Wall clock time and date at job start Wed Apr 1 2020 04:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30010 * 127.33231 * 2 1 4 4 O 1.20659 * 112.30263 * 180.27536 * 3 2 1 5 5 C 1.33491 * 113.15508 * 359.73256 * 4 3 2 6 6 C 1.50699 * 126.82924 * 179.97438 * 5 4 3 7 7 C 1.52991 * 117.50053 * 8.74961 * 6 5 4 8 8 C 1.53002 * 117.50120 * 300.08789 * 6 5 4 9 9 C 1.37360 * 106.34256 * 0.02562 * 5 4 3 10 10 C 1.47396 * 128.56604 * 179.97438 * 9 5 4 11 11 O 1.21610 * 120.00137 * 90.00287 * 10 9 5 12 12 N 1.34774 * 120.00073 * 269.99785 * 10 9 5 13 13 C 1.46506 * 120.00251 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.46566 * 34.99635 * 13 12 10 15 15 C 1.52992 * 109.46999 * 275.00369 * 13 12 10 16 16 C 1.53002 * 109.47106 * 299.99813 * 15 13 12 17 17 C 1.53002 * 109.47128 * 300.00123 * 16 15 13 18 18 C 1.52997 * 109.46978 * 59.99726 * 17 16 15 19 19 C 1.52997 * 109.47289 * 154.99901 * 13 12 10 20 20 H 1.09002 * 109.47153 * 179.97438 * 19 13 12 21 21 C 1.53000 * 109.47060 * 300.00274 * 19 13 12 22 22 N 1.46497 * 109.46926 * 185.00195 * 21 19 13 23 23 C 1.36942 * 120.00334 * 179.97438 * 22 21 19 24 24 H 1.07998 * 119.99377 * 0.02562 * 23 22 21 25 25 C 1.38812 * 120.00013 * 179.97438 * 23 22 21 26 26 N 1.31624 * 119.99387 * 179.97438 * 25 23 22 27 27 Si 1.86801 * 120.00242 * 0.02562 * 25 23 22 28 28 H 1.48501 * 109.47042 * 89.99834 * 27 25 23 29 29 H 1.48503 * 109.46850 * 209.99638 * 27 25 23 30 30 H 1.48493 * 109.46892 * 329.99649 * 27 25 23 31 31 H 1.08996 * 109.47343 * 270.14614 * 1 2 3 32 32 H 1.08996 * 109.47533 * 30.15129 * 1 2 3 33 33 H 1.09008 * 109.47120 * 150.14764 * 1 2 3 34 34 H 1.09005 * 115.54575 * 154.42003 * 6 5 4 35 35 H 1.09003 * 117.50190 * 359.97438 * 7 6 5 36 36 H 1.09001 * 117.50166 * 145.01744 * 7 6 5 37 37 H 1.08998 * 117.49422 * 214.98072 * 8 6 5 38 38 H 1.08993 * 117.49345 * 359.97438 * 8 6 5 39 39 H 0.96999 * 119.99917 * 359.97438 * 12 10 9 40 40 H 1.09002 * 109.47103 * 179.97438 * 15 13 12 41 41 H 1.08996 * 109.47747 * 59.99485 * 15 13 12 42 42 H 1.08996 * 109.47407 * 180.02562 * 16 15 13 43 43 H 1.09002 * 109.47596 * 60.00070 * 16 15 13 44 44 H 1.09002 * 109.47097 * 299.99925 * 17 16 15 45 45 H 1.08998 * 109.47844 * 180.02562 * 17 16 15 46 46 H 1.09000 * 109.47140 * 180.02562 * 18 17 16 47 47 H 1.09002 * 109.47497 * 60.00450 * 18 17 16 48 48 H 1.09002 * 109.47069 * 304.99600 * 21 19 13 49 49 H 1.08991 * 109.47625 * 64.99919 * 21 19 13 50 50 H 0.97005 * 120.00366 * 359.97438 * 22 21 19 51 51 H 0.96997 * 119.99494 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0337 0.0000 4 8 3.4607 0.7209 -0.0054 5 6 3.6494 -0.6006 -0.0042 6 6 4.9712 -1.3244 -0.0102 7 6 6.2361 -0.4869 0.1879 8 6 5.9112 -1.0689 -1.1901 9 6 2.3992 -1.1696 0.0024 10 6 2.0402 -2.5991 0.0057 11 8 1.8971 -3.1877 1.0602 12 7 1.8704 -3.2540 -1.1599 13 6 1.5131 -4.6748 -1.1567 14 1 0.8567 -4.8823 -0.3115 15 6 2.7827 -5.5198 -1.0357 16 6 3.7042 -5.2284 -2.2219 17 6 2.9826 -5.5758 -3.5256 18 6 1.7129 -4.7308 -3.6465 19 6 0.7914 -5.0222 -2.4603 20 1 0.5259 -6.0794 -2.4580 21 6 -0.4783 -4.1772 -2.5811 22 7 -1.2305 -4.5931 -3.7674 23 6 -2.4110 -3.9741 -4.0815 24 1 -2.7872 -3.1790 -3.4549 25 6 -3.1235 -4.3679 -5.2059 26 7 -4.2583 -3.7732 -5.5074 27 14 -2.4724 -5.7427 -6.2901 28 1 -2.9974 -7.0450 -5.8069 29 1 -2.9139 -5.5199 -7.6904 30 1 -0.9886 -5.7559 -6.2351 31 1 -0.3634 0.0026 1.0276 32 1 -0.3634 0.8886 -0.5161 33 1 -0.3634 -0.8914 -0.5116 34 1 4.9598 -2.3276 0.4161 35 1 6.1124 0.5877 0.3222 36 1 7.0572 -0.9391 0.7443 37 1 6.5185 -1.9039 -1.5396 38 1 5.5734 -0.3777 -1.9621 39 1 1.9842 -2.7845 -2.0010 40 1 2.5168 -6.5768 -1.0328 41 1 3.2969 -5.2723 -0.1070 42 1 4.6086 -5.8306 -2.1360 43 1 3.9701 -4.1713 -2.2244 44 1 2.7167 -6.6329 -3.5232 45 1 3.6391 -5.3687 -4.3707 46 1 1.1985 -4.9786 -4.5750 47 1 1.9787 -3.6737 -3.6490 48 1 -1.0941 -4.3176 -1.6928 49 1 -0.2075 -3.1254 -2.6730 50 1 -0.8925 -5.3070 -4.3305 51 1 -4.7560 -4.0481 -6.2933 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483438940.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:18 Heat of formation + Delta-G solvation = 45.462376 kcal Electronic energy + Delta-G solvation = -31982.162598 eV Core-core repulsion = 27885.287215 eV Total energy + Delta-G solvation = -4096.875383 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.04814 -40.38466 -38.30233 -37.76013 -34.89536 -34.70258 -33.71924 -32.06353 -31.90962 -30.16439 -29.81090 -28.86693 -25.73969 -24.88131 -23.85821 -22.90520 -22.82424 -22.21134 -21.24401 -20.69783 -19.76284 -19.10440 -18.31518 -17.89368 -17.59746 -16.82284 -16.19979 -15.90126 -15.36404 -15.02163 -14.68951 -14.53651 -14.17707 -13.94175 -13.87255 -13.52175 -13.49767 -13.44529 -13.07956 -12.93162 -12.83199 -12.40125 -12.32470 -12.18135 -12.04309 -11.87465 -11.71300 -11.64933 -11.45271 -11.14265 -11.04053 -10.87197 -10.84963 -10.55510 -10.32484 -10.21756 -10.08189 -10.02949 -9.99079 -9.60686 -9.41177 -9.06805 -8.91485 -7.26208 -5.79672 -3.15321 1.03746 1.76566 2.31925 2.56085 3.13247 3.32942 3.36028 3.37342 3.42176 3.83410 4.00886 4.27847 4.43516 4.46546 4.55659 4.58272 4.70912 4.74205 4.77463 5.02272 5.04877 5.13453 5.16711 5.17911 5.33758 5.41401 5.42006 5.44374 5.47013 5.51800 5.52139 5.53673 5.59071 5.60335 5.62670 5.66503 5.74329 5.90857 5.96143 5.99884 6.04405 6.10420 6.19352 6.31921 6.40961 6.44835 6.63902 6.70301 7.40111 7.96296 8.05381 8.07669 8.39238 9.18179 9.90376 10.10005 11.38824 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011554 B = 0.003328 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.796235 B = 8410.878970 C = 9691.255991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.062 3.938 3 N -0.355 5.355 4 O 0.095 5.905 5 C 0.046 3.954 6 C -0.092 4.092 7 C -0.162 4.162 8 C -0.156 4.156 9 C -0.242 4.242 10 C 0.602 3.398 11 O -0.528 6.528 12 N -0.702 5.702 13 C 0.155 3.845 14 H 0.092 0.908 15 C -0.128 4.128 16 C -0.116 4.116 17 C -0.121 4.121 18 C -0.113 4.113 19 C -0.106 4.106 20 H 0.087 0.913 21 C 0.164 3.836 22 N -0.754 5.754 23 C -0.244 4.244 24 H 0.089 0.911 25 C 0.004 3.996 26 N -0.934 5.934 27 Si 0.884 3.116 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.277 1.277 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.139 0.861 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.103 0.897 39 H 0.403 0.597 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.073 0.927 47 H 0.058 0.942 48 H 0.027 0.973 49 H 0.025 0.975 50 H 0.361 0.639 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.357 2.531 10.009 25.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.100 4.100 3 N -0.062 5.062 4 O 0.034 5.966 5 C -0.018 4.018 6 C -0.112 4.112 7 C -0.199 4.199 8 C -0.194 4.194 9 C -0.249 4.249 10 C 0.386 3.614 11 O -0.405 6.405 12 N -0.353 5.353 13 C 0.050 3.950 14 H 0.110 0.890 15 C -0.167 4.167 16 C -0.153 4.153 17 C -0.159 4.159 18 C -0.151 4.151 19 C -0.125 4.125 20 H 0.105 0.895 21 C 0.037 3.963 22 N -0.400 5.400 23 C -0.374 4.374 24 H 0.107 0.893 25 C -0.191 4.191 26 N -0.582 5.582 27 Si 0.715 3.285 28 H -0.211 1.211 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.156 0.844 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.121 0.879 39 H 0.240 0.760 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.092 0.908 47 H 0.077 0.923 48 H 0.045 0.955 49 H 0.043 0.957 50 H 0.194 0.806 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 22.846 3.571 10.772 25.509 hybrid contribution 0.145 -1.491 -1.265 1.961 sum 22.991 2.080 9.507 24.966 Atomic orbital electron populations 1.20292 0.84711 1.04849 1.04047 1.24811 0.98743 0.86263 1.00195 1.73633 0.88932 1.23188 1.20483 1.84500 1.21695 1.22251 1.68141 1.23475 0.95376 0.83654 0.99286 1.20498 0.84150 0.99538 1.06968 1.23103 0.96775 1.00380 0.99634 1.23149 1.00668 1.03915 0.91632 1.21860 0.92477 0.95521 1.15057 1.16809 0.76737 0.83656 0.84199 1.90817 1.50442 1.68032 1.31166 1.46083 1.69704 1.11418 1.08144 1.21009 0.95844 0.79081 0.99037 0.88992 1.21908 0.96196 1.00038 0.98554 1.21494 0.97872 1.01346 0.94626 1.21586 0.96886 1.00269 0.97123 1.21566 0.95159 0.99483 0.98896 1.21693 0.95820 1.01793 0.93240 0.89491 1.20622 0.89665 0.95619 0.90428 1.42707 1.25176 1.43685 1.28419 1.19044 0.95793 1.14638 1.07886 0.89306 1.24673 0.96826 0.99304 0.98331 1.69703 1.15690 1.44230 1.28562 0.86556 0.78265 0.83020 0.80692 1.21086 1.21761 1.20358 0.89519 0.89654 0.89230 0.84376 0.87592 0.87390 0.87229 0.87886 0.76035 0.90854 0.91592 0.92333 0.92100 0.91930 0.92169 0.90833 0.92321 0.95480 0.95684 0.80633 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.49 36.01 0.38 -0.56 16 2 C 0.06 0.81 7.59 -79.77 -0.61 0.21 16 3 N -0.36 -4.78 12.01 34.78 0.42 -4.36 16 4 O 0.10 1.14 10.86 18.66 0.20 1.34 16 5 C 0.05 0.50 7.00 -34.63 -0.24 0.25 16 6 C -0.09 -0.72 6.14 -91.78 -0.56 -1.29 16 7 C -0.16 -0.94 10.19 -26.70 -0.27 -1.21 16 8 C -0.16 -0.91 10.24 -26.69 -0.27 -1.19 16 9 C -0.24 -3.06 6.24 -102.89 -0.64 -3.71 16 10 C 0.60 8.06 7.60 -12.53 -0.10 7.96 16 11 O -0.53 -8.69 16.77 5.27 0.09 -8.61 16 12 N -0.70 -8.25 3.61 -54.89 -0.20 -8.45 16 13 C 0.15 1.87 2.23 -67.93 -0.15 1.72 16 14 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 15 C -0.13 -1.30 5.60 -26.73 -0.15 -1.45 16 16 C -0.12 -1.04 5.77 -26.73 -0.15 -1.19 16 17 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 18 C -0.11 -1.42 4.90 -26.73 -0.13 -1.55 16 19 C -0.11 -1.44 2.02 -90.62 -0.18 -1.63 16 20 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 21 C 0.16 2.96 5.42 -4.04 -0.02 2.94 16 22 N -0.75 -17.09 5.13 -59.91 -0.31 -17.40 16 23 C -0.24 -6.76 10.47 -15.06 -0.16 -6.92 16 24 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 25 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 26 N -0.93 -29.10 13.97 55.49 0.78 -28.32 16 27 Si 0.88 21.66 27.74 -169.99 -4.71 16.94 16 28 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 29 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 30 H -0.28 -6.28 6.52 56.52 0.37 -5.91 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.09 1.07 8.14 -51.92 -0.42 0.65 16 34 H 0.14 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.11 0.63 8.02 -51.93 -0.42 0.22 16 36 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.40 4.47 6.65 -40.82 -0.27 4.20 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.54 7.60 -51.93 -0.39 0.14 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 1.10 7.18 -51.93 -0.37 0.72 16 47 H 0.06 0.70 6.51 -51.93 -0.34 0.37 16 48 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.03 0.46 7.61 -51.93 -0.40 0.06 16 50 H 0.36 7.94 4.71 -40.82 -0.19 7.75 16 51 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 410.36 15.07 6.18 6.18 Total: -1.00 -33.27 410.36 -9.36 -42.63 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -8.28 Total: 9.00 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -3.52 Total: -8.96 kcal Atomic # 7 Polarization: -59.22 SS G_CDS: 0.69 Total: -58.54 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: 0.29 Total: -7.26 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.94 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.27 -9.36 -42.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483438940.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.094 kcal (2) G-P(sol) polarization free energy of solvation -33.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds