Wall clock time and date at job start Wed Apr 1 2020 04:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41375 * 126.80406 * 2 1 4 4 C 1.35452 * 103.98789 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.77978 * 179.97438 * 4 3 2 6 6 C 1.50698 * 115.55145 * 29.59422 * 5 4 3 7 7 O 1.21278 * 120.00624 * 245.50785 * 6 5 4 8 8 N 1.34784 * 119.99709 * 65.50300 * 6 5 4 9 9 C 1.46924 * 120.62920 * 5.51638 * 8 6 5 10 10 C 1.53185 * 108.77499 * 126.36709 * 9 8 6 11 11 C 1.53040 * 109.31480 * 54.63507 * 10 9 8 12 12 C 1.53042 * 109.53659 * 298.63669 * 11 10 9 13 13 H 1.09001 * 109.49609 * 301.37536 * 12 11 10 14 14 C 1.53005 * 109.49617 * 181.31310 * 12 11 10 15 15 N 1.46497 * 109.47088 * 65.00064 * 14 12 11 16 16 C 1.46499 * 120.00230 * 269.99730 * 15 14 12 17 17 C 1.36936 * 119.99924 * 89.99703 * 15 14 12 18 18 H 1.08006 * 120.00440 * 24.82532 * 17 15 14 19 19 C 1.38815 * 119.99792 * 204.82027 * 17 15 14 20 20 N 1.31611 * 120.00214 * 5.98054 * 19 17 15 21 21 Si 1.86808 * 119.99563 * 185.97613 * 19 17 15 22 22 H 1.48497 * 109.47410 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46804 * 120.00620 * 21 19 17 24 24 H 1.48498 * 109.46933 * 239.99733 * 21 19 17 25 25 C 1.46919 * 120.63102 * 185.23828 * 8 6 5 26 26 C 1.53001 * 117.49895 * 243.92720 * 5 4 3 27 27 C 1.52997 * 117.50106 * 175.26966 * 5 4 3 28 28 O 1.34042 * 106.44331 * 0.02562 * 4 3 2 29 29 N 1.20914 * 111.56907 * 359.70921 * 28 4 3 30 30 H 1.09005 * 109.47034 * 89.99595 * 1 2 3 31 31 H 1.09006 * 109.47305 * 330.00228 * 1 2 3 32 32 H 1.08996 * 109.47387 * 210.00133 * 1 2 3 33 33 H 1.07996 * 128.01092 * 359.96423 * 3 2 1 34 34 H 1.09002 * 109.58775 * 246.15703 * 9 8 6 35 35 H 1.09000 * 109.59144 * 6.43994 * 9 8 6 36 36 H 1.09006 * 109.50243 * 174.58453 * 10 9 8 37 37 H 1.09000 * 109.50053 * 294.68528 * 10 9 8 38 38 H 1.08998 * 109.45781 * 58.65444 * 11 10 9 39 39 H 1.08994 * 109.46553 * 178.61498 * 11 10 9 40 40 H 1.09010 * 109.46688 * 184.99948 * 14 12 11 41 41 H 1.08996 * 109.47319 * 304.99512 * 14 12 11 42 42 H 1.09003 * 109.47032 * 95.35000 * 16 15 14 43 43 H 1.08998 * 109.47441 * 215.35941 * 16 15 14 44 44 H 1.09003 * 109.46761 * 335.35779 * 16 15 14 45 45 H 0.97003 * 120.00342 * 179.97438 * 20 19 17 46 46 H 1.09005 * 109.58591 * 353.41606 * 25 8 6 47 47 H 1.08998 * 109.59105 * 113.84162 * 25 8 6 48 48 H 1.09001 * 117.49967 * 359.97438 * 26 5 4 49 49 H 1.08997 * 117.50070 * 145.01551 * 26 5 4 50 50 H 1.08998 * 117.50146 * 214.97639 * 27 5 4 51 51 H 1.09009 * 117.49684 * 359.97139 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6025 0.6067 0.0006 5 6 4.9022 1.3694 0.0003 6 6 4.8644 2.7185 0.6708 7 8 5.0319 3.7258 0.0166 8 7 4.6443 2.8055 1.9977 9 6 4.5595 1.5933 2.8236 10 6 5.5489 1.7187 3.9863 11 6 5.2740 3.0180 4.7470 12 6 5.4753 4.2116 3.8106 13 1 6.4944 4.2030 3.4240 14 6 5.2321 5.5113 4.5805 15 7 6.2516 5.6599 5.6220 16 6 6.0174 5.1110 6.9599 17 6 7.4235 6.3119 5.3449 18 1 7.4602 7.0426 4.5505 19 6 8.5643 6.0336 6.0852 20 7 8.5521 5.0619 6.9728 21 14 10.1170 7.0383 5.8214 22 1 9.8714 8.0637 4.7757 23 1 10.4949 7.7080 7.0918 24 1 11.2187 6.1421 5.3876 25 6 4.4906 4.1146 2.6467 26 6 5.8136 1.2117 -1.2185 27 6 6.1960 0.5606 0.1130 28 8 3.4537 -0.7254 0.0003 29 7 2.2868 -1.0424 0.0054 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 0.8900 0.5138 32 1 -0.3634 -0.8899 0.5138 33 1 2.0710 2.1742 -0.0005 34 1 3.5475 1.4876 3.2146 35 1 4.8108 0.7214 2.2197 36 1 5.4281 0.8703 4.6600 37 1 6.5671 1.7332 3.5977 38 1 4.2478 3.0135 5.1142 39 1 5.9606 3.0977 5.5897 40 1 5.2882 6.3562 3.8939 41 1 4.2444 5.4818 5.0404 42 1 6.4694 4.1216 7.0310 43 1 6.4636 5.7688 7.7058 44 1 4.9449 5.0341 7.1384 45 1 9.3494 4.8672 7.4899 46 1 4.6989 4.9061 1.9267 47 1 3.4729 4.2188 3.0230 48 1 5.4733 0.5559 -2.0199 49 1 6.3861 2.0835 -1.5351 50 1 7.0199 1.0043 0.6718 51 1 6.1070 -0.5233 0.1878 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480081035.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:48 Heat of formation + Delta-G solvation = 76.740424 kcal Electronic energy + Delta-G solvation = -31986.622029 eV Core-core repulsion = 27891.102964 eV Total energy + Delta-G solvation = -4095.519066 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -45.21316 -40.56949 -38.09454 -36.75050 -35.53304 -35.05799 -32.82241 -31.76090 -31.61820 -30.33007 -28.98883 -26.41005 -26.23288 -25.37950 -24.04070 -23.45698 -22.80941 -22.34790 -21.33444 -20.46524 -19.54724 -18.79376 -17.90260 -17.80165 -16.78253 -16.64136 -16.08176 -15.50690 -15.00723 -14.83291 -14.53291 -14.23802 -13.99368 -13.80987 -13.69228 -13.55037 -13.41023 -13.31229 -13.13488 -12.82680 -12.72496 -12.63272 -12.35888 -11.92052 -11.68970 -11.51767 -11.37552 -11.22221 -11.07987 -10.96951 -10.84635 -10.70994 -10.52077 -10.37639 -10.27172 -10.14463 -9.96699 -9.88126 -9.77389 -9.67194 -9.41940 -8.59880 -8.46586 -6.70568 -5.71449 -3.18903 1.11014 1.93456 2.15081 2.73368 3.03286 3.37723 3.41940 3.45452 3.47265 3.89640 3.93065 4.20628 4.42742 4.48272 4.50818 4.76206 4.92833 4.94040 5.14027 5.14984 5.16319 5.22500 5.27901 5.30722 5.31772 5.44207 5.47080 5.48293 5.49274 5.59085 5.71288 5.74586 5.77293 5.82208 5.86710 5.96931 6.09879 6.14818 6.20964 6.39751 6.52792 6.68108 6.72656 6.78335 6.97813 7.10689 7.38480 7.41216 7.77618 7.84007 7.97689 8.07772 8.42989 9.26665 9.88621 10.38198 11.33078 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017162 B = 0.002740 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.087493 B =10215.541028 C =10771.830795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.021 3.979 3 C -0.217 4.217 4 C 0.017 3.983 5 C -0.093 4.093 6 C 0.559 3.441 7 O -0.529 6.529 8 N -0.593 5.593 9 C 0.110 3.890 10 C -0.132 4.132 11 C -0.111 4.111 12 C -0.119 4.119 13 H 0.076 0.924 14 C 0.160 3.840 15 N -0.600 5.600 16 C 0.165 3.835 17 C -0.250 4.250 18 H 0.067 0.933 19 C 0.003 3.997 20 N -0.909 5.909 21 Si 0.902 3.098 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.115 3.885 26 C -0.125 4.125 27 C -0.147 4.147 28 O 0.101 5.899 29 N -0.364 5.364 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.170 0.830 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.049 0.951 39 H 0.089 0.911 40 H 0.044 0.956 41 H 0.037 0.963 42 H 0.033 0.967 43 H 0.041 0.959 44 H -0.007 1.007 45 H 0.251 0.749 46 H 0.089 0.911 47 H 0.063 0.937 48 H 0.108 0.892 49 H 0.118 0.882 50 H 0.114 0.886 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.969 -12.085 -12.776 21.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.138 4.138 3 C -0.239 4.239 4 C -0.047 4.047 5 C -0.098 4.098 6 C 0.344 3.656 7 O -0.405 6.405 8 N -0.325 5.325 9 C -0.013 4.013 10 C -0.170 4.170 11 C -0.148 4.148 12 C -0.141 4.141 13 H 0.094 0.906 14 C 0.032 3.968 15 N -0.322 5.322 16 C 0.021 3.979 17 C -0.380 4.380 18 H 0.085 0.915 19 C -0.195 4.195 20 N -0.555 5.555 21 Si 0.733 3.267 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.217 1.217 25 C -0.007 4.007 26 C -0.163 4.163 27 C -0.185 4.185 28 O 0.035 5.965 29 N -0.069 5.069 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.187 0.813 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.060 0.940 44 H 0.012 0.988 45 H 0.061 0.939 46 H 0.108 0.892 47 H 0.081 0.919 48 H 0.126 0.874 49 H 0.136 0.864 50 H 0.132 0.868 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.992 -12.887 -12.954 22.421 hybrid contribution 0.819 1.128 0.017 1.394 sum -12.173 -11.759 -12.938 21.303 Atomic orbital electron populations 1.20179 0.85770 1.03941 1.03435 1.23570 0.99089 0.88577 1.02547 1.22331 0.90834 1.01240 1.09446 1.22815 0.95492 0.83587 1.02776 1.19410 0.87668 0.95064 1.07618 1.18854 0.76849 0.87878 0.81970 1.90720 1.49453 1.36338 1.64007 1.48056 1.69769 1.08445 1.06236 1.21785 0.99952 0.86525 0.93050 1.21908 0.99204 0.99368 0.96513 1.21589 1.01401 0.92548 0.99298 1.22181 0.99330 0.98354 0.94279 0.90585 1.20786 0.91795 0.93425 0.90838 1.43897 1.16558 1.65515 1.06220 1.20869 0.92518 0.98608 0.85933 1.19251 0.86577 1.15105 1.17034 0.91492 1.25076 0.97451 0.97427 0.99540 1.70039 1.27907 1.30741 1.26827 0.86209 0.83615 0.79443 0.77471 1.20343 1.21728 1.21745 1.21773 0.99489 0.83647 0.95751 1.23207 0.98732 1.03475 0.90839 1.23289 0.94555 1.00061 1.00552 1.84799 1.21805 1.22000 1.67871 1.73856 0.89089 1.23766 1.20213 0.90107 0.89865 0.90454 0.81292 0.91760 0.90418 0.91225 0.91516 0.93250 0.89256 0.93756 0.94490 0.94919 0.94007 0.98803 0.93909 0.89247 0.91854 0.87360 0.86398 0.86812 0.86719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.47 36.00 0.38 -0.15 16 2 C 0.02 0.22 7.33 -82.10 -0.60 -0.39 16 3 C -0.22 -2.33 10.59 -39.38 -0.42 -2.75 16 4 C 0.02 0.19 5.57 -35.30 -0.20 -0.01 16 5 C -0.09 -1.03 1.30 -156.81 -0.20 -1.24 16 6 C 0.56 7.90 6.57 -10.98 -0.07 7.83 16 7 O -0.53 -9.19 16.11 5.56 0.09 -9.10 16 8 N -0.59 -8.12 2.98 -173.04 -0.52 -8.64 16 9 C 0.11 1.31 5.93 -3.72 -0.02 1.29 16 10 C -0.13 -1.79 6.08 -26.61 -0.16 -1.95 16 11 C -0.11 -1.81 4.78 -26.69 -0.13 -1.94 16 12 C -0.12 -2.09 2.53 -90.72 -0.23 -2.32 16 13 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 14 C 0.16 3.13 5.18 -4.04 -0.02 3.11 16 15 N -0.60 -14.51 2.75 -181.11 -0.50 -15.01 16 16 C 0.17 3.92 7.83 59.85 0.47 4.39 16 17 C -0.25 -6.74 9.67 -15.06 -0.15 -6.89 16 18 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 19 C 0.00 0.08 5.23 -17.43 -0.09 -0.01 16 20 N -0.91 -25.81 10.46 55.49 0.58 -25.23 16 21 Si 0.90 21.80 29.56 -169.99 -5.02 16.78 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 C 0.12 1.72 5.70 -3.94 -0.02 1.70 16 26 C -0.12 -1.17 9.76 -26.70 -0.26 -1.43 16 27 C -0.15 -1.33 9.01 -26.70 -0.24 -1.57 16 28 O 0.10 1.16 10.97 17.17 0.19 1.35 16 29 N -0.36 -4.37 12.07 33.42 0.40 -3.96 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.17 1.72 8.06 -52.49 -0.42 1.29 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.84 5.13 -51.93 -0.27 0.58 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 1.79 5.46 -51.93 -0.28 1.50 16 40 H 0.04 0.87 8.04 -51.92 -0.42 0.45 16 41 H 0.04 0.66 7.86 -51.93 -0.41 0.25 16 42 H 0.03 0.82 5.83 -51.93 -0.30 0.52 16 43 H 0.04 1.09 7.29 -51.93 -0.38 0.71 16 44 H -0.01 -0.14 7.83 -51.93 -0.41 -0.54 16 45 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 46 H 0.09 1.45 7.00 -51.93 -0.36 1.09 16 47 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.12 1.18 8.00 -51.93 -0.42 0.76 16 50 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 51 H 0.11 0.86 8.00 -51.92 -0.42 0.45 16 LS Contribution 403.94 15.07 6.09 6.09 Total: -1.00 -31.16 403.94 -8.93 -40.09 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -8.28 Total: -0.03 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -1.97 Total: -2.32 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -0.03 Total: -52.85 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.28 Total: -7.75 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.16 -8.93 -40.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480081035.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.832 kcal (2) G-P(sol) polarization free energy of solvation -31.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds