Wall clock time and date at job start Wed Apr 1 2020 04:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30007 * 127.33578 * 2 1 4 4 O 1.20662 * 112.30528 * 180.27119 * 3 2 1 5 5 C 1.33494 * 113.15186 * 359.73699 * 4 3 2 6 6 C 1.50700 * 126.82808 * 180.02562 * 5 4 3 7 7 C 1.52994 * 117.50042 * 8.73987 * 6 5 4 8 8 C 1.53003 * 117.49630 * 300.08308 * 6 5 4 9 9 C 1.37360 * 106.34287 * 359.97438 * 5 4 3 10 10 C 1.47396 * 128.56507 * 179.97438 * 9 5 4 11 11 O 1.21605 * 120.00534 * 89.99562 * 10 9 5 12 12 N 1.34777 * 119.99780 * 269.99915 * 10 9 5 13 13 C 1.46494 * 120.00106 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.47008 * 324.99143 * 13 12 10 15 15 C 1.53003 * 109.47672 * 84.99461 * 13 12 10 16 16 C 1.52994 * 109.46945 * 59.99777 * 15 13 12 17 17 C 1.53005 * 109.47099 * 60.00218 * 16 15 13 18 18 C 1.52996 * 109.47324 * 299.99749 * 17 16 15 19 19 C 1.53004 * 109.47171 * 204.99747 * 13 12 10 20 20 H 1.08999 * 109.47217 * 179.97438 * 19 13 12 21 21 C 1.52996 * 109.47336 * 59.99365 * 19 13 12 22 22 N 1.46498 * 109.47059 * 175.00083 * 21 19 13 23 23 C 1.36943 * 119.99752 * 179.72430 * 22 21 19 24 24 H 1.08002 * 119.99793 * 0.27665 * 23 22 21 25 25 C 1.38811 * 120.00012 * 180.27737 * 23 22 21 26 26 N 1.31624 * 119.99698 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00072 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.47159 * 0.02562 * 27 25 23 29 29 H 1.48505 * 109.47290 * 120.00044 * 27 25 23 30 30 H 1.48503 * 109.47163 * 240.00049 * 27 25 23 31 31 H 1.09001 * 109.47306 * 270.14737 * 1 2 3 32 32 H 1.09000 * 109.47181 * 30.15198 * 1 2 3 33 33 H 1.09008 * 109.46820 * 150.14829 * 1 2 3 34 34 H 1.08994 * 115.55378 * 154.41609 * 6 5 4 35 35 H 1.09011 * 117.50129 * 0.02562 * 7 6 5 36 36 H 1.09000 * 117.50451 * 145.02071 * 7 6 5 37 37 H 1.09003 * 117.49491 * 214.97931 * 8 6 5 38 38 H 1.08997 * 117.49877 * 359.97112 * 8 6 5 39 39 H 0.97000 * 120.00211 * 359.97438 * 12 10 9 40 40 H 1.08994 * 109.46929 * 180.02562 * 15 13 12 41 41 H 1.08995 * 109.46731 * 300.00266 * 15 13 12 42 42 H 1.09001 * 109.47328 * 180.02562 * 16 15 13 43 43 H 1.09000 * 109.47864 * 300.00473 * 16 15 13 44 44 H 1.08999 * 109.46900 * 60.00147 * 17 16 15 45 45 H 1.09005 * 109.47165 * 179.97438 * 17 16 15 46 46 H 1.09000 * 109.47017 * 300.00357 * 18 17 16 47 47 H 1.08995 * 109.47011 * 179.97438 * 18 17 16 48 48 H 1.09004 * 109.47066 * 55.00351 * 21 19 13 49 49 H 1.08994 * 109.46974 * 295.00498 * 21 19 13 50 50 H 0.97001 * 120.00384 * 0.02562 * 22 21 19 51 51 H 0.96999 * 119.99739 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 -0.0053 5 6 3.6494 -0.6008 -0.0042 6 6 4.9712 -1.3246 -0.0090 7 6 6.2360 -0.4872 0.1902 8 6 5.9122 -1.0690 -1.1881 9 6 2.3991 -1.1696 0.0035 10 6 2.0401 -2.5992 0.0073 11 8 1.8979 -3.1877 1.0619 12 7 1.8694 -3.2541 -1.1582 13 6 1.5119 -4.6748 -1.1546 14 1 1.9996 -5.1700 -0.3149 15 6 -0.0054 -4.8188 -1.0204 16 6 -0.6898 -4.1237 -2.1991 17 6 -0.2301 -4.7686 -3.5083 18 6 1.2872 -4.6247 -3.6425 19 6 1.9716 -5.3197 -2.4637 20 1 1.7061 -6.3769 -2.4608 21 6 3.4889 -5.1758 -2.5979 22 7 3.9441 -5.8958 -3.7898 23 6 5.2733 -5.9032 -4.1192 24 1 5.9865 -5.3820 -3.4978 25 6 5.7040 -6.5805 -5.2517 26 7 4.8347 -7.2153 -6.0092 27 14 7.5172 -6.5912 -5.7006 28 1 8.2808 -5.8103 -4.6946 29 1 8.0138 -7.9906 -5.7213 30 1 7.6985 -5.9818 -7.0427 31 1 -0.3634 0.0026 1.0277 32 1 -0.3633 0.8886 -0.5162 33 1 -0.3633 -0.8914 -0.5116 34 1 4.9595 -2.3277 0.4172 35 1 6.1121 0.5874 0.3253 36 1 7.0565 -0.9394 0.7473 37 1 6.5198 -1.9039 -1.5372 38 1 5.5751 -0.3777 -1.9604 39 1 1.9825 -2.7847 -1.9995 40 1 -0.2711 -5.8758 -1.0173 41 1 -0.3328 -4.3593 -0.0878 42 1 -1.7707 -4.2258 -2.1033 43 1 -0.4239 -3.0666 -2.2019 44 1 -0.4960 -5.8256 -3.5056 45 1 -0.7180 -4.2737 -4.3480 46 1 1.5530 -3.5676 -3.6451 47 1 1.6146 -5.0845 -4.5749 48 1 3.9729 -5.5927 -1.7147 49 1 3.7470 -4.1209 -2.6899 50 1 3.3035 -6.3636 -4.3481 51 1 5.1356 -7.6889 -6.8004 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483438937.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:09 Heat of formation + Delta-G solvation = 40.885405 kcal Electronic energy + Delta-G solvation = -32029.186838 eV Core-core repulsion = 27932.112982 eV Total energy + Delta-G solvation = -4097.073856 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.03126 -40.29543 -38.19828 -37.55613 -34.73936 -34.68920 -33.64447 -31.99857 -31.85437 -29.92344 -29.45692 -28.97144 -25.51553 -24.78794 -23.73985 -23.03258 -22.61603 -22.24195 -21.22789 -20.57234 -19.72990 -18.99584 -18.21311 -17.86462 -17.16034 -16.68597 -16.12752 -15.73869 -15.29562 -14.85704 -14.69884 -14.51133 -14.08935 -13.82675 -13.63775 -13.56958 -13.53462 -13.31589 -13.17926 -13.10276 -12.77523 -12.28399 -12.12592 -12.03484 -11.79935 -11.72878 -11.60756 -11.45399 -11.35443 -10.93458 -10.92328 -10.76998 -10.68559 -10.42491 -10.22897 -10.19085 -10.03951 -10.00934 -9.89797 -9.66401 -9.32497 -8.99899 -8.88176 -6.94605 -5.79996 -3.08215 1.09498 1.73092 2.37009 2.59906 3.21599 3.40319 3.45952 3.48221 3.56094 3.88611 4.00703 4.44804 4.52773 4.55793 4.66085 4.73044 4.83932 4.85404 4.89201 5.03031 5.19854 5.21029 5.23397 5.29601 5.35587 5.37665 5.44247 5.53829 5.56661 5.59633 5.63662 5.67545 5.70949 5.77595 5.78877 5.80012 5.89105 6.00535 6.10124 6.11948 6.20377 6.23395 6.33688 6.44618 6.51290 6.64221 6.76400 6.83551 7.46630 7.66876 8.03992 8.13135 8.39021 9.50490 10.08206 10.42817 11.42940 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008852 B = 0.003884 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3162.228988 B = 7207.678847 C = 9555.786493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.055 3.945 3 N -0.357 5.357 4 O 0.095 5.905 5 C 0.058 3.942 6 C -0.098 4.098 7 C -0.163 4.163 8 C -0.151 4.151 9 C -0.247 4.247 10 C 0.602 3.398 11 O -0.530 6.530 12 N -0.700 5.700 13 C 0.154 3.846 14 H 0.090 0.910 15 C -0.129 4.129 16 C -0.116 4.116 17 C -0.121 4.121 18 C -0.110 4.110 19 C -0.102 4.102 20 H 0.087 0.913 21 C 0.160 3.840 22 N -0.731 5.731 23 C -0.237 4.237 24 H 0.069 0.931 25 C -0.013 4.013 26 N -0.933 5.933 27 Si 0.904 3.096 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.141 0.859 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.403 0.597 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.054 0.946 47 H 0.079 0.921 48 H 0.017 0.983 49 H 0.018 0.982 50 H 0.384 0.616 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.777 13.053 10.918 19.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.107 4.107 3 N -0.064 5.064 4 O 0.034 5.966 5 C -0.006 4.006 6 C -0.117 4.117 7 C -0.199 4.199 8 C -0.188 4.188 9 C -0.254 4.254 10 C 0.385 3.615 11 O -0.406 6.406 12 N -0.352 5.352 13 C 0.050 3.950 14 H 0.108 0.892 15 C -0.167 4.167 16 C -0.153 4.153 17 C -0.158 4.158 18 C -0.148 4.148 19 C -0.121 4.121 20 H 0.105 0.895 21 C 0.033 3.967 22 N -0.375 5.375 23 C -0.368 4.368 24 H 0.087 0.913 25 C -0.209 4.209 26 N -0.582 5.582 27 Si 0.736 3.264 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.158 0.842 35 H 0.122 0.878 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.121 0.879 39 H 0.239 0.761 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.098 0.902 48 H 0.035 0.965 49 H 0.036 0.964 50 H 0.218 0.782 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.884 13.960 11.677 20.252 hybrid contribution 0.741 -0.780 -0.882 1.391 sum -8.143 13.180 10.794 18.882 Atomic orbital electron populations 1.20216 0.85177 1.04094 1.03888 1.24704 0.98489 0.86537 1.01018 1.73611 0.89061 1.23284 1.20423 1.84498 1.21497 1.22475 1.68155 1.23584 0.95645 0.83300 0.98034 1.20572 0.83951 0.99576 1.07616 1.23101 0.96710 1.00025 1.00110 1.23185 1.00326 1.04030 0.91294 1.21843 0.92437 0.95475 1.15643 1.16809 0.76691 0.83729 0.84238 1.90811 1.50783 1.67867 1.31184 1.46095 1.69428 1.11592 1.08078 1.21039 0.94774 0.80019 0.99206 0.89225 1.21909 0.94850 1.01439 0.98525 1.21498 0.99326 0.99676 0.94845 1.21585 0.96423 1.01020 0.96807 1.21532 0.93828 1.00116 0.99338 1.21638 0.97171 1.00409 0.92881 0.89491 1.20636 0.89946 0.95328 0.90824 1.42369 1.06295 1.61790 1.27047 1.19238 0.84573 1.26794 1.06217 0.91280 1.24715 0.97557 1.00657 0.97978 1.69663 1.32537 1.38644 1.17319 0.86157 0.85067 0.77250 0.77952 1.20589 1.21892 1.21901 0.89644 0.89931 0.89807 0.84158 0.87766 0.87337 0.86665 0.87925 0.76055 0.90819 0.91697 0.92382 0.92394 0.91835 0.92255 0.92778 0.90198 0.96486 0.96392 0.78218 0.93588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.49 36.01 0.38 -0.30 16 2 C 0.05 0.66 7.59 -79.77 -0.61 0.06 16 3 N -0.36 -4.65 12.01 34.78 0.42 -4.23 16 4 O 0.09 1.19 10.86 18.65 0.20 1.39 16 5 C 0.06 0.70 7.00 -34.63 -0.24 0.46 16 6 C -0.10 -1.05 6.15 -91.77 -0.56 -1.61 16 7 C -0.16 -1.39 10.18 -26.70 -0.27 -1.66 16 8 C -0.15 -1.47 10.24 -26.69 -0.27 -1.74 16 9 C -0.25 -3.19 6.24 -102.89 -0.64 -3.84 16 10 C 0.60 8.33 7.60 -12.53 -0.10 8.23 16 11 O -0.53 -8.97 16.77 5.27 0.09 -8.88 16 12 N -0.70 -8.68 3.61 -54.89 -0.20 -8.88 16 13 C 0.15 1.99 2.23 -67.93 -0.15 1.84 16 14 H 0.09 1.30 7.58 -51.93 -0.39 0.90 16 15 C -0.13 -1.44 5.60 -26.73 -0.15 -1.59 16 16 C -0.12 -1.17 5.77 -26.73 -0.15 -1.33 16 17 C -0.12 -1.36 5.92 -26.73 -0.16 -1.52 16 18 C -0.11 -1.51 4.91 -26.73 -0.13 -1.64 16 19 C -0.10 -1.48 2.02 -90.62 -0.18 -1.67 16 20 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 21 C 0.16 2.99 5.42 -4.04 -0.02 2.97 16 22 N -0.73 -17.43 5.33 -59.91 -0.32 -17.74 16 23 C -0.24 -6.37 9.99 -15.06 -0.15 -6.52 16 24 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 25 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 26 N -0.93 -27.41 13.06 55.49 0.72 -26.69 16 27 Si 0.90 21.86 29.55 -169.99 -5.02 16.84 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 30 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.68 8.14 -51.92 -0.42 0.25 16 34 H 0.14 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.10 0.83 8.02 -51.92 -0.42 0.42 16 36 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.40 4.75 6.65 -40.82 -0.27 4.48 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.58 7.60 -51.93 -0.39 0.18 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.71 6.50 -51.93 -0.34 0.37 16 47 H 0.08 1.32 7.18 -51.93 -0.37 0.95 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.02 0.34 7.61 -51.93 -0.40 -0.06 16 50 H 0.38 9.63 6.85 -40.82 -0.28 9.35 16 51 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 413.48 15.07 6.23 6.23 Total: -1.00 -31.60 413.48 -9.72 -41.31 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -8.33 Total: 10.97 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -3.51 Total: -10.33 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 0.62 Total: -57.54 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: 0.29 Total: -7.49 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -31.60 -9.72 -41.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483438937.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.200 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds