Wall clock time and date at job start Wed Apr 1 2020 04:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30007 * 127.33578 * 2 1 4 4 O 1.20662 * 112.30528 * 180.27119 * 3 2 1 5 5 C 1.33494 * 113.15186 * 359.73699 * 4 3 2 6 6 C 1.50700 * 126.82808 * 180.02562 * 5 4 3 7 7 C 1.52994 * 117.50042 * 8.73987 * 6 5 4 8 8 C 1.53003 * 117.49630 * 300.08308 * 6 5 4 9 9 C 1.37360 * 106.34287 * 359.97438 * 5 4 3 10 10 C 1.47396 * 128.56507 * 179.97438 * 9 5 4 11 11 O 1.21605 * 120.00534 * 89.99562 * 10 9 5 12 12 N 1.34777 * 119.99780 * 269.99915 * 10 9 5 13 13 C 1.46494 * 120.00106 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.47008 * 324.99143 * 13 12 10 15 15 C 1.53003 * 109.47672 * 84.99461 * 13 12 10 16 16 C 1.52994 * 109.46945 * 59.99777 * 15 13 12 17 17 C 1.53005 * 109.47099 * 60.00218 * 16 15 13 18 18 C 1.52996 * 109.47324 * 299.99749 * 17 16 15 19 19 C 1.53004 * 109.47171 * 204.99747 * 13 12 10 20 20 H 1.08999 * 109.47217 * 179.97438 * 19 13 12 21 21 C 1.52996 * 109.47336 * 59.99365 * 19 13 12 22 22 N 1.46498 * 109.47059 * 175.00083 * 21 19 13 23 23 C 1.36943 * 119.99752 * 179.72430 * 22 21 19 24 24 H 1.08002 * 119.99793 * 0.27665 * 23 22 21 25 25 C 1.38811 * 120.00012 * 180.27737 * 23 22 21 26 26 N 1.31624 * 119.99698 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00072 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.47159 * 0.02562 * 27 25 23 29 29 H 1.48505 * 109.47290 * 120.00044 * 27 25 23 30 30 H 1.48503 * 109.47163 * 240.00049 * 27 25 23 31 31 H 1.09001 * 109.47306 * 270.14737 * 1 2 3 32 32 H 1.09000 * 109.47181 * 30.15198 * 1 2 3 33 33 H 1.09008 * 109.46820 * 150.14829 * 1 2 3 34 34 H 1.08994 * 115.55378 * 154.41609 * 6 5 4 35 35 H 1.09011 * 117.50129 * 0.02562 * 7 6 5 36 36 H 1.09000 * 117.50451 * 145.02071 * 7 6 5 37 37 H 1.09003 * 117.49491 * 214.97931 * 8 6 5 38 38 H 1.08997 * 117.49877 * 359.97112 * 8 6 5 39 39 H 0.97000 * 120.00211 * 359.97438 * 12 10 9 40 40 H 1.08994 * 109.46929 * 180.02562 * 15 13 12 41 41 H 1.08995 * 109.46731 * 300.00266 * 15 13 12 42 42 H 1.09001 * 109.47328 * 180.02562 * 16 15 13 43 43 H 1.09000 * 109.47864 * 300.00473 * 16 15 13 44 44 H 1.08999 * 109.46900 * 60.00147 * 17 16 15 45 45 H 1.09005 * 109.47165 * 179.97438 * 17 16 15 46 46 H 1.09000 * 109.47017 * 300.00357 * 18 17 16 47 47 H 1.08995 * 109.47011 * 179.97438 * 18 17 16 48 48 H 1.09004 * 109.47066 * 55.00351 * 21 19 13 49 49 H 1.08994 * 109.46974 * 295.00498 * 21 19 13 50 50 H 0.97001 * 120.00384 * 0.02562 * 22 21 19 51 51 H 0.96999 * 119.99739 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 -0.0053 5 6 3.6494 -0.6008 -0.0042 6 6 4.9712 -1.3246 -0.0090 7 6 6.2360 -0.4872 0.1902 8 6 5.9122 -1.0690 -1.1881 9 6 2.3991 -1.1696 0.0035 10 6 2.0401 -2.5992 0.0073 11 8 1.8979 -3.1877 1.0619 12 7 1.8694 -3.2541 -1.1582 13 6 1.5119 -4.6748 -1.1546 14 1 1.9996 -5.1700 -0.3149 15 6 -0.0054 -4.8188 -1.0204 16 6 -0.6898 -4.1237 -2.1991 17 6 -0.2301 -4.7686 -3.5083 18 6 1.2872 -4.6247 -3.6425 19 6 1.9716 -5.3197 -2.4637 20 1 1.7061 -6.3769 -2.4608 21 6 3.4889 -5.1758 -2.5979 22 7 3.9441 -5.8958 -3.7898 23 6 5.2733 -5.9032 -4.1192 24 1 5.9865 -5.3820 -3.4978 25 6 5.7040 -6.5805 -5.2517 26 7 4.8347 -7.2153 -6.0092 27 14 7.5172 -6.5912 -5.7006 28 1 8.2808 -5.8103 -4.6946 29 1 8.0138 -7.9906 -5.7213 30 1 7.6985 -5.9818 -7.0427 31 1 -0.3634 0.0026 1.0277 32 1 -0.3633 0.8886 -0.5162 33 1 -0.3633 -0.8914 -0.5116 34 1 4.9595 -2.3277 0.4172 35 1 6.1121 0.5874 0.3253 36 1 7.0565 -0.9394 0.7473 37 1 6.5198 -1.9039 -1.5372 38 1 5.5751 -0.3777 -1.9604 39 1 1.9825 -2.7847 -1.9995 40 1 -0.2711 -5.8758 -1.0173 41 1 -0.3328 -4.3593 -0.0878 42 1 -1.7707 -4.2258 -2.1033 43 1 -0.4239 -3.0666 -2.2019 44 1 -0.4960 -5.8256 -3.5056 45 1 -0.7180 -4.2737 -4.3480 46 1 1.5530 -3.5676 -3.6451 47 1 1.6146 -5.0845 -4.5749 48 1 3.9729 -5.5927 -1.7147 49 1 3.7470 -4.1209 -2.6899 50 1 3.3035 -6.3636 -4.3481 51 1 5.1356 -7.6889 -6.8004 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483438937.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:08 Heat of formation + Delta-G solvation = 23.695309 kcal Electronic energy + Delta-G solvation = -32029.932256 eV Core-core repulsion = 27932.112982 eV Total energy + Delta-G solvation = -4097.819274 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.97778 -41.42019 -39.34888 -38.37413 -36.43657 -35.66430 -34.70590 -33.69001 -32.84033 -31.22877 -30.78949 -29.76590 -27.04999 -25.92313 -24.67388 -24.59785 -23.40231 -23.30733 -22.29351 -21.85036 -20.64493 -20.06422 -19.42104 -18.93117 -18.80586 -17.65386 -17.11125 -16.77885 -16.72330 -16.21088 -15.96423 -15.59123 -15.29298 -15.08151 -15.01170 -14.73763 -14.55489 -14.36675 -14.31303 -14.05130 -13.93009 -13.41775 -13.13934 -13.08407 -12.98392 -12.87132 -12.73367 -12.57631 -12.54049 -12.45525 -12.21349 -12.06704 -11.90852 -11.82617 -11.47869 -11.45406 -11.30488 -11.18584 -11.01967 -10.99465 -10.84393 -10.26020 -10.08540 -8.95930 -7.92834 -5.20476 0.14173 0.79896 1.28264 1.48500 1.49226 1.58587 1.63455 2.18768 2.57326 2.76115 3.03686 3.12295 3.41375 3.53709 3.59662 3.69896 3.80320 3.84743 3.86505 3.92090 4.09832 4.15531 4.24686 4.37984 4.43626 4.47990 4.49046 4.53262 4.56637 4.58882 4.65977 4.69657 4.72579 4.75394 4.89167 4.92976 5.00850 5.03250 5.06430 5.10001 5.16371 5.18680 5.28160 5.32871 5.33629 5.43821 5.50337 5.54085 5.59570 6.29424 6.39187 7.04428 7.09558 7.36855 8.12442 8.36351 9.30756 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008852 B = 0.003884 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3162.228988 B = 7207.678847 C = 9555.786493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.059 3.941 3 N -0.374 5.374 4 O 0.090 5.910 5 C 0.063 3.937 6 C -0.116 4.116 7 C -0.143 4.143 8 C -0.152 4.152 9 C -0.269 4.269 10 C 0.610 3.390 11 O -0.563 6.563 12 N -0.690 5.690 13 C 0.161 3.839 14 H 0.074 0.926 15 C -0.123 4.123 16 C -0.109 4.109 17 C -0.115 4.115 18 C -0.105 4.105 19 C -0.089 4.089 20 H 0.081 0.919 21 C 0.162 3.838 22 N -0.740 5.740 23 C -0.239 4.239 24 H 0.073 0.927 25 C -0.072 4.072 26 N -0.967 5.967 27 Si 0.967 3.033 28 H -0.266 1.266 29 H -0.296 1.296 30 H -0.294 1.294 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.132 0.868 35 H 0.112 0.888 36 H 0.125 0.875 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.408 0.592 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.060 0.940 47 H 0.048 0.952 48 H 0.007 0.993 49 H 0.023 0.977 50 H 0.375 0.625 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.320 14.326 11.419 20.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.104 4.104 3 N -0.083 5.083 4 O 0.031 5.969 5 C 0.000 4.000 6 C -0.135 4.135 7 C -0.179 4.179 8 C -0.190 4.190 9 C -0.276 4.276 10 C 0.395 3.605 11 O -0.442 6.442 12 N -0.341 5.341 13 C 0.057 3.943 14 H 0.092 0.908 15 C -0.161 4.161 16 C -0.146 4.146 17 C -0.152 4.152 18 C -0.143 4.143 19 C -0.108 4.108 20 H 0.099 0.901 21 C 0.036 3.964 22 N -0.383 5.383 23 C -0.371 4.371 24 H 0.091 0.909 25 C -0.264 4.264 26 N -0.619 5.619 27 Si 0.796 3.204 28 H -0.190 1.190 29 H -0.224 1.224 30 H -0.221 1.221 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.150 0.850 35 H 0.131 0.869 36 H 0.143 0.857 37 H 0.131 0.869 38 H 0.122 0.878 39 H 0.245 0.755 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.067 0.933 48 H 0.025 0.975 49 H 0.041 0.959 50 H 0.208 0.792 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.415 15.263 12.195 21.687 hybrid contribution 0.925 -1.164 -0.991 1.787 sum -8.490 14.099 11.204 19.909 Atomic orbital electron populations 1.20390 0.82995 1.05297 1.04822 1.25200 0.99818 0.85755 0.99608 1.73600 0.89279 1.23777 1.21617 1.84480 1.21543 1.22448 1.68392 1.23837 0.96059 0.83280 0.96820 1.20608 0.84268 0.99664 1.08992 1.23226 0.95530 1.00276 0.98889 1.23196 0.99908 1.04150 0.91706 1.21844 0.93215 0.95202 1.17319 1.16836 0.75910 0.83962 0.83825 1.90793 1.52451 1.68684 1.32313 1.46011 1.68801 1.11291 1.08032 1.20917 0.96247 0.79917 0.97265 0.90832 1.21864 0.92966 1.02214 0.99082 1.21461 1.00358 0.99559 0.93247 1.21535 0.94157 1.01436 0.98073 1.21449 0.95820 0.99871 0.97136 1.21470 0.94317 1.00560 0.94436 0.90070 1.20739 0.92731 0.94615 0.88364 1.42541 1.05357 1.62116 1.28266 1.19616 0.85962 1.25681 1.05857 0.90863 1.25468 1.01439 1.01146 0.98379 1.69808 1.34270 1.39978 1.17798 0.85170 0.80661 0.76896 0.77645 1.18984 1.22356 1.22107 0.88744 0.88416 0.88883 0.84989 0.86942 0.85695 0.86938 0.87833 0.75488 0.90049 0.91792 0.90357 0.91871 0.91836 0.91076 0.92142 0.93287 0.97497 0.95866 0.79190 0.94112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 10.49 71.24 0.75 -0.46 16 2 C 0.06 1.34 7.59 45.16 0.34 1.69 16 3 N -0.37 -9.36 12.01 -44.78 -0.54 -9.90 16 4 O 0.09 2.18 10.86 76.98 0.84 3.02 16 5 C 0.06 1.52 7.00 25.48 0.18 1.69 16 6 C -0.12 -2.42 6.15 -11.54 -0.07 -2.49 16 7 C -0.14 -2.22 10.18 30.61 0.31 -1.90 16 8 C -0.15 -2.83 10.24 30.62 0.31 -2.52 16 9 C -0.27 -6.77 6.24 -18.74 -0.12 -6.89 16 10 C 0.61 16.55 7.60 86.65 0.66 17.21 16 11 O -0.56 -18.97 16.77 -4.05 -0.07 -19.04 16 12 N -0.69 -16.55 3.61 -445.83 -1.61 -18.16 16 13 C 0.16 4.04 2.23 44.99 0.10 4.14 16 14 H 0.07 2.13 7.58 -2.39 -0.02 2.11 16 15 C -0.12 -2.52 5.60 30.59 0.17 -2.35 16 16 C -0.11 -1.90 5.77 30.59 0.18 -1.72 16 17 C -0.11 -2.35 5.92 30.59 0.18 -2.17 16 18 C -0.10 -2.81 4.91 30.60 0.15 -2.66 16 19 C -0.09 -2.56 2.02 -10.79 -0.02 -2.59 16 20 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 21 C 0.16 6.09 5.42 86.38 0.47 6.56 16 22 N -0.74 -35.79 5.33 -343.46 -1.83 -37.62 16 23 C -0.24 -12.92 9.99 84.03 0.84 -12.08 16 24 H 0.07 3.82 7.83 -2.91 -0.02 3.79 16 25 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 26 N -0.97 -57.75 13.06 21.65 0.28 -57.46 16 27 Si 0.97 45.06 29.55 68.60 2.03 47.09 16 28 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 29 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 30 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 31 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.13 2.96 8.14 -2.39 -0.02 2.94 16 35 H 0.11 1.59 8.02 -2.38 -0.02 1.57 16 36 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.41 9.16 6.65 -92.71 -0.62 8.54 16 40 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.06 1.06 7.60 -2.39 -0.02 1.05 16 44 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 46 H 0.06 1.52 6.50 -2.39 -0.02 1.50 16 47 H 0.05 1.63 7.18 -2.39 -0.02 1.62 16 48 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 49 H 0.02 0.86 7.61 -2.39 -0.02 0.84 16 50 H 0.38 19.30 6.85 -92.71 -0.63 18.67 16 51 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -67.89 413.48 3.69 -64.20 By element: Atomic # 1 Polarization: 38.26 SS G_CDS: -0.30 Total: 37.96 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: 4.90 Total: -10.08 kcal Atomic # 7 Polarization: -119.44 SS G_CDS: -3.70 Total: -123.14 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: 0.77 Total: -16.02 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -67.89 3.69 -64.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483438937.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.891 kcal (2) G-P(sol) polarization free energy of solvation -67.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds