.03899 0.87052 0.95892 1.21627 1.03393 0.93711 0.98660 1.20513 0.77712 0.88580 0.84319 1.90815 1.49444 1.68663 1.30886 1.46251 1.71077 1.12838 1.07796 1.21188 0.97133 0.77482 0.99940 0.86769 1.21955 0.99408 0.97423 0.96148 1.22839 0.97012 0.93306 1.00743 0.90034 1.22967 0.96475 0.99846 0.97273 1.21517 0.91273 0.92583 0.89820 0.91742 1.22600 0.96335 0.98245 1.00401 1.44613 0.99661 1.78357 1.09291 1.19051 0.92815 1.36937 0.85903 0.90584 1.24728 0.95378 1.02030 0.98184 1.69952 0.96534 1.55206 1.35425 0.86081 0.77260 0.77750 0.84925 1.20592 1.21850 1.21996 1.21304 0.88968 0.99360 0.84809 0.90037 0.90592 0.89792 0.89385 0.89894 0.88757 0.89497 0.89582 0.89254 0.89249 0.77786 0.92247 0.92882 0.91896 0.92273 0.93958 0.92301 0.94005 0.93609 0.93805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.39 36.00 0.37 -0.32 16 2 C 0.02 0.27 7.33 -82.10 -0.60 -0.33 16 3 N -0.37 -4.69 12.07 33.42 0.40 -4.29 16 4 O 0.09 1.08 11.20 17.17 0.19 1.27 16 5 C -0.03 -0.31 7.49 -35.30 -0.26 -0.57 16 6 C -0.08 -0.46 10.30 36.01 0.37 -0.09 16 7 C -0.20 -2.08 5.58 -104.42 -0.58 -2.66 16 8 C -0.03 -0.29 4.83 -27.88 -0.13 -0.43 16 9 C -0.13 -1.37 5.68 -27.88 -0.16 -1.53 16 10 C 0.50 7.56 7.78 -10.98 -0.09 7.48 16 11 O -0.52 -10.74 15.65 5.56 0.09 -10.66 16 12 N -0.73 -10.16 5.07 -53.80 -0.27 -10.43 16 13 C 0.15 2.57 2.07 -67.92 -0.14 2.43 16 14 H 0.11 2.70 5.39 -51.93 -0.28 2.42 16 15 C -0.11 -1.70 4.95 -26.21 -0.13 -1.83 16 16 C -0.12 -2.09 4.33 -87.92 -0.38 -2.47 16 17 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 18 C -0.13 -2.13 6.18 -24.29 -0.15 -2.28 16 19 C 0.16 3.12 4.30 -65.61 -0.28 2.84 16 20 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 21 C -0.13 -2.44 5.27 -26.28 -0.14 -2.58 16 22 N -0.59 -14.73 2.43 -161.37 -0.39 -15.12 16 23 C -0.22 -6.13 10.29 -15.06 -0.16 -6.28 16 24 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 25 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 26 N -0.92 -27.33 10.35 55.49 0.57 -26.75 16 27 Si 0.91 22.90 29.55 -169.99 -5.02 17.87 16 28 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 30 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 31 C 0.18 4.24 4.10 -2.83 -0.01 4.22 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.56 7.43 -51.93 -0.39 0.18 16 38 H 0.09 1.07 8.10 -51.93 -0.42 0.65 16 39 H 0.09 0.99 7.39 -51.93 -0.38 0.60 16 40 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.39 3.97 8.60 -40.82 -0.35 3.62 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.05 0.67 7.97 -51.93 -0.41 0.26 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.06 0.83 7.75 -51.93 -0.40 0.43 16 47 H 0.04 0.65 8.00 -51.93 -0.42 0.23 16 48 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 49 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 50 H 0.05 1.21 6.15 -51.93 -0.32 0.89 16 51 H 0.04 1.16 7.40 -51.93 -0.38 0.78 16 LS Contribution 402.03 15.07 6.06 6.06 Total: -1.00 -34.34 402.03 -9.31 -43.65 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -8.38 Total: 3.09 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -2.57 Total: -4.70 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 0.31 Total: -56.59 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.28 Total: -9.38 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.34 -9.31 -43.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325351188.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.274 kcal (2) G-P(sol) polarization free energy of solvation -34.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds