Wall clock time and date at job start Wed Apr 1 2020 04:30:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.41375 * 126.80406 * 2 1
4 4 C 1.35452 * 103.98789 * 179.97438 * 3 2 1
5 5 C 1.50701 * 126.77978 * 179.97438 * 4 3 2
6 6 C 1.50698 * 115.55145 * 29.59422 * 5 4 3
7 7 O 1.21278 * 120.00624 * 245.50785 * 6 5 4
8 8 N 1.34784 * 119.99709 * 65.50300 * 6 5 4
9 9 C 1.46924 * 120.62920 * 5.51638 * 8 6 5
10 10 C 1.53185 * 108.77499 * 126.36709 * 9 8 6
11 11 C 1.53040 * 109.31480 * 54.63507 * 10 9 8
12 12 C 1.53042 * 109.53659 * 298.63669 * 11 10 9
13 13 H 1.09001 * 109.49609 * 301.37536 * 12 11 10
14 14 C 1.53005 * 109.49617 * 181.31310 * 12 11 10
15 15 N 1.46497 * 109.47088 * 65.00064 * 14 12 11
16 16 C 1.46499 * 120.00230 * 269.99730 * 15 14 12
17 17 C 1.36936 * 119.99924 * 89.99703 * 15 14 12
18 18 H 1.08006 * 120.00440 * 24.82532 * 17 15 14
19 19 C 1.38815 * 119.99792 * 204.82027 * 17 15 14
20 20 N 1.31611 * 120.00214 * 5.98054 * 19 17 15
21 21 Si 1.86808 * 119.99563 * 185.97613 * 19 17 15
22 22 H 1.48497 * 109.47410 * 0.02562 * 21 19 17
23 23 H 1.48503 * 109.46804 * 120.00620 * 21 19 17
24 24 H 1.48498 * 109.46933 * 239.99733 * 21 19 17
25 25 C 1.46919 * 120.63102 * 185.23828 * 8 6 5
26 26 C 1.53001 * 117.49895 * 243.92720 * 5 4 3
27 27 C 1.52997 * 117.50106 * 175.26966 * 5 4 3
28 28 O 1.34042 * 106.44331 * 0.02562 * 4 3 2
29 29 N 1.20914 * 111.56907 * 359.70921 * 28 4 3
30 30 H 1.09005 * 109.47034 * 89.99595 * 1 2 3
31 31 H 1.09006 * 109.47305 * 330.00228 * 1 2 3
32 32 H 1.08996 * 109.47387 * 210.00133 * 1 2 3
33 33 H 1.07996 * 128.01092 * 359.96423 * 3 2 1
34 34 H 1.09002 * 109.58775 * 246.15703 * 9 8 6
35 35 H 1.09000 * 109.59144 * 6.43994 * 9 8 6
36 36 H 1.09006 * 109.50243 * 174.58453 * 10 9 8
37 37 H 1.09000 * 109.50053 * 294.68528 * 10 9 8
38 38 H 1.08998 * 109.45781 * 58.65444 * 11 10 9
39 39 H 1.08994 * 109.46553 * 178.61498 * 11 10 9
40 40 H 1.09010 * 109.46688 * 184.99948 * 14 12 11
41 41 H 1.08996 * 109.47319 * 304.99512 * 14 12 11
42 42 H 1.09003 * 109.47032 * 95.35000 * 16 15 14
43 43 H 1.08998 * 109.47441 * 215.35941 * 16 15 14
44 44 H 1.09003 * 109.46761 * 335.35779 * 16 15 14
45 45 H 0.97003 * 120.00342 * 179.97438 * 20 19 17
46 46 H 1.09005 * 109.58591 * 353.41606 * 25 8 6
47 47 H 1.08998 * 109.59105 * 113.84162 * 25 8 6
48 48 H 1.09001 * 117.49967 * 359.97438 * 26 5 4
49 49 H 1.08997 * 117.50070 * 145.01551 * 26 5 4
50 50 H 1.08998 * 117.50146 * 214.97639 * 27 5 4
51 51 H 1.09009 * 117.49684 * 359.97139 * 27 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3539 1.1320 0.0000
4 6 3.6025 0.6067 0.0006
5 6 4.9022 1.3694 0.0003
6 6 4.8644 2.7185 0.6708
7 8 5.0319 3.7258 0.0166
8 7 4.6443 2.8055 1.9977
9 6 4.5595 1.5933 2.8236
10 6 5.5489 1.7187 3.9863
11 6 5.2740 3.0180 4.7470
12 6 5.4753 4.2116 3.8106
13 1 6.4944 4.2030 3.4240
14 6 5.2321 5.5113 4.5805
15 7 6.2516 5.6599 5.6220
16 6 6.0174 5.1110 6.9599
17 6 7.4235 6.3119 5.3449
18 1 7.4602 7.0426 4.5505
19 6 8.5643 6.0336 6.0852
20 7 8.5521 5.0619 6.9728
21 14 10.1170 7.0383 5.8214
22 1 9.8714 8.0637 4.7757
23 1 10.4949 7.7080 7.0918
24 1 11.2187 6.1421 5.3876
25 6 4.4906 4.1146 2.6467
26 6 5.8136 1.2117 -1.2185
27 6 6.1960 0.5606 0.1130
28 8 3.4537 -0.7254 0.0003
29 7 2.2868 -1.0424 0.0054
30 1 -0.3633 0.0001 -1.0277
31 1 -0.3634 0.8900 0.5138
32 1 -0.3634 -0.8899 0.5138
33 1 2.0710 2.1742 -0.0005
34 1 3.5475 1.4876 3.2146
35 1 4.8108 0.7214 2.2197
36 1 5.4281 0.8703 4.6600
37 1 6.5671 1.7332 3.5977
38 1 4.2478 3.0135 5.1142
39 1 5.9606 3.0977 5.5897
40 1 5.2882 6.3562 3.8939
41 1 4.2444 5.4818 5.0404
42 1 6.4694 4.1216 7.0310
43 1 6.4636 5.7688 7.7058
44 1 4.9449 5.0341 7.1384
45 1 9.3494 4.8672 7.4899
46 1 4.6989 4.9061 1.9267
47 1 3.4729 4.2188 3.0230
48 1 5.4733 0.5559 -2.0199
49 1 6.3861 2.0835 -1.5351
50 1 7.0199 1.0043 0.6718
51 1 6.1070 -0.5233 0.1878
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001480081035.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:30:48
Heat of formation + Delta-G solvation = 76.740424 kcal
Electronic energy + Delta-G solvation = -31986.622029 eV
Core-core repulsion = 27891.102964 eV
Total energy + Delta-G solvation = -4095.519066 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.08 seconds
Orbital eigenvalues (eV)
-45.21316 -40.56949 -38.09454 -36.75050 -35.53304 -35.05799 -32.82241 -31.76090
-31.61820 -30.33007 -28.98883 -26.41005 -26.23288 -25.37950 -24.04070 -23.45698
-22.80941 -22.34790 -21.33444 -20.46524 -19.54724 -18.79376 -17.90260 -17.80165
-16.78253 -16.64136 -16.08176 -15.50690 -15.00723 -14.83291 -14.53291 -14.23802
-13.99368 -13.80987 -13.69228 -13.55037 -13.41023 -13.31229 -13.13488 -12.82680
-12.72496 -12.63272 -12.35888 -11.92052 -11.68970 -11.51767 -11.37552 -11.22221
-11.07987 -10.96951 -10.84635 -10.70994 -10.52077 -10.37639 -10.27172 -10.14463
-9.96699 -9.88126 -9.77389 -9.67194 -9.41940 -8.59880 -8.46586 -6.70568
-5.71449 -3.18903 1.11014 1.93456 2.15081 2.73368 3.03286 3.37723
3.41940 3.45452 3.47265 3.89640 3.93065 4.20628 4.42742 4.48272
4.50818 4.76206 4.92833 4.94040 5.14027 5.14984 5.16319 5.22500
5.27901 5.30722 5.31772 5.44207 5.47080 5.48293 5.49274 5.59085
5.71288 5.74586 5.77293 5.82208 5.86710 5.96931 6.09879 6.14818
6.20964 6.39751 6.52792 6.68108 6.72656 6.78335 6.97813 7.10689
7.38480 7.41216 7.77618 7.84007 7.97689 8.07772 8.42989 9.26665
9.88621 10.38198 11.33078
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.017162 B = 0.002740 C = 0.002599
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1631.087493 B =10215.541028 C =10771.830795
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 C 0.021 3.979
3 C -0.217 4.217
4 C 0.017 3.983
5 C -0.093 4.093
6 C 0.559 3.441
7 O -0.529 6.529
8 N -0.593 5.593
9 C 0.110 3.890
10 C -0.132 4.132
11 C -0.111 4.111
12 C -0.119 4.119
13 H 0.076 0.924
14 C 0.160 3.840
15 N -0.600 5.600
16 C 0.165 3.835
17 C -0.250 4.250
18 H 0.067 0.933
19 C 0.003 3.997
20 N -0.909 5.909
21 Si 0.902 3.098
22 H -0.278 1.278
23 H -0.290 1.290
24 H -0.290 1.290
25 C 0.115 3.885
26 C -0.125 4.125
27 C -0.147 4.147
28 O 0.101 5.899
29 N -0.364 5.364
30 H 0.080 0.920
31 H 0.083 0.917
32 H 0.077 0.923
33 H 0.170 0.830
34 H 0.064 0.936
35 H 0.077 0.923
36 H 0.069 0.931
37 H 0.066 0.934
38 H 0.049 0.951
39 H 0.089 0.911
40 H 0.044 0.956
41 H 0.037 0.963
42 H 0.033 0.967
43 H 0.041 0.959
44 H -0.007 1.007
45 H 0.251 0.749
46 H 0.089 0.911
47 H 0.063 0.937
48 H 0.108 0.892
49 H 0.118 0.882
50 H 0.114 0.886
51 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.969 -12.085 -12.776 21.851
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.138 4.138
3 C -0.239 4.239
4 C -0.047 4.047
5 C -0.098 4.098
6 C 0.344 3.656
7 O -0.405 6.405
8 N -0.325 5.325
9 C -0.013 4.013
10 C -0.170 4.170
11 C -0.148 4.148
12 C -0.141 4.141
13 H 0.094 0.906
14 C 0.032 3.968
15 N -0.322 5.322
16 C 0.021 3.979
17 C -0.380 4.380
18 H 0.085 0.915
19 C -0.195 4.195
20 N -0.555 5.555
21 Si 0.733 3.267
22 H -0.203 1.203
23 H -0.217 1.217
24 H -0.217 1.217
25 C -0.007 4.007
26 C -0.163 4.163
27 C -0.185 4.185
28 O 0.035 5.965
29 N -0.069 5.069
30 H 0.099 0.901
31 H 0.101 0.899
32 H 0.095 0.905
33 H 0.187 0.813
34 H 0.082 0.918
35 H 0.096 0.904
36 H 0.088 0.912
37 H 0.085 0.915
38 H 0.068 0.932
39 H 0.107 0.893
40 H 0.062 0.938
41 H 0.055 0.945
42 H 0.051 0.949
43 H 0.060 0.940
44 H 0.012 0.988
45 H 0.061 0.939
46 H 0.108 0.892
47 H 0.081 0.919
48 H 0.126 0.874
49 H 0.136 0.864
50 H 0.132 0.868
51 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges -12.992 -12.887 -12.954 22.421
hybrid contribution 0.819 1.128 0.017 1.394
sum -12.173 -11.759 -12.938 21.303
Atomic orbital electron populations
1.20179 0.85770 1.03941 1.03435 1.23570 0.99089 0.88577 1.02547
1.22331 0.90834 1.01240 1.09446 1.22815 0.95492 0.83587 1.02776
1.19410 0.87668 0.95064 1.07618 1.18854 0.76849 0.87878 0.81970
1.90720 1.49453 1.36338 1.64007 1.48056 1.69769 1.08445 1.06236
1.21785 0.99952 0.86525 0.93050 1.21908 0.99204 0.99368 0.96513
1.21589 1.01401 0.92548 0.99298 1.22181 0.99330 0.98354 0.94279
0.90585 1.20786 0.91795 0.93425 0.90838 1.43897 1.16558 1.65515
1.06220 1.20869 0.92518 0.98608 0.85933 1.19251 0.86577 1.15105
1.17034 0.91492 1.25076 0.97451 0.97427 0.99540 1.70039 1.27907
1.30741 1.26827 0.86209 0.83615 0.79443 0.77471 1.20343 1.21728
1.21745 1.21773 0.99489 0.83647 0.95751 1.23207 0.98732 1.03475
0.90839 1.23289 0.94555 1.00061 1.00552 1.84799 1.21805 1.22000
1.67871 1.73856 0.89089 1.23766 1.20213 0.90107 0.89865 0.90454
0.81292 0.91760 0.90418 0.91225 0.91516 0.93250 0.89256 0.93756
0.94490 0.94919 0.94007 0.98803 0.93909 0.89247 0.91854 0.87360
0.86398 0.86812 0.86719
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.53 10.47 36.00 0.38 -0.15 16
2 C 0.02 0.22 7.33 -82.10 -0.60 -0.39 16
3 C -0.22 -2.33 10.59 -39.38 -0.42 -2.75 16
4 C 0.02 0.19 5.57 -35.30 -0.20 -0.01 16
5 C -0.09 -1.03 1.30 -156.81 -0.20 -1.24 16
6 C 0.56 7.90 6.57 -10.98 -0.07 7.83 16
7 O -0.53 -9.19 16.11 5.56 0.09 -9.10 16
8 N -0.59 -8.12 2.98 -173.04 -0.52 -8.64 16
9 C 0.11 1.31 5.93 -3.72 -0.02 1.29 16
10 C -0.13 -1.79 6.08 -26.61 -0.16 -1.95 16
11 C -0.11 -1.81 4.78 -26.69 -0.13 -1.94 16
12 C -0.12 -2.09 2.53 -90.72 -0.23 -2.32 16
13 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16
14 C 0.16 3.13 5.18 -4.04 -0.02 3.11 16
15 N -0.60 -14.51 2.75 -181.11 -0.50 -15.01 16
16 C 0.17 3.92 7.83 59.85 0.47 4.39 16
17 C -0.25 -6.74 9.67 -15.06 -0.15 -6.89 16
18 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16
19 C 0.00 0.08 5.23 -17.43 -0.09 -0.01 16
20 N -0.91 -25.81 10.46 55.49 0.58 -25.23 16
21 Si 0.90 21.80 29.56 -169.99 -5.02 16.78 16
22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
23 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16
24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16
25 C 0.12 1.72 5.70 -3.94 -0.02 1.70 16
26 C -0.12 -1.17 9.76 -26.70 -0.26 -1.43 16
27 C -0.15 -1.33 9.01 -26.70 -0.24 -1.57 16
28 O 0.10 1.16 10.97 17.17 0.19 1.35 16
29 N -0.36 -4.37 12.07 33.42 0.40 -3.96 16
30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16
31 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16
32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16
33 H 0.17 1.72 8.06 -52.49 -0.42 1.29 16
34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
35 H 0.08 0.84 5.13 -51.93 -0.27 0.58 16
36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
37 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16
38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
39 H 0.09 1.79 5.46 -51.93 -0.28 1.50 16
40 H 0.04 0.87 8.04 -51.92 -0.42 0.45 16
41 H 0.04 0.66 7.86 -51.93 -0.41 0.25 16
42 H 0.03 0.82 5.83 -51.93 -0.30 0.52 16
43 H 0.04 1.09 7.29 -51.93 -0.38 0.71 16
44 H -0.01 -0.14 7.83 -51.93 -0.41 -0.54 16
45 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16
46 H 0.09 1.45 7.00 -51.93 -0.36 1.09 16
47 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
48 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16
49 H 0.12 1.18 8.00 -51.93 -0.42 0.76 16
50 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16
51 H 0.11 0.86 8.00 -51.92 -0.42 0.45 16
LS Contribution 403.94 15.07 6.09 6.09
Total: -1.00 -31.16 403.94 -8.93 -40.09
By element:
Atomic # 1 Polarization: 8.25 SS G_CDS: -8.28 Total: -0.03 kcal
Atomic # 6 Polarization: -0.36 SS G_CDS: -1.97 Total: -2.32 kcal
Atomic # 7 Polarization: -52.82 SS G_CDS: -0.03 Total: -52.85 kcal
Atomic # 8 Polarization: -8.03 SS G_CDS: 0.28 Total: -7.75 kcal
Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal
Total LS contribution 6.09 Total: 6.09 kcal
Total: -31.16 -8.93 -40.09 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001480081035.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 116.832 kcal
(2) G-P(sol) polarization free energy of solvation -31.159 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.673 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.091 kcal
(6) G-S(sol) free energy of system = (1) + (5) 76.740 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.08 seconds