Wall clock time and date at job start Wed Apr 1 2020 04:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30177 * 126.79755 * 2 1 4 4 O 1.20928 * 111.60255 * 179.97438 * 3 2 1 5 5 C 1.34043 * 111.56333 * 359.76174 * 4 3 2 6 6 C 1.50700 * 126.77550 * 180.28856 * 5 4 3 7 7 C 1.35449 * 106.44827 * 0.37659 * 5 4 3 8 8 C 1.50706 * 128.00758 * 179.91088 * 7 5 4 9 9 C 1.52999 * 109.46953 * 269.68487 * 8 7 5 10 10 C 1.50706 * 109.46573 * 179.97438 * 9 8 7 11 11 O 1.21274 * 120.00042 * 359.72068 * 10 9 8 12 12 N 1.34777 * 119.99766 * 179.97438 * 10 9 8 13 13 C 1.46496 * 120.00266 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.31851 * 35.35959 * 13 12 10 15 15 C 1.53027 * 109.32682 * 154.99970 * 13 12 10 16 16 C 1.53969 * 108.82714 * 175.68114 * 15 13 12 17 17 H 1.08997 * 112.99871 * 168.09229 * 16 15 13 18 18 C 1.55435 * 106.41504 * 293.82214 * 16 15 13 19 19 C 1.55174 * 100.35121 * 73.37808 * 18 16 15 20 20 H 1.08999 * 113.04775 * 162.98764 * 19 18 16 21 21 C 1.52989 * 109.32608 * 275.89453 * 13 12 10 22 22 N 1.47790 * 104.25659 * 40.55251 * 19 18 16 23 23 C 1.36931 * 125.85858 * 153.50952 * 22 19 18 24 24 H 1.08002 * 119.99749 * 0.05016 * 23 22 19 25 25 C 1.38809 * 120.00451 * 180.02562 * 23 22 19 26 26 N 1.31623 * 119.99622 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 120.00483 * 180.02562 * 25 23 22 28 28 H 1.48508 * 109.47146 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.47200 * 119.99562 * 27 25 23 30 30 H 1.48499 * 109.47455 * 240.00109 * 27 25 23 31 31 C 1.47080 * 108.28234 * 333.53250 * 22 19 18 32 32 H 1.09003 * 109.47508 * 270.03163 * 1 2 3 33 33 H 1.08998 * 109.47458 * 30.02958 * 1 2 3 34 34 H 1.08998 * 109.47335 * 150.02515 * 1 2 3 35 35 H 1.08995 * 109.47435 * 270.10713 * 6 5 4 36 36 H 1.09002 * 109.47173 * 30.11169 * 6 5 4 37 37 H 1.09003 * 109.47010 * 150.10777 * 6 5 4 38 38 H 1.09000 * 109.46974 * 149.68236 * 8 7 5 39 39 H 1.09001 * 109.46547 * 29.68326 * 8 7 5 40 40 H 1.09000 * 109.47486 * 60.00062 * 9 8 7 41 41 H 1.09001 * 109.47362 * 299.99339 * 9 8 7 42 42 H 0.96999 * 120.00043 * 0.02562 * 12 10 9 43 43 H 1.08991 * 109.58104 * 295.48595 * 15 13 12 44 44 H 1.09002 * 109.57565 * 55.88317 * 15 13 12 45 45 H 1.09001 * 111.23337 * 191.15454 * 18 16 15 46 46 H 1.08997 * 111.23603 * 315.59892 * 18 16 15 47 47 H 1.08999 * 109.52862 * 304.52422 * 21 13 12 48 48 H 1.09002 * 109.53333 * 64.75696 * 21 13 12 49 49 H 0.97001 * 120.00061 * 180.02562 * 26 25 23 50 50 H 1.09007 * 109.97353 * 241.74290 * 31 22 19 51 51 H 1.09007 * 110.00566 * 120.48609 * 31 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2867 1.0424 0.0000 4 8 3.4537 0.7254 0.0005 5 6 3.6024 -0.6067 0.0061 6 6 4.9021 -1.3694 0.0145 7 6 2.3539 -1.1320 0.0007 8 6 1.9590 -2.5864 0.0017 9 6 1.8253 -3.0795 -1.4404 10 6 1.4310 -4.5341 -1.4393 11 8 1.2776 -5.1199 -0.3886 12 7 1.2539 -5.1851 -2.6060 13 6 0.8712 -6.5992 -2.6050 14 1 0.2031 -6.7914 -1.7655 15 6 0.1486 -6.9292 -3.9130 16 6 -0.1517 -8.4389 -3.9475 17 1 -0.8415 -8.7178 -4.7440 18 6 1.2238 -9.1587 -4.0247 19 6 1.7316 -8.9461 -2.5739 20 1 2.5495 -9.6148 -2.3058 21 6 2.1252 -7.4630 -2.4575 22 7 0.5333 -9.1553 -1.7346 23 6 0.5303 -9.5747 -0.4311 24 1 1.4634 -9.7831 0.0713 25 6 -0.6720 -9.7317 0.2448 26 7 -1.8091 -9.4767 -0.3671 27 14 -0.6761 -10.3032 2.0232 28 1 0.7214 -10.5187 2.4771 29 1 -1.3184 -9.2693 2.8739 30 1 -1.4343 -11.5753 2.1326 31 6 -0.6555 -8.8361 -2.5397 32 1 -0.3634 0.0006 1.0277 33 1 -0.3634 0.8897 -0.5143 34 1 -0.3634 -0.8902 -0.5134 35 1 5.2208 -1.5555 -1.0111 36 1 5.6632 -0.7847 0.5311 37 1 4.7623 -2.3198 0.5296 38 1 1.0050 -2.7035 0.5158 39 1 2.7229 -3.1698 0.5159 40 1 2.7793 -2.9624 -1.9545 41 1 1.0614 -2.4961 -1.9545 42 1 1.3805 -4.7176 -3.4464 43 1 -0.7853 -6.3698 -3.9656 44 1 0.7837 -6.6638 -4.7581 45 1 1.1027 -10.2185 -4.2493 46 1 1.8815 -8.6767 -4.7479 47 1 2.8356 -7.2115 -3.2451 48 1 2.5799 -7.2821 -1.4835 49 1 -2.6492 -9.5860 0.1053 50 1 -1.1976 -8.0043 -2.0898 51 1 -1.3044 -9.7092 -2.6090 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325351188.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:41 Heat of formation + Delta-G solvation = 16.633393 kcal Electronic energy + Delta-G solvation = -31444.945784 eV Core-core repulsion = 27346.820282 eV Total energy + Delta-G solvation = -4098.125502 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.92985 -41.50522 -40.12777 -36.91789 -36.00906 -34.74790 -34.65149 -32.85040 -32.31738 -31.20154 -29.89723 -29.61417 -28.52952 -27.18637 -26.09185 -24.89887 -23.14123 -22.20858 -21.37654 -21.11891 -20.96723 -20.05201 -18.91615 -18.70943 -18.16852 -17.62839 -17.32822 -16.64920 -16.45564 -16.07540 -15.49472 -15.29920 -15.13231 -14.98792 -14.38777 -14.33988 -14.15611 -13.97744 -13.90250 -13.70837 -13.67510 -13.51642 -13.40146 -13.29628 -13.23514 -13.15452 -12.99284 -12.93359 -12.62108 -12.48941 -12.27507 -12.09477 -11.85618 -11.75762 -11.62085 -11.35211 -11.13630 -10.96497 -10.86344 -10.67562 -10.63828 -10.06257 -9.88454 -8.80042 -7.81402 -5.12589 0.48138 1.16649 1.39855 1.42900 1.51086 1.78877 2.16472 2.36801 2.50240 3.21119 3.37365 3.51943 3.67987 3.74107 3.85744 3.86152 3.97921 4.01412 4.14029 4.31791 4.32688 4.40836 4.42679 4.48291 4.57099 4.58409 4.60334 4.69682 4.70594 4.70771 4.72098 4.79882 4.83707 4.87546 4.90108 5.03811 5.07841 5.13640 5.15468 5.22978 5.32975 5.34934 5.38304 5.50372 5.52212 5.54264 5.71259 5.80039 5.87536 6.25573 6.74802 7.16496 7.29440 7.49010 7.85386 8.49219 9.28747 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012200 B = 0.002714 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.474653 B =10312.994523 C =11289.587247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.017 3.983 3 N -0.397 5.397 4 O 0.084 5.916 5 C -0.020 4.020 6 C -0.077 4.077 7 C -0.209 4.209 8 C -0.019 4.019 9 C -0.117 4.117 10 C 0.500 3.500 11 O -0.588 6.588 12 N -0.713 5.713 13 C 0.152 3.848 14 H 0.045 0.955 15 C -0.100 4.100 16 C -0.108 4.108 17 H 0.107 0.893 18 C -0.110 4.110 19 C 0.139 3.861 20 H 0.061 0.939 21 C -0.121 4.121 22 N -0.614 5.614 23 C -0.224 4.224 24 H 0.072 0.928 25 C -0.068 4.068 26 N -0.949 5.949 27 Si 0.965 3.035 28 H -0.269 1.269 29 H -0.300 1.300 30 H -0.289 1.289 31 C 0.189 3.811 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.123 0.877 41 H 0.111 0.889 42 H 0.415 0.585 43 H 0.062 0.938 44 H 0.104 0.896 45 H 0.060 0.940 46 H 0.108 0.892 47 H 0.087 0.913 48 H 0.020 0.980 49 H 0.242 0.758 50 H 0.004 0.996 51 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.920 17.255 -10.582 23.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.142 4.142 3 N -0.106 5.106 4 O 0.022 5.978 5 C -0.083 4.083 6 C -0.134 4.134 7 C -0.213 4.213 8 C -0.058 4.058 9 C -0.157 4.157 10 C 0.287 3.713 11 O -0.468 6.468 12 N -0.365 5.365 13 C 0.047 3.953 14 H 0.063 0.937 15 C -0.138 4.138 16 C -0.128 4.128 17 H 0.126 0.874 18 C -0.148 4.148 19 C 0.032 3.968 20 H 0.080 0.920 21 C -0.162 4.162 22 N -0.338 5.338 23 C -0.353 4.353 24 H 0.089 0.911 25 C -0.260 4.260 26 N -0.599 5.599 27 Si 0.795 3.205 28 H -0.193 1.193 29 H -0.228 1.228 30 H -0.215 1.215 31 C 0.064 3.936 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.128 0.872 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.141 0.859 41 H 0.130 0.870 42 H 0.252 0.748 43 H 0.081 0.919 44 H 0.123 0.877 45 H 0.079 0.921 46 H 0.126 0.874 47 H 0.106 0.894 48 H 0.039 0.961 49 H 0.051 0.949 50 H 0.022 0.978 51 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges 11.478 18.122 -9.671 23.530 hybrid contribution -0.778 -1.054 1.508 1.998 sum 10.699 17.068 -8.163 21.735 Atomic orbital electron populations 1.20284 0.84782 1.04557 1.04051 1.23890 0.99955 0.88541 1.01794 1.73831 0.89842 1.24818 1.22129 1.84758 1.21317 1.23484 1.68251 1.24881 0.99372 0.83117 1.00945 1.20586 0.88545 0.98478 1.05757 1.20960 0.92009 0.97049 1.11254 1.19459 1.02602 0.87361 0.96332 1.21585 1.05583 0.89880 0.98642 1.21377 0.76196 0.90245 0.83447 1.90802 1.52251 1.70441 1.33300 1.46006 1.70104 1.11459 1.08891 1.20781 0.95902 0.79570 0.99007 0.93718 1.21892 1.00320 0.95484 0.96132 1.22798 0.97808 0.95256 0.96920 0.87450 1.22925 0.96107 1.00293 0.95449 1.21890 0.89651 0.93810 0.91416 0.92048 1.22411 0.97095 0.96798 0.99887 1.44842 1.02083 1.77985 1.08891 1.19338 0.92514 1.35576 0.87908 0.91059 1.25469 0.95365 1.03394 1.01790 1.70173 0.96590 1.56793 1.36369 0.85184 0.77578 0.76961 0.80777 1.19349 1.22767 1.21546 1.21041 0.88210 0.95905 0.88438 0.89761 0.89796 0.89051 0.87193 0.88357 0.88565 0.91565 0.90382 0.85940 0.87034 0.74801 0.91903 0.87728 0.92140 0.87409 0.89430 0.96097 0.94888 0.97815 0.98237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 10.39 71.23 0.74 -0.63 16 2 C 0.02 0.37 7.33 43.57 0.32 0.69 16 3 N -0.40 -9.79 12.07 -49.55 -0.60 -10.38 16 4 O 0.08 1.84 11.20 71.60 0.80 2.64 16 5 C -0.02 -0.35 7.49 25.04 0.19 -0.16 16 6 C -0.08 -0.74 10.30 71.24 0.73 0.00 16 7 C -0.21 -4.19 5.58 -19.73 -0.11 -4.30 16 8 C -0.02 -0.41 4.83 29.85 0.14 -0.27 16 9 C -0.12 -2.12 5.68 29.85 0.17 -1.95 16 10 C 0.50 14.62 7.78 87.66 0.68 15.30 16 11 O -0.59 -25.28 15.65 -3.01 -0.05 -25.33 16 12 N -0.71 -18.14 5.07 -442.52 -2.24 -20.38 16 13 C 0.15 5.21 2.07 45.00 0.09 5.30 16 14 H 0.04 2.22 5.39 -2.39 -0.01 2.21 16 15 C -0.10 -2.71 4.95 30.93 0.15 -2.56 16 16 C -0.11 -3.54 4.33 -9.05 -0.04 -3.58 16 17 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 18 C -0.11 -3.26 6.18 32.18 0.20 -3.06 16 19 C 0.14 5.41 4.30 45.79 0.20 5.60 16 20 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 21 C -0.12 -4.18 5.27 30.89 0.16 -4.01 16 22 N -0.61 -31.51 2.43 -664.45 -1.61 -33.12 16 23 C -0.22 -13.15 10.29 84.03 0.87 -12.28 16 24 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 25 C -0.07 -4.08 5.49 84.86 0.47 -3.61 16 26 N -0.95 -59.77 10.35 21.65 0.22 -59.54 16 27 Si 0.97 49.24 29.55 68.60 2.03 51.27 16 28 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 29 H -0.30 -15.59 7.11 99.48 0.71 -14.88 16 30 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 31 C 0.19 9.25 4.10 86.85 0.36 9.61 16 32 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 34 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.11 0.63 8.14 -2.39 -0.02 0.62 16 36 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.10 0.94 7.43 -2.39 -0.02 0.92 16 38 H 0.07 1.69 8.10 -2.39 -0.02 1.67 16 39 H 0.08 1.79 7.39 -2.39 -0.02 1.77 16 40 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.41 6.46 8.60 -92.71 -0.80 5.66 16 43 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.10 1.87 7.97 -2.39 -0.02 1.85 16 45 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.11 2.26 7.75 -2.39 -0.02 2.24 16 47 H 0.09 2.24 8.00 -2.39 -0.02 2.22 16 48 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.24 14.90 8.31 -92.71 -0.77 14.13 16 50 H 0.00 0.21 6.15 -2.38 -0.01 0.20 16 51 H 0.00 -0.04 7.40 -2.38 -0.02 -0.05 16 Total: -1.00 -84.72 402.03 4.01 -80.71 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.14 Total: 14.07 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 5.32 Total: 0.08 kcal Atomic # 7 Polarization: -119.20 SS G_CDS: -4.23 Total: -123.43 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: 0.75 Total: -22.69 kcal Atomic # 14 Polarization: 49.24 SS G_CDS: 2.03 Total: 51.27 kcal Total: -84.72 4.01 -80.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325351188.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.339 kcal (2) G-P(sol) polarization free energy of solvation -84.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds