Wall clock time and date at job start Wed Apr 1 2020 04:39:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 N 1.30177 * 126.79755 * 2 1
4 4 O 1.20928 * 111.60255 * 179.97438 * 3 2 1
5 5 C 1.34043 * 111.56333 * 359.76174 * 4 3 2
6 6 C 1.50700 * 126.77550 * 180.28856 * 5 4 3
7 7 C 1.35449 * 106.44827 * 0.37659 * 5 4 3
8 8 C 1.50706 * 128.00758 * 179.91088 * 7 5 4
9 9 C 1.52999 * 109.46953 * 269.68487 * 8 7 5
10 10 C 1.50706 * 109.46573 * 179.97438 * 9 8 7
11 11 O 1.21274 * 120.00042 * 359.72068 * 10 9 8
12 12 N 1.34777 * 119.99766 * 179.97438 * 10 9 8
13 13 C 1.46496 * 120.00266 * 179.97438 * 12 10 9
14 14 H 1.09000 * 109.31851 * 35.35959 * 13 12 10
15 15 C 1.53027 * 109.32682 * 154.99970 * 13 12 10
16 16 C 1.53969 * 108.82714 * 175.68114 * 15 13 12
17 17 H 1.08997 * 112.99871 * 168.09229 * 16 15 13
18 18 C 1.55435 * 106.41504 * 293.82214 * 16 15 13
19 19 C 1.55174 * 100.35121 * 73.37808 * 18 16 15
20 20 H 1.08999 * 113.04775 * 162.98764 * 19 18 16
21 21 C 1.52989 * 109.32608 * 275.89453 * 13 12 10
22 22 N 1.47790 * 104.25659 * 40.55251 * 19 18 16
23 23 C 1.36931 * 125.85858 * 153.50952 * 22 19 18
24 24 H 1.08002 * 119.99749 * 0.05016 * 23 22 19
25 25 C 1.38809 * 120.00451 * 180.02562 * 23 22 19
26 26 N 1.31623 * 119.99622 * 359.97438 * 25 23 22
27 27 Si 1.86795 * 120.00483 * 180.02562 * 25 23 22
28 28 H 1.48508 * 109.47146 * 0.02562 * 27 25 23
29 29 H 1.48499 * 109.47200 * 119.99562 * 27 25 23
30 30 H 1.48499 * 109.47455 * 240.00109 * 27 25 23
31 31 C 1.47080 * 108.28234 * 333.53250 * 22 19 18
32 32 H 1.09003 * 109.47508 * 270.03163 * 1 2 3
33 33 H 1.08998 * 109.47458 * 30.02958 * 1 2 3
34 34 H 1.08998 * 109.47335 * 150.02515 * 1 2 3
35 35 H 1.08995 * 109.47435 * 270.10713 * 6 5 4
36 36 H 1.09002 * 109.47173 * 30.11169 * 6 5 4
37 37 H 1.09003 * 109.47010 * 150.10777 * 6 5 4
38 38 H 1.09000 * 109.46974 * 149.68236 * 8 7 5
39 39 H 1.09001 * 109.46547 * 29.68326 * 8 7 5
40 40 H 1.09000 * 109.47486 * 60.00062 * 9 8 7
41 41 H 1.09001 * 109.47362 * 299.99339 * 9 8 7
42 42 H 0.96999 * 120.00043 * 0.02562 * 12 10 9
43 43 H 1.08991 * 109.58104 * 295.48595 * 15 13 12
44 44 H 1.09002 * 109.57565 * 55.88317 * 15 13 12
45 45 H 1.09001 * 111.23337 * 191.15454 * 18 16 15
46 46 H 1.08997 * 111.23603 * 315.59892 * 18 16 15
47 47 H 1.08999 * 109.52862 * 304.52422 * 21 13 12
48 48 H 1.09002 * 109.53333 * 64.75696 * 21 13 12
49 49 H 0.97001 * 120.00061 * 180.02562 * 26 25 23
50 50 H 1.09007 * 109.97353 * 241.74290 * 31 22 19
51 51 H 1.09007 * 110.00566 * 120.48609 * 31 22 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2867 1.0424 0.0000
4 8 3.4537 0.7254 0.0005
5 6 3.6024 -0.6067 0.0061
6 6 4.9021 -1.3694 0.0145
7 6 2.3539 -1.1320 0.0007
8 6 1.9590 -2.5864 0.0017
9 6 1.8253 -3.0795 -1.4404
10 6 1.4310 -4.5341 -1.4393
11 8 1.2776 -5.1199 -0.3886
12 7 1.2539 -5.1851 -2.6060
13 6 0.8712 -6.5992 -2.6050
14 1 0.2031 -6.7914 -1.7655
15 6 0.1486 -6.9292 -3.9130
16 6 -0.1517 -8.4389 -3.9475
17 1 -0.8415 -8.7178 -4.7440
18 6 1.2238 -9.1587 -4.0247
19 6 1.7316 -8.9461 -2.5739
20 1 2.5495 -9.6148 -2.3058
21 6 2.1252 -7.4630 -2.4575
22 7 0.5333 -9.1553 -1.7346
23 6 0.5303 -9.5747 -0.4311
24 1 1.4634 -9.7831 0.0713
25 6 -0.6720 -9.7317 0.2448
26 7 -1.8091 -9.4767 -0.3671
27 14 -0.6761 -10.3032 2.0232
28 1 0.7214 -10.5187 2.4771
29 1 -1.3184 -9.2693 2.8739
30 1 -1.4343 -11.5753 2.1326
31 6 -0.6555 -8.8361 -2.5397
32 1 -0.3634 0.0006 1.0277
33 1 -0.3634 0.8897 -0.5143
34 1 -0.3634 -0.8902 -0.5134
35 1 5.2208 -1.5555 -1.0111
36 1 5.6632 -0.7847 0.5311
37 1 4.7623 -2.3198 0.5296
38 1 1.0050 -2.7035 0.5158
39 1 2.7229 -3.1698 0.5159
40 1 2.7793 -2.9624 -1.9545
41 1 1.0614 -2.4961 -1.9545
42 1 1.3805 -4.7176 -3.4464
43 1 -0.7853 -6.3698 -3.9656
44 1 0.7837 -6.6638 -4.7581
45 1 1.1027 -10.2185 -4.2493
46 1 1.8815 -8.6767 -4.7479
47 1 2.8356 -7.2115 -3.2451
48 1 2.5799 -7.2821 -1.4835
49 1 -2.6492 -9.5860 0.1053
50 1 -1.1976 -8.0043 -2.0898
51 1 -1.3044 -9.7092 -2.6090
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001325351188.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:39:41
Heat of formation + Delta-G solvation = 16.633393 kcal
Electronic energy + Delta-G solvation = -31444.945784 eV
Core-core repulsion = 27346.820282 eV
Total energy + Delta-G solvation = -4098.125502 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-45.92985 -41.50522 -40.12777 -36.91789 -36.00906 -34.74790 -34.65149 -32.85040
-32.31738 -31.20154 -29.89723 -29.61417 -28.52952 -27.18637 -26.09185 -24.89887
-23.14123 -22.20858 -21.37654 -21.11891 -20.96723 -20.05201 -18.91615 -18.70943
-18.16852 -17.62839 -17.32822 -16.64920 -16.45564 -16.07540 -15.49472 -15.29920
-15.13231 -14.98792 -14.38777 -14.33988 -14.15611 -13.97744 -13.90250 -13.70837
-13.67510 -13.51642 -13.40146 -13.29628 -13.23514 -13.15452 -12.99284 -12.93359
-12.62108 -12.48941 -12.27507 -12.09477 -11.85618 -11.75762 -11.62085 -11.35211
-11.13630 -10.96497 -10.86344 -10.67562 -10.63828 -10.06257 -9.88454 -8.80042
-7.81402 -5.12589 0.48138 1.16649 1.39855 1.42900 1.51086 1.78877
2.16472 2.36801 2.50240 3.21119 3.37365 3.51943 3.67987 3.74107
3.85744 3.86152 3.97921 4.01412 4.14029 4.31791 4.32688 4.40836
4.42679 4.48291 4.57099 4.58409 4.60334 4.69682 4.70594 4.70771
4.72098 4.79882 4.83707 4.87546 4.90108 5.03811 5.07841 5.13640
5.15468 5.22978 5.32975 5.34934 5.38304 5.50372 5.52212 5.54264
5.71259 5.80039 5.87536 6.25573 6.74802 7.16496 7.29440 7.49010
7.85386 8.49219 9.28747
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012200 B = 0.002714 C = 0.002480
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2294.474653 B =10312.994523 C =11289.587247
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 C 0.017 3.983
3 N -0.397 5.397
4 O 0.084 5.916
5 C -0.020 4.020
6 C -0.077 4.077
7 C -0.209 4.209
8 C -0.019 4.019
9 C -0.117 4.117
10 C 0.500 3.500
11 O -0.588 6.588
12 N -0.713 5.713
13 C 0.152 3.848
14 H 0.045 0.955
15 C -0.100 4.100
16 C -0.108 4.108
17 H 0.107 0.893
18 C -0.110 4.110
19 C 0.139 3.861
20 H 0.061 0.939
21 C -0.121 4.121
22 N -0.614 5.614
23 C -0.224 4.224
24 H 0.072 0.928
25 C -0.068 4.068
26 N -0.949 5.949
27 Si 0.965 3.035
28 H -0.269 1.269
29 H -0.300 1.300
30 H -0.289 1.289
31 C 0.189 3.811
32 H 0.084 0.916
33 H 0.083 0.917
34 H 0.091 0.909
35 H 0.110 0.890
36 H 0.098 0.902
37 H 0.096 0.904
38 H 0.066 0.934
39 H 0.078 0.922
40 H 0.123 0.877
41 H 0.111 0.889
42 H 0.415 0.585
43 H 0.062 0.938
44 H 0.104 0.896
45 H 0.060 0.940
46 H 0.108 0.892
47 H 0.087 0.913
48 H 0.020 0.980
49 H 0.242 0.758
50 H 0.004 0.996
51 H -0.001 1.001
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.920 17.255 -10.582 23.491
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.142 4.142
3 N -0.106 5.106
4 O 0.022 5.978
5 C -0.083 4.083
6 C -0.134 4.134
7 C -0.213 4.213
8 C -0.058 4.058
9 C -0.157 4.157
10 C 0.287 3.713
11 O -0.468 6.468
12 N -0.365 5.365
13 C 0.047 3.953
14 H 0.063 0.937
15 C -0.138 4.138
16 C -0.128 4.128
17 H 0.126 0.874
18 C -0.148 4.148
19 C 0.032 3.968
20 H 0.080 0.920
21 C -0.162 4.162
22 N -0.338 5.338
23 C -0.353 4.353
24 H 0.089 0.911
25 C -0.260 4.260
26 N -0.599 5.599
27 Si 0.795 3.205
28 H -0.193 1.193
29 H -0.228 1.228
30 H -0.215 1.215
31 C 0.064 3.936
32 H 0.102 0.898
33 H 0.102 0.898
34 H 0.109 0.891
35 H 0.128 0.872
36 H 0.116 0.884
37 H 0.114 0.886
38 H 0.084 0.916
39 H 0.096 0.904
40 H 0.141 0.859
41 H 0.130 0.870
42 H 0.252 0.748
43 H 0.081 0.919
44 H 0.123 0.877
45 H 0.079 0.921
46 H 0.126 0.874
47 H 0.106 0.894
48 H 0.039 0.961
49 H 0.051 0.949
50 H 0.022 0.978
51 H 0.018 0.982
Dipole moment (debyes) X Y Z Total
from point charges 11.478 18.122 -9.671 23.530
hybrid contribution -0.778 -1.054 1.508 1.998
sum 10.699 17.068 -8.163 21.735
Atomic orbital electron populations
1.20284 0.84782 1.04557 1.04051 1.23890 0.99955 0.88541 1.01794
1.73831 0.89842 1.24818 1.22129 1.84758 1.21317 1.23484 1.68251
1.24881 0.99372 0.83117 1.00945 1.20586 0.88545 0.98478 1.05757
1.20960 0.92009 0.97049 1.11254 1.19459 1.02602 0.87361 0.96332
1.21585 1.05583 0.89880 0.98642 1.21377 0.76196 0.90245 0.83447
1.90802 1.52251 1.70441 1.33300 1.46006 1.70104 1.11459 1.08891
1.20781 0.95902 0.79570 0.99007 0.93718 1.21892 1.00320 0.95484
0.96132 1.22798 0.97808 0.95256 0.96920 0.87450 1.22925 0.96107
1.00293 0.95449 1.21890 0.89651 0.93810 0.91416 0.92048 1.22411
0.97095 0.96798 0.99887 1.44842 1.02083 1.77985 1.08891 1.19338
0.92514 1.35576 0.87908 0.91059 1.25469 0.95365 1.03394 1.01790
1.70173 0.96590 1.56793 1.36369 0.85184 0.77578 0.76961 0.80777
1.19349 1.22767 1.21546 1.21041 0.88210 0.95905 0.88438 0.89761
0.89796 0.89051 0.87193 0.88357 0.88565 0.91565 0.90382 0.85940
0.87034 0.74801 0.91903 0.87728 0.92140 0.87409 0.89430 0.96097
0.94888 0.97815 0.98237
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.37 10.39 71.23 0.74 -0.63 16
2 C 0.02 0.37 7.33 43.57 0.32 0.69 16
3 N -0.40 -9.79 12.07 -49.55 -0.60 -10.38 16
4 O 0.08 1.84 11.20 71.60 0.80 2.64 16
5 C -0.02 -0.35 7.49 25.04 0.19 -0.16 16
6 C -0.08 -0.74 10.30 71.24 0.73 0.00 16
7 C -0.21 -4.19 5.58 -19.73 -0.11 -4.30 16
8 C -0.02 -0.41 4.83 29.85 0.14 -0.27 16
9 C -0.12 -2.12 5.68 29.85 0.17 -1.95 16
10 C 0.50 14.62 7.78 87.66 0.68 15.30 16
11 O -0.59 -25.28 15.65 -3.01 -0.05 -25.33 16
12 N -0.71 -18.14 5.07 -442.52 -2.24 -20.38 16
13 C 0.15 5.21 2.07 45.00 0.09 5.30 16
14 H 0.04 2.22 5.39 -2.39 -0.01 2.21 16
15 C -0.10 -2.71 4.95 30.93 0.15 -2.56 16
16 C -0.11 -3.54 4.33 -9.05 -0.04 -3.58 16
17 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16
18 C -0.11 -3.26 6.18 32.18 0.20 -3.06 16
19 C 0.14 5.41 4.30 45.79 0.20 5.60 16
20 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16
21 C -0.12 -4.18 5.27 30.89 0.16 -4.01 16
22 N -0.61 -31.51 2.43 -664.45 -1.61 -33.12 16
23 C -0.22 -13.15 10.29 84.03 0.87 -12.28 16
24 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16
25 C -0.07 -4.08 5.49 84.86 0.47 -3.61 16
26 N -0.95 -59.77 10.35 21.65 0.22 -59.54 16
27 Si 0.97 49.24 29.55 68.60 2.03 51.27 16
28 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16
29 H -0.30 -15.59 7.11 99.48 0.71 -14.88 16
30 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16
31 C 0.19 9.25 4.10 86.85 0.36 9.61 16
32 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16
33 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16
34 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16
35 H 0.11 0.63 8.14 -2.39 -0.02 0.62 16
36 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16
37 H 0.10 0.94 7.43 -2.39 -0.02 0.92 16
38 H 0.07 1.69 8.10 -2.39 -0.02 1.67 16
39 H 0.08 1.79 7.39 -2.39 -0.02 1.77 16
40 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16
41 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16
42 H 0.41 6.46 8.60 -92.71 -0.80 5.66 16
43 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16
44 H 0.10 1.87 7.97 -2.39 -0.02 1.85 16
45 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16
46 H 0.11 2.26 7.75 -2.39 -0.02 2.24 16
47 H 0.09 2.24 8.00 -2.39 -0.02 2.22 16
48 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16
49 H 0.24 14.90 8.31 -92.71 -0.77 14.13 16
50 H 0.00 0.21 6.15 -2.38 -0.01 0.20 16
51 H 0.00 -0.04 7.40 -2.38 -0.02 -0.05 16
Total: -1.00 -84.72 402.03 4.01 -80.71
By element:
Atomic # 1 Polarization: 13.93 SS G_CDS: 0.14 Total: 14.07 kcal
Atomic # 6 Polarization: -5.24 SS G_CDS: 5.32 Total: 0.08 kcal
Atomic # 7 Polarization: -119.20 SS G_CDS: -4.23 Total: -123.43 kcal
Atomic # 8 Polarization: -23.44 SS G_CDS: 0.75 Total: -22.69 kcal
Atomic # 14 Polarization: 49.24 SS G_CDS: 2.03 Total: 51.27 kcal
Total: -84.72 4.01 -80.71 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001325351188.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 97.339 kcal
(2) G-P(sol) polarization free energy of solvation -84.717 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.622 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.011 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.706 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.633 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds