Wall clock time and date at job start Wed Apr 1 2020 04:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41378 * 126.80683 * 2 1 4 4 C 1.35451 * 103.98533 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.77559 * 180.02562 * 4 3 2 6 6 C 1.50703 * 115.54896 * 39.76073 * 5 4 3 7 7 O 1.21278 * 120.00121 * 245.96614 * 6 5 4 8 8 N 1.34775 * 119.99806 * 65.97257 * 6 5 4 9 9 C 1.46928 * 120.63028 * 5.22875 * 8 6 5 10 10 C 1.53192 * 108.77250 * 233.58707 * 9 8 6 11 11 C 1.53040 * 109.31690 * 305.36757 * 10 9 8 12 12 C 1.53036 * 109.53878 * 61.36077 * 11 10 9 13 13 H 1.09003 * 109.49780 * 58.59452 * 12 11 10 14 14 C 1.52993 * 109.49722 * 178.65377 * 12 11 10 15 15 N 1.46502 * 109.47293 * 295.00250 * 14 12 11 16 16 C 1.46501 * 119.99821 * 89.99967 * 15 14 12 17 17 C 1.36934 * 120.00299 * 269.99870 * 15 14 12 18 18 H 1.08007 * 119.99545 * 21.60186 * 17 15 14 19 19 C 1.38806 * 120.00405 * 201.60295 * 17 15 14 20 20 N 1.31618 * 120.00071 * 14.77580 * 19 17 15 21 21 Si 1.86806 * 120.00146 * 194.77460 * 19 17 15 22 22 H 1.48500 * 109.47066 * 90.00088 * 21 19 17 23 23 H 1.48505 * 109.47073 * 209.99848 * 21 19 17 24 24 H 1.48496 * 109.46865 * 330.00056 * 21 19 17 25 25 C 1.46921 * 120.62890 * 184.95180 * 8 6 5 26 26 C 1.53003 * 117.49913 * 254.05587 * 5 4 3 27 27 C 1.53000 * 59.99935 * 252.51066 * 26 5 4 28 28 O 1.34041 * 106.44956 * 0.02562 * 4 3 2 29 29 N 1.20921 * 111.56410 * 359.97438 * 28 4 3 30 30 H 1.09009 * 109.46689 * 269.99836 * 1 2 3 31 31 H 1.09002 * 109.46672 * 29.99065 * 1 2 3 32 32 H 1.08991 * 109.47602 * 149.99839 * 1 2 3 33 33 H 1.07997 * 128.00609 * 0.02714 * 3 2 1 34 34 H 1.09000 * 109.58639 * 353.37204 * 9 8 6 35 35 H 1.08994 * 109.58809 * 113.66189 * 9 8 6 36 36 H 1.09002 * 109.50053 * 65.31959 * 10 9 8 37 37 H 1.09003 * 109.49577 * 185.41465 * 10 9 8 38 38 H 1.08995 * 109.46496 * 181.38940 * 11 10 9 39 39 H 1.09000 * 109.45491 * 301.36025 * 11 10 9 40 40 H 1.09000 * 109.47390 * 55.00060 * 14 12 11 41 41 H 1.09001 * 109.47330 * 175.00450 * 14 12 11 42 42 H 1.09004 * 109.47168 * 94.72621 * 16 15 14 43 43 H 1.09004 * 109.47157 * 214.72095 * 16 15 14 44 44 H 1.08993 * 109.47089 * 334.72605 * 16 15 14 45 45 H 0.97007 * 120.00029 * 180.02562 * 20 19 17 46 46 H 1.09003 * 109.58651 * 246.19957 * 25 8 6 47 47 H 1.09002 * 109.59145 * 6.62560 * 25 8 6 48 48 H 1.09001 * 117.49728 * 0.02562 * 26 5 4 49 49 H 1.09003 * 117.49898 * 145.02323 * 26 5 4 50 50 H 1.09007 * 117.49798 * 252.51070 * 27 26 5 51 51 H 1.08997 * 117.49929 * 107.48763 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6025 0.6066 0.0006 5 6 4.9022 1.3692 0.0014 6 6 4.9334 2.5995 0.8712 7 8 5.0405 3.6968 0.3660 8 7 4.8423 2.4803 2.2106 9 6 4.8273 1.1551 2.8449 10 6 3.5957 1.0559 3.7505 11 6 3.5979 2.2253 4.7378 12 6 3.5259 3.5457 3.9674 13 1 2.6232 3.5618 3.3567 14 6 3.4943 4.7127 4.9562 15 7 2.2587 4.6544 5.7411 16 6 2.2255 3.9067 7.0004 17 6 1.1348 5.2989 5.2977 18 1 1.0313 5.5459 4.2513 19 6 0.1285 5.6348 6.1929 20 7 0.3629 5.6056 7.4877 21 14 -1.5583 6.1284 5.5599 22 1 -2.4133 4.9206 5.4359 23 1 -2.1841 7.0823 6.5106 24 1 -1.4184 6.7746 4.2303 25 6 4.7623 3.6732 3.0645 26 6 5.7009 1.4054 -1.3031 27 6 6.1954 0.5615 -0.1266 28 8 3.4537 -0.7255 0.0003 29 7 2.2868 -1.0424 0.0002 30 1 -0.3633 0.0000 1.0278 31 1 -0.3633 0.8901 -0.5137 32 1 -0.3634 -0.8899 -0.5138 33 1 2.0711 2.1742 0.0004 34 1 4.7793 0.3830 2.0770 35 1 5.7317 1.0240 3.4389 36 1 2.6924 1.0954 3.1419 37 1 3.6235 0.1153 4.3007 38 1 2.7358 2.1435 5.3996 39 1 4.5133 2.1996 5.3290 40 1 4.3527 4.6461 5.6246 41 1 3.5326 5.6543 4.4083 42 1 2.4189 4.5853 7.8312 43 1 1.2439 3.4495 7.1258 44 1 2.9889 3.1289 6.9814 45 1 -0.3405 5.8400 8.1133 46 1 5.6604 3.7443 3.6781 47 1 4.6714 4.5631 2.4417 48 1 5.2860 0.8779 -2.1620 49 1 6.2491 2.3192 -1.5325 50 1 7.0688 0.9202 0.4181 51 1 6.1059 -0.5215 -0.2113 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480081034.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:43 Heat of formation + Delta-G solvation = 59.865780 kcal Electronic energy + Delta-G solvation = -32347.122244 eV Core-core repulsion = 28250.871439 eV Total energy + Delta-G solvation = -4096.250805 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -46.06263 -41.63648 -39.34794 -37.77713 -37.21625 -35.84130 -34.42291 -33.00887 -32.60458 -32.01832 -29.67922 -28.19556 -27.65329 -26.93654 -25.08636 -24.34139 -23.94811 -23.35789 -22.64766 -21.76920 -20.88901 -19.83862 -18.79378 -18.73348 -18.61202 -17.71967 -17.24313 -16.90305 -16.49400 -15.88566 -15.74846 -15.59704 -15.38859 -15.01429 -14.88359 -14.62693 -14.54202 -14.28731 -14.27488 -14.02432 -13.92783 -13.79871 -13.41849 -13.29463 -12.96074 -12.80547 -12.65911 -12.54901 -12.41623 -12.37811 -12.16667 -12.06616 -12.04170 -11.89834 -11.84874 -11.68742 -11.58582 -11.22188 -11.03874 -10.94137 -10.61962 -10.28629 -9.71371 -8.74765 -7.82830 -5.29370 0.28238 1.11234 1.13733 1.43075 1.43992 1.52661 1.79260 2.06791 2.49605 2.57046 3.13851 3.17928 3.29001 3.30711 3.64517 3.66676 3.75427 3.83011 3.93373 4.00086 4.01752 4.18060 4.24408 4.35998 4.42235 4.46617 4.53820 4.58646 4.59731 4.65307 4.66885 4.75603 4.78262 4.78960 4.80801 4.84106 4.90412 4.92467 4.97621 5.11157 5.13856 5.18059 5.19293 5.32948 5.44605 5.49802 5.55735 5.62748 5.74110 6.28629 6.33031 6.97848 7.15728 7.16277 7.89991 8.31564 9.19485 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011593 B = 0.003412 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.677818 B = 8205.180697 C = 9289.466663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.020 3.980 3 C -0.231 4.231 4 C 0.022 3.978 5 C -0.111 4.111 6 C 0.558 3.442 7 O -0.568 6.568 8 N -0.595 5.595 9 C 0.111 3.889 10 C -0.126 4.126 11 C -0.104 4.104 12 C -0.103 4.103 13 H 0.037 0.963 14 C 0.157 3.843 15 N -0.613 5.613 16 C 0.179 3.821 17 C -0.258 4.258 18 H 0.062 0.938 19 C -0.050 4.050 20 N -0.937 5.937 21 Si 0.960 3.040 22 H -0.287 1.287 23 H -0.293 1.293 24 H -0.272 1.272 25 C 0.125 3.875 26 C -0.121 4.121 27 C -0.121 4.121 28 O 0.106 5.894 29 N -0.381 5.381 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.161 0.839 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.038 0.962 37 H 0.090 0.910 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.057 0.943 41 H 0.036 0.964 42 H -0.001 1.001 43 H 0.010 0.990 44 H 0.041 0.959 45 H 0.247 0.753 46 H 0.092 0.908 47 H 0.071 0.929 48 H 0.121 0.879 49 H 0.113 0.887 50 H 0.125 0.875 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.576 -15.569 -15.350 25.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.138 4.138 3 C -0.253 4.253 4 C -0.042 4.042 5 C -0.116 4.116 6 C 0.345 3.655 7 O -0.447 6.447 8 N -0.326 5.326 9 C -0.011 4.011 10 C -0.164 4.164 11 C -0.142 4.142 12 C -0.125 4.125 13 H 0.056 0.944 14 C 0.030 3.970 15 N -0.336 5.336 16 C 0.034 3.966 17 C -0.388 4.388 18 H 0.080 0.920 19 C -0.245 4.245 20 N -0.584 5.584 21 Si 0.789 3.211 22 H -0.214 1.214 23 H -0.220 1.220 24 H -0.197 1.197 25 C 0.002 3.998 26 C -0.158 4.158 27 C -0.158 4.158 28 O 0.040 5.960 29 N -0.087 5.087 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.179 0.821 34 H 0.109 0.891 35 H 0.118 0.882 36 H 0.057 0.943 37 H 0.109 0.891 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.076 0.924 41 H 0.054 0.946 42 H 0.017 0.983 43 H 0.028 0.972 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.110 0.890 47 H 0.089 0.911 48 H 0.139 0.861 49 H 0.131 0.869 50 H 0.143 0.857 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 12.305 -16.271 -15.452 25.591 hybrid contribution -1.799 1.634 0.182 2.437 sum 10.506 -14.637 -15.270 23.617 Atomic orbital electron populations 1.20316 0.84310 1.04893 1.04164 1.23926 1.00216 0.88140 1.01509 1.22434 0.91805 1.01227 1.09830 1.22790 0.95432 0.83536 1.02468 1.19241 0.89742 0.97065 1.05534 1.19333 0.75611 0.88457 0.82080 1.90699 1.51432 1.28550 1.74064 1.48103 1.70766 1.08563 1.05130 1.21949 0.99320 0.82759 0.97062 1.21842 0.97487 0.99441 0.97671 1.21505 1.02175 0.93010 0.97476 1.22000 0.96384 0.97423 0.96696 0.94444 1.20813 0.88056 0.95387 0.92757 1.44043 1.08099 1.58131 1.23356 1.20587 0.96911 0.92311 0.86775 1.19416 0.96078 1.31101 0.92206 0.92038 1.25637 1.02439 1.00945 0.95518 1.70234 1.32528 1.54288 1.01324 0.85370 0.80813 0.77433 0.77511 1.21359 1.21993 1.19722 1.21681 0.98363 0.87390 0.92357 1.23302 0.98706 1.03169 0.90638 1.23450 0.92353 1.00095 0.99921 1.84764 1.21524 1.21846 1.67847 1.73820 0.89476 1.24092 1.21327 0.89764 0.88759 0.89425 0.82132 0.89127 0.88160 0.94308 0.89111 0.93006 0.90527 0.92449 0.94575 0.98297 0.97154 0.94025 0.94337 0.89037 0.91056 0.86086 0.86863 0.85688 0.84803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.47 71.24 0.75 -0.71 16 2 C 0.02 0.48 7.33 43.58 0.32 0.80 16 3 C -0.23 -5.67 10.75 22.40 0.24 -5.43 16 4 C 0.02 0.46 5.21 25.04 0.13 0.59 16 5 C -0.11 -2.11 1.28 -53.67 -0.07 -2.18 16 6 C 0.56 14.36 6.69 87.66 0.59 14.95 16 7 O -0.57 -18.91 16.15 -3.02 -0.05 -18.96 16 8 N -0.59 -14.31 2.97 -818.08 -2.43 -16.74 16 9 C 0.11 2.08 6.11 86.36 0.53 2.61 16 10 C -0.13 -2.93 6.08 30.67 0.19 -2.75 16 11 C -0.10 -2.96 4.21 30.62 0.13 -2.83 16 12 C -0.10 -3.38 2.56 -10.57 -0.03 -3.41 16 13 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 14 C 0.16 6.13 5.14 86.38 0.44 6.57 16 15 N -0.61 -30.33 2.75 -726.94 -2.00 -32.33 16 16 C 0.18 8.65 7.89 127.77 1.01 9.66 16 17 C -0.26 -14.32 9.66 84.03 0.81 -13.51 16 18 H 0.06 3.41 7.87 -2.91 -0.02 3.39 16 19 C -0.05 -2.86 5.06 84.86 0.43 -2.43 16 20 N -0.94 -55.88 10.73 21.65 0.23 -55.65 16 21 Si 0.96 45.91 29.58 68.60 2.03 47.94 16 22 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 23 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 25 C 0.12 3.42 5.73 86.51 0.50 3.91 16 26 C -0.12 -1.72 9.76 30.60 0.30 -1.42 16 27 C -0.12 -1.34 9.32 30.59 0.29 -1.06 16 28 O 0.11 2.30 10.97 71.63 0.79 3.09 16 29 N -0.38 -9.39 12.07 -49.54 -0.60 -9.99 16 30 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.16 4.18 8.06 -2.91 -0.02 4.15 16 34 H 0.09 1.52 4.95 -2.39 -0.01 1.51 16 35 H 0.10 1.39 8.14 -2.39 -0.02 1.38 16 36 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.05 1.79 5.86 -2.39 -0.01 1.78 16 39 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.06 2.01 8.07 -2.39 -0.02 1.99 16 41 H 0.04 1.48 8.04 -2.39 -0.02 1.46 16 42 H 0.00 -0.07 7.39 -2.38 -0.02 -0.08 16 43 H 0.01 0.52 7.27 -2.38 -0.02 0.50 16 44 H 0.04 1.65 6.18 -2.39 -0.01 1.64 16 45 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 46 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.07 2.26 7.04 -2.39 -0.02 2.24 16 48 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.11 1.74 8.01 -2.39 -0.02 1.72 16 50 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 51 H 0.13 1.02 8.00 -2.39 -0.02 1.00 16 Total: -1.00 -71.40 404.41 5.44 -65.96 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.92 Total: 13.31 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 6.54 Total: 3.37 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -4.79 Total: -114.71 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: 0.74 Total: -15.87 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -71.40 5.44 -65.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480081034.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.828 kcal (2) G-P(sol) polarization free energy of solvation -71.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds