Wall clock time and date at job start Wed Apr 1 2020 04:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41378 * 126.80683 * 2 1 4 4 C 1.35451 * 103.98533 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.77559 * 180.02562 * 4 3 2 6 6 C 1.50703 * 115.54896 * 39.76073 * 5 4 3 7 7 O 1.21278 * 120.00121 * 245.96614 * 6 5 4 8 8 N 1.34775 * 119.99806 * 65.97257 * 6 5 4 9 9 C 1.46928 * 120.63028 * 5.22875 * 8 6 5 10 10 C 1.53192 * 108.77250 * 233.58707 * 9 8 6 11 11 C 1.53040 * 109.31690 * 305.36757 * 10 9 8 12 12 C 1.53036 * 109.53878 * 61.36077 * 11 10 9 13 13 H 1.09003 * 109.49780 * 58.59452 * 12 11 10 14 14 C 1.52993 * 109.49722 * 178.65377 * 12 11 10 15 15 N 1.46502 * 109.47293 * 295.00250 * 14 12 11 16 16 C 1.46501 * 119.99821 * 89.99967 * 15 14 12 17 17 C 1.36934 * 120.00299 * 269.99870 * 15 14 12 18 18 H 1.08007 * 119.99545 * 21.60186 * 17 15 14 19 19 C 1.38806 * 120.00405 * 201.60295 * 17 15 14 20 20 N 1.31618 * 120.00071 * 14.77580 * 19 17 15 21 21 Si 1.86806 * 120.00146 * 194.77460 * 19 17 15 22 22 H 1.48500 * 109.47066 * 90.00088 * 21 19 17 23 23 H 1.48505 * 109.47073 * 209.99848 * 21 19 17 24 24 H 1.48496 * 109.46865 * 330.00056 * 21 19 17 25 25 C 1.46921 * 120.62890 * 184.95180 * 8 6 5 26 26 C 1.53003 * 117.49913 * 254.05587 * 5 4 3 27 27 C 1.53000 * 59.99935 * 252.51066 * 26 5 4 28 28 O 1.34041 * 106.44956 * 0.02562 * 4 3 2 29 29 N 1.20921 * 111.56410 * 359.97438 * 28 4 3 30 30 H 1.09009 * 109.46689 * 269.99836 * 1 2 3 31 31 H 1.09002 * 109.46672 * 29.99065 * 1 2 3 32 32 H 1.08991 * 109.47602 * 149.99839 * 1 2 3 33 33 H 1.07997 * 128.00609 * 0.02714 * 3 2 1 34 34 H 1.09000 * 109.58639 * 353.37204 * 9 8 6 35 35 H 1.08994 * 109.58809 * 113.66189 * 9 8 6 36 36 H 1.09002 * 109.50053 * 65.31959 * 10 9 8 37 37 H 1.09003 * 109.49577 * 185.41465 * 10 9 8 38 38 H 1.08995 * 109.46496 * 181.38940 * 11 10 9 39 39 H 1.09000 * 109.45491 * 301.36025 * 11 10 9 40 40 H 1.09000 * 109.47390 * 55.00060 * 14 12 11 41 41 H 1.09001 * 109.47330 * 175.00450 * 14 12 11 42 42 H 1.09004 * 109.47168 * 94.72621 * 16 15 14 43 43 H 1.09004 * 109.47157 * 214.72095 * 16 15 14 44 44 H 1.08993 * 109.47089 * 334.72605 * 16 15 14 45 45 H 0.97007 * 120.00029 * 180.02562 * 20 19 17 46 46 H 1.09003 * 109.58651 * 246.19957 * 25 8 6 47 47 H 1.09002 * 109.59145 * 6.62560 * 25 8 6 48 48 H 1.09001 * 117.49728 * 0.02562 * 26 5 4 49 49 H 1.09003 * 117.49898 * 145.02323 * 26 5 4 50 50 H 1.09007 * 117.49798 * 252.51070 * 27 26 5 51 51 H 1.08997 * 117.49929 * 107.48763 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6025 0.6066 0.0006 5 6 4.9022 1.3692 0.0014 6 6 4.9334 2.5995 0.8712 7 8 5.0405 3.6968 0.3660 8 7 4.8423 2.4803 2.2106 9 6 4.8273 1.1551 2.8449 10 6 3.5957 1.0559 3.7505 11 6 3.5979 2.2253 4.7378 12 6 3.5259 3.5457 3.9674 13 1 2.6232 3.5618 3.3567 14 6 3.4943 4.7127 4.9562 15 7 2.2587 4.6544 5.7411 16 6 2.2255 3.9067 7.0004 17 6 1.1348 5.2989 5.2977 18 1 1.0313 5.5459 4.2513 19 6 0.1285 5.6348 6.1929 20 7 0.3629 5.6056 7.4877 21 14 -1.5583 6.1284 5.5599 22 1 -2.4133 4.9206 5.4359 23 1 -2.1841 7.0823 6.5106 24 1 -1.4184 6.7746 4.2303 25 6 4.7623 3.6732 3.0645 26 6 5.7009 1.4054 -1.3031 27 6 6.1954 0.5615 -0.1266 28 8 3.4537 -0.7255 0.0003 29 7 2.2868 -1.0424 0.0002 30 1 -0.3633 0.0000 1.0278 31 1 -0.3633 0.8901 -0.5137 32 1 -0.3634 -0.8899 -0.5138 33 1 2.0711 2.1742 0.0004 34 1 4.7793 0.3830 2.0770 35 1 5.7317 1.0240 3.4389 36 1 2.6924 1.0954 3.1419 37 1 3.6235 0.1153 4.3007 38 1 2.7358 2.1435 5.3996 39 1 4.5133 2.1996 5.3290 40 1 4.3527 4.6461 5.6246 41 1 3.5326 5.6543 4.4083 42 1 2.4189 4.5853 7.8312 43 1 1.2439 3.4495 7.1258 44 1 2.9889 3.1289 6.9814 45 1 -0.3405 5.8400 8.1133 46 1 5.6604 3.7443 3.6781 47 1 4.6714 4.5631 2.4417 48 1 5.2860 0.8779 -2.1620 49 1 6.2491 2.3192 -1.5325 50 1 7.0688 0.9202 0.4181 51 1 6.1059 -0.5215 -0.2113 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480081034.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:45 Heat of formation + Delta-G solvation = 76.927742 kcal Electronic energy + Delta-G solvation = -32346.382381 eV Core-core repulsion = 28250.871439 eV Total energy + Delta-G solvation = -4095.510943 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.13552 -40.61763 -38.17320 -36.80897 -35.56171 -34.95228 -32.88462 -31.73615 -31.65944 -30.31846 -28.85764 -26.46616 -26.30253 -25.40484 -24.06490 -23.44133 -22.82195 -22.43008 -21.30640 -20.47544 -19.63073 -18.88478 -17.80735 -17.78720 -16.81704 -16.57900 -16.12035 -15.62099 -15.10545 -14.72778 -14.56110 -14.22519 -14.07255 -13.82477 -13.62649 -13.50908 -13.45028 -13.24113 -13.06604 -12.86904 -12.83178 -12.59437 -12.36684 -11.99641 -11.75858 -11.53524 -11.34637 -11.29004 -11.08761 -10.95052 -10.93677 -10.72760 -10.68620 -10.35728 -10.30661 -10.14663 -10.00716 -9.86934 -9.84811 -9.75367 -9.38148 -8.65210 -8.48089 -6.72765 -5.70991 -3.15801 1.18311 2.04536 2.10627 2.76115 3.00528 3.30943 3.38439 3.45261 3.46376 3.96617 4.00832 4.15011 4.38907 4.51061 4.51876 4.79701 4.84328 5.03042 5.04899 5.11013 5.19544 5.21840 5.26608 5.31372 5.34889 5.39081 5.43784 5.46100 5.56380 5.62126 5.63315 5.66008 5.69252 5.80532 5.88809 5.95613 5.98973 6.06695 6.11938 6.29450 6.45028 6.57859 6.64424 6.77889 6.83462 6.96558 7.31707 7.36911 7.73037 7.82520 8.01726 8.06432 8.40810 9.25526 9.89598 10.37844 11.33767 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011593 B = 0.003412 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.677818 B = 8205.180697 C = 9289.466663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.025 3.975 3 C -0.209 4.209 4 C 0.008 3.992 5 C -0.089 4.089 6 C 0.559 3.441 7 O -0.529 6.529 8 N -0.595 5.595 9 C 0.109 3.891 10 C -0.133 4.133 11 C -0.109 4.109 12 C -0.119 4.119 13 H 0.072 0.928 14 C 0.159 3.841 15 N -0.598 5.598 16 C 0.161 3.839 17 C -0.252 4.252 18 H 0.067 0.933 19 C 0.002 3.998 20 N -0.907 5.907 21 Si 0.901 3.099 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.116 3.884 26 C -0.125 4.125 27 C -0.149 4.149 28 O 0.100 5.900 29 N -0.364 5.364 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.171 0.829 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.037 0.963 41 H 0.048 0.952 42 H 0.027 0.973 43 H 0.039 0.961 44 H 0.003 0.997 45 H 0.251 0.749 46 H 0.067 0.933 47 H 0.090 0.910 48 H 0.108 0.892 49 H 0.117 0.883 50 H 0.111 0.889 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.730 -13.574 -14.305 22.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.134 4.134 3 C -0.230 4.230 4 C -0.056 4.056 5 C -0.094 4.094 6 C 0.344 3.656 7 O -0.405 6.405 8 N -0.326 5.326 9 C -0.014 4.014 10 C -0.171 4.171 11 C -0.146 4.146 12 C -0.141 4.141 13 H 0.091 0.909 14 C 0.031 3.969 15 N -0.321 5.321 16 C 0.016 3.984 17 C -0.382 4.382 18 H 0.085 0.915 19 C -0.196 4.196 20 N -0.553 5.553 21 Si 0.731 3.269 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.205 1.205 25 C -0.006 4.006 26 C -0.162 4.162 27 C -0.186 4.186 28 O 0.034 5.966 29 N -0.069 5.069 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.188 0.812 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.045 0.955 43 H 0.058 0.942 44 H 0.021 0.979 45 H 0.062 0.938 46 H 0.085 0.915 47 H 0.109 0.891 48 H 0.126 0.874 49 H 0.135 0.865 50 H 0.129 0.871 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 10.433 -14.244 -14.383 22.773 hybrid contribution -1.281 0.998 -0.110 1.628 sum 9.152 -13.246 -14.493 21.662 Atomic orbital electron populations 1.20210 0.85704 1.03771 1.03879 1.23578 0.99148 0.88475 1.02167 1.22395 0.90857 1.01430 1.08313 1.22711 0.95362 0.83667 1.03858 1.19352 0.88704 0.97270 1.04083 1.18900 0.76694 0.88029 0.81942 1.90720 1.49685 1.26748 1.73379 1.48056 1.71199 1.08264 1.05128 1.21791 0.99136 0.83670 0.96829 1.21916 0.97503 0.99603 0.98112 1.21591 1.02517 0.93158 0.97383 1.22333 0.96590 0.97734 0.97479 0.90915 1.20649 0.89285 0.94579 0.92433 1.43838 1.07189 1.58177 1.22865 1.20857 0.97374 0.92344 0.87780 1.19180 0.94843 1.31780 0.92386 0.91499 1.24949 0.99310 1.00091 0.95278 1.70086 1.31916 1.52814 1.00462 0.86308 0.84759 0.77901 0.77941 1.21609 1.21788 1.20500 1.21906 0.98837 0.87182 0.92639 1.23184 0.99619 1.02789 0.90633 1.23237 0.94312 0.99365 1.01683 1.84789 1.21887 1.21954 1.67994 1.73841 0.89051 1.23717 1.20272 0.89730 0.89824 0.90558 0.81174 0.90389 0.91099 0.91938 0.91268 0.90083 0.92696 0.94513 0.93360 0.95460 0.94226 0.97888 0.93838 0.91500 0.89143 0.87362 0.86484 0.87109 0.86761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.47 36.01 0.38 -0.36 16 2 C 0.02 0.30 7.33 -82.10 -0.60 -0.30 16 3 C -0.21 -2.57 10.75 -39.38 -0.42 -2.99 16 4 C 0.01 0.09 5.21 -35.30 -0.18 -0.10 16 5 C -0.09 -0.94 1.28 -156.81 -0.20 -1.14 16 6 C 0.56 7.53 6.69 -10.98 -0.07 7.45 16 7 O -0.53 -8.82 16.15 5.56 0.09 -8.73 16 8 N -0.59 -7.69 2.97 -172.51 -0.51 -8.21 16 9 C 0.11 1.20 6.11 -3.71 -0.02 1.17 16 10 C -0.13 -1.69 6.08 -26.61 -0.16 -1.85 16 11 C -0.11 -1.64 4.21 -26.69 -0.11 -1.75 16 12 C -0.12 -1.97 2.56 -90.28 -0.23 -2.21 16 13 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 14 C 0.16 3.12 5.14 -4.04 -0.02 3.10 16 15 N -0.60 -14.56 2.75 -181.12 -0.50 -15.06 16 16 C 0.16 3.84 7.89 59.85 0.47 4.31 16 17 C -0.25 -6.85 9.66 -15.06 -0.15 -7.00 16 18 H 0.07 1.80 7.87 -52.48 -0.41 1.39 16 19 C 0.00 0.05 5.06 -17.43 -0.09 -0.04 16 20 N -0.91 -26.39 10.73 55.49 0.60 -25.80 16 21 Si 0.90 21.90 29.58 -169.99 -5.03 16.87 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.12 1.66 5.73 -3.49 -0.02 1.64 16 26 C -0.12 -1.04 9.76 -26.73 -0.26 -1.30 16 27 C -0.15 -1.10 9.32 -26.73 -0.25 -1.35 16 28 O 0.10 1.19 10.97 17.17 0.19 1.38 16 29 N -0.36 -4.71 12.07 33.42 0.40 -4.31 16 30 H 0.08 0.79 8.14 -51.92 -0.42 0.36 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.17 2.11 8.06 -52.49 -0.42 1.69 16 34 H 0.08 0.80 4.95 -51.93 -0.26 0.54 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 1.44 5.86 -51.93 -0.30 1.13 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.04 0.67 8.07 -51.93 -0.42 0.25 16 41 H 0.05 0.98 8.04 -51.93 -0.42 0.56 16 42 H 0.03 0.71 7.39 -51.93 -0.38 0.33 16 43 H 0.04 1.02 7.27 -51.93 -0.38 0.65 16 44 H 0.00 0.05 6.18 -51.93 -0.32 -0.27 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.09 1.42 7.04 -51.93 -0.37 1.06 16 48 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.12 1.00 8.01 -51.93 -0.42 0.59 16 50 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.11 0.71 8.00 -51.93 -0.42 0.29 16 LS Contribution 404.41 15.07 6.09 6.09 Total: -1.00 -31.86 404.41 -8.91 -40.77 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -8.30 Total: -0.29 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -1.95 Total: -2.71 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.01 Total: -53.37 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: 0.28 Total: -7.36 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.86 -8.91 -40.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480081034.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.696 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds