Wall clock time and date at job start Wed Apr 1 2020 05:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38223 * 120.42027 * 2 1 4 4 N 1.31855 * 120.76288 * 179.97438 * 3 2 1 5 5 C 1.31884 * 121.72537 * 359.97438 * 4 3 2 6 6 C 1.38180 * 120.76855 * 359.97438 * 5 4 3 7 7 C 1.38630 * 120.41799 * 179.97438 * 2 1 3 8 8 C 1.50701 * 120.78621 * 0.03170 * 7 2 1 9 9 C 1.50702 * 109.47485 * 84.99650 * 8 7 2 10 10 O 1.21274 * 119.99675 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99772 * 179.97438 * 9 8 7 12 12 C 1.46927 * 120.63155 * 359.97438 * 11 9 8 13 13 C 1.53191 * 108.77168 * 126.36917 * 12 11 9 14 14 C 1.53039 * 109.31514 * 54.63401 * 13 12 11 15 15 C 1.53036 * 109.54028 * 298.63479 * 14 13 12 16 16 H 1.09000 * 109.50005 * 301.38338 * 15 14 13 17 17 N 1.46494 * 109.50024 * 181.31399 * 15 14 13 18 18 C 1.36938 * 120.00243 * 300.00152 * 17 15 14 19 19 H 1.08002 * 119.99914 * 326.28979 * 18 17 15 20 20 C 1.38814 * 120.00062 * 146.29288 * 18 17 15 21 21 N 1.31613 * 120.00136 * 337.23804 * 20 18 17 22 22 Si 1.86800 * 119.99636 * 157.23727 * 20 18 17 23 23 H 1.48497 * 109.47314 * 60.00013 * 22 20 18 24 24 H 1.48507 * 109.47081 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47223 * 299.99413 * 22 20 18 26 26 C 1.46501 * 119.99867 * 119.99950 * 17 15 14 27 27 C 1.53000 * 109.47261 * 84.41540 * 26 17 15 28 28 O 1.42904 * 109.47236 * 65.00146 * 27 26 17 29 29 C 1.46924 * 120.62858 * 179.71910 * 11 9 8 30 30 H 1.08996 * 109.46987 * 90.00288 * 1 2 3 31 31 H 1.08999 * 109.47260 * 210.00413 * 1 2 3 32 32 H 1.08995 * 109.46716 * 330.00870 * 1 2 3 33 33 H 1.07999 * 119.62076 * 359.97438 * 3 2 1 34 34 H 1.08008 * 119.61565 * 179.97438 * 5 4 3 35 35 H 1.07994 * 120.42345 * 179.74584 * 6 5 4 36 36 H 1.09002 * 109.46808 * 204.99473 * 8 7 2 37 37 H 1.09000 * 109.47146 * 324.99366 * 8 7 2 38 38 H 1.08996 * 109.58561 * 246.15101 * 12 11 9 39 39 H 1.09000 * 109.58729 * 6.44015 * 12 11 9 40 40 H 1.09001 * 109.49570 * 174.58452 * 13 12 11 41 41 H 1.09004 * 109.49848 * 294.68289 * 13 12 11 42 42 H 1.09001 * 109.46111 * 58.65269 * 14 13 12 43 43 H 1.09000 * 109.46178 * 178.60899 * 14 13 12 44 44 H 0.96995 * 120.00342 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.47017 * 204.41477 * 26 17 15 46 46 H 1.08995 * 109.47121 * 324.41185 * 26 17 15 47 47 H 1.08999 * 109.47480 * 185.00066 * 27 26 17 48 48 H 1.09004 * 109.47326 * 305.00200 * 27 26 17 49 49 H 0.96697 * 114.00302 * 180.02562 * 28 27 26 50 50 H 1.09003 * 109.58442 * 353.42295 * 29 11 9 51 51 H 1.09003 * 109.58595 * 113.84087 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5255 1.1998 0.0005 5 6 4.2257 0.0822 0.0015 6 6 3.5948 -1.1472 0.0026 7 6 2.2089 -1.1955 0.0005 8 6 1.4830 -2.5161 0.0004 9 6 1.1331 -2.8970 -1.4151 10 8 1.4431 -2.1680 -2.3334 11 7 0.4766 -4.0482 -1.6605 12 6 0.0958 -4.9424 -0.5585 13 6 -1.4067 -5.2263 -0.6508 14 6 -1.7346 -5.7699 -2.0433 15 6 -1.3753 -4.7222 -3.0994 16 1 -1.9316 -3.8050 -2.9060 17 7 -1.7186 -5.2311 -4.4295 18 6 -1.1375 -6.3809 -4.8938 19 1 -0.1208 -6.6209 -4.6196 20 6 -1.8552 -7.2379 -5.7167 21 7 -3.1710 -7.2173 -5.7008 22 14 -0.9532 -8.4206 -6.8469 23 1 -0.1037 -9.3295 -6.0360 24 1 -1.9403 -9.2209 -7.6154 25 1 -0.0987 -7.6521 -7.7874 26 6 -2.6835 -4.5098 -5.2632 27 6 -1.9662 -3.3921 -6.0228 28 8 -1.0289 -3.9634 -6.9378 29 6 0.1231 -4.4301 -3.0344 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3632 0.8900 0.5137 33 1 1.6676 2.1276 -0.0004 34 1 5.3047 0.1284 0.0015 35 1 4.1737 -2.0589 -0.0006 36 1 2.1241 -3.2831 0.4351 37 1 0.5701 -2.4290 0.5895 38 1 0.6500 -5.8775 -0.6387 39 1 0.3217 -4.4643 0.3947 40 1 -1.6845 -5.9638 0.1023 41 1 -1.9624 -4.3042 -0.4801 42 1 -1.1599 -6.6785 -2.2230 43 1 -2.7991 -5.9960 -2.1035 44 1 -3.6725 -7.8164 -6.2756 45 1 -3.1364 -5.2002 -5.9748 46 1 -3.4597 -4.0792 -4.6306 47 1 -2.6971 -2.8001 -6.5737 48 1 -1.4392 -2.7520 -5.3152 49 1 -0.5363 -3.3113 -7.4546 50 1 0.3647 -3.6131 -3.7144 51 1 0.6796 -5.3227 -3.3203 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489161298.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:01 Heat of formation + Delta-G solvation = -26.556862 kcal Electronic energy + Delta-G solvation = -31925.973570 eV Core-core repulsion = 27825.975198 eV Total energy + Delta-G solvation = -4099.998372 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.73460 -39.66041 -37.54790 -36.17785 -34.65224 -34.47149 -32.60436 -32.19502 -31.32445 -29.97326 -28.82500 -27.39560 -27.06810 -24.92884 -24.15505 -22.96212 -22.25497 -21.86447 -20.79259 -19.76175 -18.70070 -17.17027 -16.96127 -16.72014 -16.53271 -16.28842 -15.48601 -15.21611 -15.02725 -14.68996 -14.38136 -14.30149 -14.01130 -13.78841 -13.55349 -13.47817 -13.14917 -13.03444 -12.86351 -12.80208 -12.71941 -12.48186 -12.40745 -12.08002 -11.92589 -11.50074 -11.30855 -11.02714 -10.95712 -10.80062 -10.64448 -10.41076 -10.25513 -9.94114 -9.92022 -9.83878 -9.57561 -9.54856 -9.40768 -9.06177 -8.99186 -8.49520 -8.25831 -6.58248 -5.73783 -3.24204 1.02780 1.11135 2.74365 3.17444 3.43654 3.49419 3.56850 3.70937 4.29628 4.38369 4.53643 4.55772 4.63900 4.73821 4.82298 4.94781 5.14652 5.14999 5.20980 5.26078 5.28528 5.35138 5.36276 5.44965 5.52066 5.52545 5.63057 5.69703 5.81012 5.83974 5.93691 5.96304 5.99931 6.12855 6.18897 6.21275 6.26958 6.34481 6.48319 6.58792 6.60175 6.65220 6.78476 6.81457 7.02153 7.16191 7.63653 7.69669 7.85603 7.86559 8.33448 8.46436 8.62943 9.21828 9.87531 10.39963 11.29282 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.002847 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.356557 B = 9832.930860 C =10196.772147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.120 4.120 3 C 0.097 3.903 4 N -0.486 5.486 5 C 0.089 3.911 6 C -0.157 4.157 7 C -0.020 4.020 8 C -0.108 4.108 9 C 0.514 3.486 10 O -0.538 6.538 11 N -0.604 5.604 12 C 0.106 3.894 13 C -0.133 4.133 14 C -0.122 4.122 15 C 0.167 3.833 16 H 0.047 0.953 17 N -0.568 5.568 18 C -0.239 4.239 19 H 0.057 0.943 20 C 0.016 3.984 21 N -0.893 5.893 22 Si 0.896 3.104 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.282 1.282 26 C 0.143 3.857 27 C 0.058 3.942 28 O -0.544 6.544 29 C 0.103 3.897 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.132 0.868 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.253 0.747 45 H 0.109 0.891 46 H 0.035 0.965 47 H 0.019 0.981 48 H 0.022 0.978 49 H 0.350 0.650 50 H 0.083 0.917 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.126 10.483 14.965 19.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.122 4.122 3 C -0.061 4.061 4 N -0.194 5.194 5 C -0.067 4.067 6 C -0.176 4.176 7 C -0.029 4.029 8 C -0.147 4.147 9 C 0.301 3.699 10 O -0.415 6.415 11 N -0.338 5.338 12 C -0.017 4.017 13 C -0.172 4.172 14 C -0.161 4.161 15 C 0.059 3.941 16 H 0.066 0.934 17 N -0.287 5.287 18 C -0.368 4.368 19 H 0.075 0.925 20 C -0.183 4.183 21 N -0.537 5.537 22 Si 0.727 3.273 23 H -0.212 1.212 24 H -0.220 1.220 25 H -0.208 1.208 26 C 0.016 3.984 27 C -0.022 4.022 28 O -0.345 6.345 29 C -0.020 4.020 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.170 0.830 34 H 0.171 0.829 35 H 0.150 0.850 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.127 0.873 46 H 0.053 0.947 47 H 0.038 0.962 48 H 0.040 0.960 49 H 0.193 0.807 50 H 0.101 0.899 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.355 10.975 14.620 19.354 hybrid contribution 0.199 -0.993 -0.898 1.354 sum 6.554 9.982 13.722 18.190 Atomic orbital electron populations 1.20780 0.90338 1.02775 1.03167 1.20735 0.97524 0.93579 1.00317 1.22587 0.89921 0.97233 0.96319 1.67624 1.08345 1.31467 1.11957 1.22640 1.00193 0.87616 0.96265 1.21978 0.94355 0.99784 1.01530 1.19585 0.93520 0.93869 0.95878 1.20775 1.02160 0.95302 0.96483 1.20218 0.78298 0.81032 0.90341 1.90717 1.53688 1.50940 1.46145 1.48258 1.56010 1.20506 1.09023 1.21779 0.96651 0.94234 0.89016 1.21969 0.94580 1.01160 0.99526 1.21932 1.02155 1.00171 0.91884 1.20519 0.91961 0.94689 0.86981 0.93440 1.43671 1.49513 1.25198 1.10334 1.18741 0.94307 0.96875 1.26874 0.92497 1.24920 0.94839 0.97160 1.01384 1.69958 1.04912 1.39266 1.39535 0.86481 0.79065 0.80235 0.81559 1.21192 1.21964 1.20788 1.21076 0.90093 0.92842 0.94378 1.23086 0.90819 0.97274 0.91022 1.86831 1.56248 1.35606 1.55832 1.22256 0.98627 1.00974 0.80125 0.90364 0.91366 0.91166 0.82961 0.82910 0.84977 0.87844 0.87491 0.91215 0.90645 0.91304 0.92246 0.91252 0.91797 0.93731 0.87342 0.94693 0.96242 0.95999 0.80691 0.89881 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 9.66 36.01 0.35 -0.71 16 2 C -0.12 -1.36 5.90 -104.48 -0.62 -1.97 16 3 C 0.10 1.11 10.86 -17.55 -0.19 0.92 16 4 N -0.49 -6.14 10.36 -13.25 -0.14 -6.28 16 5 C 0.09 0.99 11.18 -17.55 -0.20 0.80 16 6 C -0.16 -1.71 9.80 -39.44 -0.39 -2.09 16 7 C -0.02 -0.23 4.41 -104.32 -0.46 -0.69 16 8 C -0.11 -1.09 3.75 -29.03 -0.11 -1.20 16 9 C 0.51 7.53 7.69 -10.98 -0.08 7.45 16 10 O -0.54 -10.17 15.45 5.56 0.09 -10.08 16 11 N -0.60 -8.88 2.98 -173.01 -0.52 -9.40 16 12 C 0.11 1.20 6.34 -3.71 -0.02 1.18 16 13 C -0.13 -1.67 6.08 -26.61 -0.16 -1.83 16 14 C -0.12 -2.15 5.11 -26.69 -0.14 -2.28 16 15 C 0.17 3.26 2.77 -68.02 -0.19 3.07 16 16 H 0.05 0.92 7.87 -51.93 -0.41 0.51 16 17 N -0.57 -13.34 2.35 -165.76 -0.39 -13.73 16 18 C -0.24 -6.25 8.06 -15.06 -0.12 -6.37 16 19 H 0.06 1.51 6.73 -52.49 -0.35 1.16 16 20 C 0.02 0.44 4.90 -17.43 -0.09 0.35 16 21 N -0.89 -25.17 11.36 55.49 0.63 -24.54 16 22 Si 0.90 22.03 29.61 -169.99 -5.03 17.00 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 25 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 26 C 0.14 3.30 5.57 -4.04 -0.02 3.28 16 27 C 0.06 1.19 7.39 37.16 0.27 1.46 16 28 O -0.54 -11.81 13.40 -35.23 -0.47 -12.28 16 29 C 0.10 1.93 5.75 -3.91 -0.02 1.90 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.56 6.16 -51.93 -0.32 0.24 16 32 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 35 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 36 H 0.10 0.81 7.87 -51.93 -0.41 0.40 16 37 H 0.11 0.86 5.85 -51.93 -0.30 0.56 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 0.60 5.93 -51.93 -0.31 0.29 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.07 1.35 7.70 -51.93 -0.40 0.95 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.11 2.90 5.35 -51.93 -0.28 2.62 16 46 H 0.03 0.76 8.04 -51.93 -0.42 0.34 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.35 5.74 9.12 45.56 0.42 6.15 16 50 H 0.08 1.75 7.01 -51.93 -0.36 1.39 16 51 H 0.07 1.44 6.77 -51.93 -0.35 1.09 16 LS Contribution 404.03 15.07 6.09 6.09 Total: -1.00 -33.66 404.03 -9.21 -42.86 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -7.28 Total: 7.10 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -2.18 Total: 3.25 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.41 Total: -53.95 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.39 Total: -22.36 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.66 -9.21 -42.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489161298.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.306 kcal (2) G-P(sol) polarization free energy of solvation -33.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds