Wall clock time and date at job start Wed Apr 1 2020 04:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30010 * 127.33231 * 2 1 4 4 O 1.20659 * 112.30263 * 180.27536 * 3 2 1 5 5 C 1.33491 * 113.15508 * 359.73256 * 4 3 2 6 6 C 1.50699 * 126.82924 * 179.97438 * 5 4 3 7 7 C 1.52991 * 117.50053 * 8.74961 * 6 5 4 8 8 C 1.53002 * 117.50120 * 300.08789 * 6 5 4 9 9 C 1.37360 * 106.34256 * 0.02562 * 5 4 3 10 10 C 1.47396 * 128.56604 * 179.97438 * 9 5 4 11 11 O 1.21610 * 120.00137 * 90.00287 * 10 9 5 12 12 N 1.34774 * 120.00073 * 269.99785 * 10 9 5 13 13 C 1.46506 * 120.00251 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.46566 * 34.99635 * 13 12 10 15 15 C 1.52992 * 109.46999 * 275.00369 * 13 12 10 16 16 C 1.53002 * 109.47106 * 299.99813 * 15 13 12 17 17 C 1.53002 * 109.47128 * 300.00123 * 16 15 13 18 18 C 1.52997 * 109.46978 * 59.99726 * 17 16 15 19 19 C 1.52997 * 109.47289 * 154.99901 * 13 12 10 20 20 H 1.09002 * 109.47153 * 179.97438 * 19 13 12 21 21 C 1.53000 * 109.47060 * 300.00274 * 19 13 12 22 22 N 1.46497 * 109.46926 * 185.00195 * 21 19 13 23 23 C 1.36942 * 120.00334 * 179.97438 * 22 21 19 24 24 H 1.07998 * 119.99377 * 0.02562 * 23 22 21 25 25 C 1.38812 * 120.00013 * 179.97438 * 23 22 21 26 26 N 1.31624 * 119.99387 * 179.97438 * 25 23 22 27 27 Si 1.86801 * 120.00242 * 0.02562 * 25 23 22 28 28 H 1.48501 * 109.47042 * 89.99834 * 27 25 23 29 29 H 1.48503 * 109.46850 * 209.99638 * 27 25 23 30 30 H 1.48493 * 109.46892 * 329.99649 * 27 25 23 31 31 H 1.08996 * 109.47343 * 270.14614 * 1 2 3 32 32 H 1.08996 * 109.47533 * 30.15129 * 1 2 3 33 33 H 1.09008 * 109.47120 * 150.14764 * 1 2 3 34 34 H 1.09005 * 115.54575 * 154.42003 * 6 5 4 35 35 H 1.09003 * 117.50190 * 359.97438 * 7 6 5 36 36 H 1.09001 * 117.50166 * 145.01744 * 7 6 5 37 37 H 1.08998 * 117.49422 * 214.98072 * 8 6 5 38 38 H 1.08993 * 117.49345 * 359.97438 * 8 6 5 39 39 H 0.96999 * 119.99917 * 359.97438 * 12 10 9 40 40 H 1.09002 * 109.47103 * 179.97438 * 15 13 12 41 41 H 1.08996 * 109.47747 * 59.99485 * 15 13 12 42 42 H 1.08996 * 109.47407 * 180.02562 * 16 15 13 43 43 H 1.09002 * 109.47596 * 60.00070 * 16 15 13 44 44 H 1.09002 * 109.47097 * 299.99925 * 17 16 15 45 45 H 1.08998 * 109.47844 * 180.02562 * 17 16 15 46 46 H 1.09000 * 109.47140 * 180.02562 * 18 17 16 47 47 H 1.09002 * 109.47497 * 60.00450 * 18 17 16 48 48 H 1.09002 * 109.47069 * 304.99600 * 21 19 13 49 49 H 1.08991 * 109.47625 * 64.99919 * 21 19 13 50 50 H 0.97005 * 120.00366 * 359.97438 * 22 21 19 51 51 H 0.96997 * 119.99494 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0337 0.0000 4 8 3.4607 0.7209 -0.0054 5 6 3.6494 -0.6006 -0.0042 6 6 4.9712 -1.3244 -0.0102 7 6 6.2361 -0.4869 0.1879 8 6 5.9112 -1.0689 -1.1901 9 6 2.3992 -1.1696 0.0024 10 6 2.0402 -2.5991 0.0057 11 8 1.8971 -3.1877 1.0602 12 7 1.8704 -3.2540 -1.1599 13 6 1.5131 -4.6748 -1.1567 14 1 0.8567 -4.8823 -0.3115 15 6 2.7827 -5.5198 -1.0357 16 6 3.7042 -5.2284 -2.2219 17 6 2.9826 -5.5758 -3.5256 18 6 1.7129 -4.7308 -3.6465 19 6 0.7914 -5.0222 -2.4603 20 1 0.5259 -6.0794 -2.4580 21 6 -0.4783 -4.1772 -2.5811 22 7 -1.2305 -4.5931 -3.7674 23 6 -2.4110 -3.9741 -4.0815 24 1 -2.7872 -3.1790 -3.4549 25 6 -3.1235 -4.3679 -5.2059 26 7 -4.2583 -3.7732 -5.5074 27 14 -2.4724 -5.7427 -6.2901 28 1 -2.9974 -7.0450 -5.8069 29 1 -2.9139 -5.5199 -7.6904 30 1 -0.9886 -5.7559 -6.2351 31 1 -0.3634 0.0026 1.0276 32 1 -0.3634 0.8886 -0.5161 33 1 -0.3634 -0.8914 -0.5116 34 1 4.9598 -2.3276 0.4161 35 1 6.1124 0.5877 0.3222 36 1 7.0572 -0.9391 0.7443 37 1 6.5185 -1.9039 -1.5396 38 1 5.5734 -0.3777 -1.9621 39 1 1.9842 -2.7845 -2.0010 40 1 2.5168 -6.5768 -1.0328 41 1 3.2969 -5.2723 -0.1070 42 1 4.6086 -5.8306 -2.1360 43 1 3.9701 -4.1713 -2.2244 44 1 2.7167 -6.6329 -3.5232 45 1 3.6391 -5.3687 -4.3707 46 1 1.1985 -4.9786 -4.5750 47 1 1.9787 -3.6737 -3.6490 48 1 -1.0941 -4.3176 -1.6928 49 1 -0.2075 -3.1254 -2.6730 50 1 -0.8925 -5.3070 -4.3305 51 1 -4.7560 -4.0481 -6.2933 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483438940.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:17 Heat of formation + Delta-G solvation = 25.873655 kcal Electronic energy + Delta-G solvation = -31983.012029 eV Core-core repulsion = 27885.287215 eV Total energy + Delta-G solvation = -4097.724814 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -46.01755 -41.43787 -39.38178 -38.33345 -36.61535 -35.69307 -34.70600 -33.86160 -32.86129 -31.62159 -30.85118 -29.83589 -27.21590 -25.91220 -24.60811 -24.39294 -23.35072 -23.27265 -22.29246 -21.97761 -20.64852 -20.09405 -19.76392 -19.10352 -18.85445 -17.66571 -17.00221 -16.97841 -16.55937 -16.42037 -15.80021 -15.66610 -15.53570 -15.05448 -14.94478 -14.74714 -14.61074 -14.38905 -14.35195 -14.14534 -13.97165 -13.81749 -13.19351 -13.07264 -13.04449 -12.96087 -12.74227 -12.55787 -12.53409 -12.41500 -12.19113 -12.15299 -11.89739 -11.84988 -11.45661 -11.42472 -11.30782 -11.21836 -11.04474 -11.01211 -10.88801 -10.24985 -10.09585 -9.29767 -8.03028 -5.36781 0.16193 0.76052 1.26598 1.36959 1.41743 1.48959 1.68094 2.18440 2.48367 2.81733 2.99701 3.12202 3.28433 3.41898 3.59464 3.69475 3.75972 3.82296 3.87528 3.95852 3.98156 4.13888 4.23843 4.31323 4.41282 4.44592 4.46789 4.47826 4.52229 4.57506 4.61475 4.67511 4.72874 4.78071 4.90761 4.93457 4.99508 5.01907 5.07233 5.08809 5.17010 5.22357 5.27701 5.30079 5.33708 5.41898 5.49346 5.59508 5.74794 6.20560 6.37929 7.03854 7.07830 7.11069 7.82991 8.03579 9.18702 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011554 B = 0.003328 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.796235 B = 8410.878970 C = 9691.255991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.050 3.950 3 N -0.374 5.374 4 O 0.095 5.905 5 C 0.065 3.935 6 C -0.115 4.115 7 C -0.151 4.151 8 C -0.142 4.142 9 C -0.269 4.269 10 C 0.610 3.390 11 O -0.563 6.563 12 N -0.691 5.691 13 C 0.159 3.841 14 H 0.073 0.927 15 C -0.122 4.122 16 C -0.109 4.109 17 C -0.114 4.114 18 C -0.112 4.112 19 C -0.093 4.093 20 H 0.092 0.908 21 C 0.162 3.838 22 N -0.752 5.752 23 C -0.235 4.235 24 H 0.052 0.948 25 C -0.065 4.065 26 N -0.985 5.985 27 Si 0.956 3.044 28 H -0.279 1.279 29 H -0.297 1.297 30 H -0.245 1.245 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.142 0.858 35 H 0.102 0.898 36 H 0.129 0.871 37 H 0.131 0.869 38 H 0.099 0.901 39 H 0.408 0.592 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.053 0.947 47 H 0.062 0.938 48 H 0.012 0.988 49 H 0.024 0.976 50 H 0.368 0.632 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.200 0.942 9.407 28.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 N -0.082 5.082 4 O 0.035 5.965 5 C 0.001 3.999 6 C -0.134 4.134 7 C -0.188 4.188 8 C -0.179 4.179 9 C -0.276 4.276 10 C 0.395 3.605 11 O -0.442 6.442 12 N -0.342 5.342 13 C 0.054 3.946 14 H 0.091 0.909 15 C -0.160 4.160 16 C -0.147 4.147 17 C -0.152 4.152 18 C -0.150 4.150 19 C -0.112 4.112 20 H 0.110 0.890 21 C 0.036 3.964 22 N -0.399 5.399 23 C -0.366 4.366 24 H 0.070 0.930 25 C -0.256 4.256 26 N -0.636 5.636 27 Si 0.783 3.217 28 H -0.205 1.205 29 H -0.224 1.224 30 H -0.169 1.169 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.159 0.841 35 H 0.121 0.879 36 H 0.147 0.853 37 H 0.149 0.851 38 H 0.117 0.883 39 H 0.245 0.755 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.072 0.928 47 H 0.080 0.920 48 H 0.030 0.970 49 H 0.042 0.958 50 H 0.202 0.798 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 26.745 1.982 10.180 28.685 hybrid contribution -1.063 -0.895 -0.986 1.704 sum 25.682 1.087 9.194 27.300 Atomic orbital electron populations 1.20309 0.84296 1.04692 1.04542 1.25052 0.99314 0.86583 1.00235 1.73612 0.89452 1.23608 1.21490 1.84470 1.21140 1.22860 1.68000 1.24033 0.96242 0.83028 0.96602 1.20675 0.83343 0.99750 1.09614 1.23237 0.95699 1.00064 0.99812 1.23267 0.99146 1.04308 0.91152 1.21824 0.93287 0.95023 1.17457 1.16817 0.76030 0.83789 0.83881 1.90794 1.52203 1.68850 1.32344 1.46014 1.68847 1.11388 1.07991 1.20948 0.96775 0.79557 0.97283 0.90913 1.21856 0.94971 0.99978 0.99188 1.21465 0.98040 1.02037 0.93134 1.21543 0.95559 0.99854 0.98220 1.21548 0.96035 1.00445 0.96941 1.21554 0.93874 1.00979 0.94809 0.88972 1.20747 0.91155 0.96493 0.87985 1.42652 1.23994 1.43465 1.29753 1.19007 0.97215 1.13421 1.06947 0.93037 1.25543 0.97207 1.02578 1.00276 1.69900 1.17639 1.46623 1.29439 0.85397 0.79476 0.79164 0.77688 1.20520 1.22388 1.16881 0.88725 0.88932 0.90183 0.84072 0.87931 0.85307 0.85055 0.88266 0.75452 0.89843 0.91915 0.90265 0.91730 0.91467 0.90789 0.92829 0.91955 0.97025 0.95849 0.79819 0.93360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.95 10.49 71.24 0.75 -1.20 16 2 C 0.05 1.34 7.59 45.16 0.34 1.68 16 3 N -0.37 -10.12 12.01 -44.78 -0.54 -10.66 16 4 O 0.10 2.25 10.86 77.00 0.84 3.09 16 5 C 0.06 1.36 7.00 25.48 0.18 1.54 16 6 C -0.11 -1.56 6.14 -11.54 -0.07 -1.63 16 7 C -0.15 -1.33 10.19 30.61 0.31 -1.02 16 8 C -0.14 -1.21 10.24 30.62 0.31 -0.90 16 9 C -0.27 -6.81 6.24 -18.75 -0.12 -6.92 16 10 C 0.61 16.32 7.60 86.65 0.66 16.97 16 11 O -0.56 -18.73 16.77 -4.06 -0.07 -18.80 16 12 N -0.69 -15.80 3.61 -445.84 -1.61 -17.42 16 13 C 0.16 3.67 2.23 44.99 0.10 3.77 16 14 H 0.07 2.00 7.58 -2.39 -0.02 1.98 16 15 C -0.12 -2.15 5.60 30.59 0.17 -1.97 16 16 C -0.11 -1.53 5.77 30.60 0.18 -1.35 16 17 C -0.11 -1.85 5.92 30.59 0.18 -1.67 16 18 C -0.11 -2.53 4.90 30.59 0.15 -2.38 16 19 C -0.09 -2.40 2.02 -10.79 -0.02 -2.42 16 20 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 21 C 0.16 5.89 5.42 86.38 0.47 6.36 16 22 N -0.75 -33.91 5.13 -343.46 -1.76 -35.67 16 23 C -0.23 -13.33 10.47 84.03 0.88 -12.45 16 24 H 0.05 3.24 8.06 -2.91 -0.02 3.22 16 25 C -0.06 -3.79 5.50 84.86 0.47 -3.33 16 26 N -0.99 -63.24 13.97 21.65 0.30 -62.94 16 27 Si 0.96 44.46 27.74 68.60 1.90 46.37 16 28 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 29 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 30 H -0.24 -9.94 6.52 99.48 0.65 -9.29 16 31 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.14 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.10 1.00 8.02 -2.39 -0.02 0.98 16 36 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.41 8.65 6.65 -92.71 -0.62 8.03 16 40 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.06 0.88 7.60 -2.39 -0.02 0.87 16 44 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 46 H 0.05 1.45 7.18 -2.39 -0.02 1.44 16 47 H 0.06 1.35 6.51 -2.39 -0.02 1.34 16 48 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 49 H 0.02 0.87 7.61 -2.39 -0.02 0.85 16 50 H 0.37 15.53 4.71 -92.70 -0.44 15.10 16 51 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -74.44 410.36 3.83 -70.60 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: -0.16 Total: 32.38 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 4.94 Total: -6.94 kcal Atomic # 7 Polarization: -123.08 SS G_CDS: -3.61 Total: -126.69 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: 0.77 Total: -15.72 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.90 Total: 46.37 kcal Total: -74.44 3.83 -70.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483438940.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.475 kcal (2) G-P(sol) polarization free energy of solvation -74.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds