Wall clock time and date at job start Wed Apr 1 2020 05:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38223 * 120.42027 * 2 1 4 4 N 1.31855 * 120.76288 * 179.97438 * 3 2 1 5 5 C 1.31884 * 121.72537 * 359.97438 * 4 3 2 6 6 C 1.38180 * 120.76855 * 359.97438 * 5 4 3 7 7 C 1.38630 * 120.41799 * 179.97438 * 2 1 3 8 8 C 1.50701 * 120.78621 * 0.03170 * 7 2 1 9 9 C 1.50702 * 109.47485 * 84.99650 * 8 7 2 10 10 O 1.21274 * 119.99675 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99772 * 179.97438 * 9 8 7 12 12 C 1.46927 * 120.63155 * 359.97438 * 11 9 8 13 13 C 1.53191 * 108.77168 * 126.36917 * 12 11 9 14 14 C 1.53039 * 109.31514 * 54.63401 * 13 12 11 15 15 C 1.53036 * 109.54028 * 298.63479 * 14 13 12 16 16 H 1.09000 * 109.50005 * 301.38338 * 15 14 13 17 17 N 1.46494 * 109.50024 * 181.31399 * 15 14 13 18 18 C 1.36938 * 120.00243 * 300.00152 * 17 15 14 19 19 H 1.08002 * 119.99914 * 326.28979 * 18 17 15 20 20 C 1.38814 * 120.00062 * 146.29288 * 18 17 15 21 21 N 1.31613 * 120.00136 * 337.23804 * 20 18 17 22 22 Si 1.86800 * 119.99636 * 157.23727 * 20 18 17 23 23 H 1.48497 * 109.47314 * 60.00013 * 22 20 18 24 24 H 1.48507 * 109.47081 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47223 * 299.99413 * 22 20 18 26 26 C 1.46501 * 119.99867 * 119.99950 * 17 15 14 27 27 C 1.53000 * 109.47261 * 84.41540 * 26 17 15 28 28 O 1.42904 * 109.47236 * 65.00146 * 27 26 17 29 29 C 1.46924 * 120.62858 * 179.71910 * 11 9 8 30 30 H 1.08996 * 109.46987 * 90.00288 * 1 2 3 31 31 H 1.08999 * 109.47260 * 210.00413 * 1 2 3 32 32 H 1.08995 * 109.46716 * 330.00870 * 1 2 3 33 33 H 1.07999 * 119.62076 * 359.97438 * 3 2 1 34 34 H 1.08008 * 119.61565 * 179.97438 * 5 4 3 35 35 H 1.07994 * 120.42345 * 179.74584 * 6 5 4 36 36 H 1.09002 * 109.46808 * 204.99473 * 8 7 2 37 37 H 1.09000 * 109.47146 * 324.99366 * 8 7 2 38 38 H 1.08996 * 109.58561 * 246.15101 * 12 11 9 39 39 H 1.09000 * 109.58729 * 6.44015 * 12 11 9 40 40 H 1.09001 * 109.49570 * 174.58452 * 13 12 11 41 41 H 1.09004 * 109.49848 * 294.68289 * 13 12 11 42 42 H 1.09001 * 109.46111 * 58.65269 * 14 13 12 43 43 H 1.09000 * 109.46178 * 178.60899 * 14 13 12 44 44 H 0.96995 * 120.00342 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.47017 * 204.41477 * 26 17 15 46 46 H 1.08995 * 109.47121 * 324.41185 * 26 17 15 47 47 H 1.08999 * 109.47480 * 185.00066 * 27 26 17 48 48 H 1.09004 * 109.47326 * 305.00200 * 27 26 17 49 49 H 0.96697 * 114.00302 * 180.02562 * 28 27 26 50 50 H 1.09003 * 109.58442 * 353.42295 * 29 11 9 51 51 H 1.09003 * 109.58595 * 113.84087 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5255 1.1998 0.0005 5 6 4.2257 0.0822 0.0015 6 6 3.5948 -1.1472 0.0026 7 6 2.2089 -1.1955 0.0005 8 6 1.4830 -2.5161 0.0004 9 6 1.1331 -2.8970 -1.4151 10 8 1.4431 -2.1680 -2.3334 11 7 0.4766 -4.0482 -1.6605 12 6 0.0958 -4.9424 -0.5585 13 6 -1.4067 -5.2263 -0.6508 14 6 -1.7346 -5.7699 -2.0433 15 6 -1.3753 -4.7222 -3.0994 16 1 -1.9316 -3.8050 -2.9060 17 7 -1.7186 -5.2311 -4.4295 18 6 -1.1375 -6.3809 -4.8938 19 1 -0.1208 -6.6209 -4.6196 20 6 -1.8552 -7.2379 -5.7167 21 7 -3.1710 -7.2173 -5.7008 22 14 -0.9532 -8.4206 -6.8469 23 1 -0.1037 -9.3295 -6.0360 24 1 -1.9403 -9.2209 -7.6154 25 1 -0.0987 -7.6521 -7.7874 26 6 -2.6835 -4.5098 -5.2632 27 6 -1.9662 -3.3921 -6.0228 28 8 -1.0289 -3.9634 -6.9378 29 6 0.1231 -4.4301 -3.0344 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3632 0.8900 0.5137 33 1 1.6676 2.1276 -0.0004 34 1 5.3047 0.1284 0.0015 35 1 4.1737 -2.0589 -0.0006 36 1 2.1241 -3.2831 0.4351 37 1 0.5701 -2.4290 0.5895 38 1 0.6500 -5.8775 -0.6387 39 1 0.3217 -4.4643 0.3947 40 1 -1.6845 -5.9638 0.1023 41 1 -1.9624 -4.3042 -0.4801 42 1 -1.1599 -6.6785 -2.2230 43 1 -2.7991 -5.9960 -2.1035 44 1 -3.6725 -7.8164 -6.2756 45 1 -3.1364 -5.2002 -5.9748 46 1 -3.4597 -4.0792 -4.6306 47 1 -2.6971 -2.8001 -6.5737 48 1 -1.4392 -2.7520 -5.3152 49 1 -0.5363 -3.3113 -7.4546 50 1 0.3647 -3.6131 -3.7144 51 1 0.6796 -5.3227 -3.3203 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489161298.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:00 Heat of formation + Delta-G solvation = -49.621312 kcal Electronic energy + Delta-G solvation = -31926.973719 eV Core-core repulsion = 27825.975198 eV Total energy + Delta-G solvation = -4100.998522 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.67557 -40.74343 -39.01296 -37.73288 -36.28517 -35.35919 -33.84686 -33.30191 -32.89760 -31.43133 -29.93907 -28.91841 -28.00775 -26.14272 -25.95552 -23.91503 -23.52283 -22.80639 -22.26998 -21.36124 -19.87025 -18.43792 -18.28079 -18.09900 -17.73655 -17.46522 -16.91185 -16.37953 -16.19555 -16.06498 -15.95936 -15.47560 -15.32352 -15.21700 -14.80550 -14.50152 -14.35164 -14.26592 -14.04307 -13.98534 -13.73108 -13.65861 -13.50878 -13.37566 -13.09854 -12.84194 -12.73982 -12.69106 -12.48158 -12.33977 -12.24323 -11.95071 -11.72457 -11.60283 -11.58818 -11.25153 -11.00041 -10.73767 -10.43303 -10.39410 -10.34413 -9.79317 -9.63803 -8.51530 -7.77154 -5.29153 0.22779 0.27413 1.44162 1.49766 1.56321 1.64453 2.04048 2.56946 2.86853 3.34437 3.49121 3.54558 3.61932 3.70221 3.75726 3.82040 4.01295 4.07016 4.10849 4.16526 4.17838 4.33338 4.43658 4.46004 4.47252 4.49860 4.58914 4.63821 4.66563 4.73336 4.78827 4.81476 4.87788 4.89504 4.94580 4.98846 5.02326 5.08001 5.12216 5.22250 5.26069 5.42799 5.48454 5.55300 5.66023 5.72573 5.81444 5.83219 6.50339 6.52220 7.05114 7.11060 7.20389 7.23763 7.93321 8.41873 9.21867 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.002847 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.356557 B = 9832.930860 C =10196.772147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.130 4.130 3 C 0.081 3.919 4 N -0.511 5.511 5 C 0.075 3.925 6 C -0.163 4.163 7 C -0.037 4.037 8 C -0.096 4.096 9 C 0.513 3.487 10 O -0.587 6.587 11 N -0.604 5.604 12 C 0.103 3.897 13 C -0.123 4.123 14 C -0.114 4.114 15 C 0.167 3.833 16 H 0.050 0.950 17 N -0.582 5.582 18 C -0.228 4.228 19 H 0.048 0.952 20 C -0.031 4.031 21 N -0.918 5.918 22 Si 0.943 3.057 23 H -0.276 1.276 24 H -0.296 1.296 25 H -0.291 1.291 26 C 0.138 3.862 27 C 0.068 3.932 28 O -0.573 6.573 29 C 0.122 3.878 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.169 0.831 34 H 0.174 0.826 35 H 0.153 0.847 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.074 0.926 39 H 0.125 0.875 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.045 0.955 43 H 0.039 0.961 44 H 0.247 0.753 45 H 0.075 0.925 46 H 0.044 0.956 47 H 0.047 0.953 48 H 0.025 0.975 49 H 0.373 0.627 50 H 0.053 0.947 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.843 10.924 17.808 21.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.132 4.132 3 C -0.076 4.076 4 N -0.220 5.220 5 C -0.081 4.081 6 C -0.182 4.182 7 C -0.045 4.045 8 C -0.135 4.135 9 C 0.302 3.698 10 O -0.467 6.467 11 N -0.337 5.337 12 C -0.018 4.018 13 C -0.162 4.162 14 C -0.153 4.153 15 C 0.060 3.940 16 H 0.068 0.932 17 N -0.302 5.302 18 C -0.359 4.359 19 H 0.066 0.934 20 C -0.227 4.227 21 N -0.564 5.564 22 Si 0.773 3.227 23 H -0.202 1.202 24 H -0.222 1.222 25 H -0.219 1.219 26 C 0.012 3.988 27 C -0.012 4.012 28 O -0.378 6.378 29 C -0.003 4.003 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.186 0.814 34 H 0.191 0.809 35 H 0.171 0.829 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.093 0.907 39 H 0.143 0.857 40 H 0.116 0.884 41 H 0.089 0.911 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.092 0.908 46 H 0.062 0.938 47 H 0.065 0.935 48 H 0.044 0.956 49 H 0.219 0.781 50 H 0.071 0.929 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.089 11.422 17.507 22.073 hybrid contribution 0.025 -1.037 -1.787 2.066 sum 7.114 10.385 15.721 20.140 Atomic orbital electron populations 1.20799 0.89075 1.04616 1.02303 1.21013 0.98588 0.93613 0.99944 1.22955 0.89916 0.98327 0.96398 1.67634 1.09087 1.32457 1.12819 1.23075 1.01359 0.87593 0.96033 1.22283 0.94597 1.00497 1.00834 1.19870 0.94010 0.94546 0.96113 1.20818 1.04035 0.95440 0.93237 1.21026 0.76932 0.79947 0.91856 1.90703 1.55463 1.52375 1.48207 1.48288 1.56036 1.21337 1.08032 1.22089 0.95590 0.94453 0.89695 1.21912 0.95745 1.02187 0.96322 1.21773 1.00067 0.98667 0.94831 1.20637 0.92487 0.95155 0.85748 0.93207 1.43829 1.49431 1.24734 1.12216 1.18811 0.93831 0.97140 1.26104 0.93408 1.25428 0.95370 0.98926 1.02968 1.70066 1.05729 1.40240 1.40366 0.85725 0.78003 0.78909 0.80052 1.20188 1.22204 1.21851 1.21011 0.90684 0.92920 0.94228 1.22895 0.91048 0.96165 0.91072 1.86751 1.56958 1.37643 1.56454 1.21669 0.97371 0.98696 0.82519 0.92392 0.89825 0.89167 0.81359 0.80852 0.82937 0.84529 0.84505 0.90738 0.85673 0.88433 0.91058 0.93606 0.94254 0.94383 0.90765 0.93777 0.93523 0.95635 0.78058 0.92880 0.93381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.80 9.66 71.24 0.69 -1.11 16 2 C -0.13 -2.69 5.90 -19.77 -0.12 -2.81 16 3 C 0.08 1.76 10.86 84.69 0.92 2.68 16 4 N -0.51 -12.47 10.36 -195.84 -2.03 -14.50 16 5 C 0.08 1.57 11.18 84.67 0.95 2.52 16 6 C -0.16 -3.17 9.80 22.36 0.22 -2.95 16 7 C -0.04 -0.75 4.41 -19.67 -0.09 -0.84 16 8 C -0.10 -1.55 3.75 29.10 0.11 -1.44 16 9 C 0.51 13.82 7.69 87.66 0.67 14.49 16 10 O -0.59 -21.90 15.45 -3.01 -0.05 -21.95 16 11 N -0.60 -16.45 2.98 -819.67 -2.44 -18.89 16 12 C 0.10 1.90 6.34 86.36 0.55 2.45 16 13 C -0.12 -2.64 6.08 30.67 0.19 -2.46 16 14 C -0.11 -3.94 5.11 30.62 0.16 -3.79 16 15 C 0.17 6.55 2.77 44.94 0.12 6.68 16 16 H 0.05 1.92 7.87 -2.39 -0.02 1.90 16 17 N -0.58 -27.98 2.35 -678.35 -1.59 -29.57 16 18 C -0.23 -12.28 8.06 84.03 0.68 -11.60 16 19 H 0.05 2.62 6.73 -2.91 -0.02 2.60 16 20 C -0.03 -1.71 4.90 84.86 0.42 -1.30 16 21 N -0.92 -53.31 11.36 21.65 0.25 -53.06 16 22 Si 0.94 46.24 29.61 68.60 2.03 48.27 16 23 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 25 H -0.29 -14.61 7.11 99.48 0.71 -13.91 16 26 C 0.14 6.51 5.57 86.38 0.48 6.99 16 27 C 0.07 2.76 7.39 71.98 0.53 3.30 16 28 O -0.57 -25.03 13.40 -148.98 -2.00 -27.03 16 29 C 0.12 4.58 5.75 86.23 0.50 5.08 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.08 1.06 6.16 -2.39 -0.01 1.04 16 32 H 0.09 1.06 8.09 -2.39 -0.02 1.04 16 33 H 0.17 2.84 8.06 -2.91 -0.02 2.81 16 34 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 36 H 0.14 1.34 7.87 -2.39 -0.02 1.32 16 37 H 0.14 1.41 5.85 -2.39 -0.01 1.39 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.13 1.16 5.93 -2.39 -0.01 1.14 16 40 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.05 1.78 7.70 -2.39 -0.02 1.76 16 43 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 45 H 0.07 4.10 5.35 -2.39 -0.01 4.09 16 46 H 0.04 1.94 8.04 -2.39 -0.02 1.92 16 47 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 49 H 0.37 12.11 9.12 -74.06 -0.68 11.43 16 50 H 0.05 2.30 7.01 -2.39 -0.02 2.28 16 51 H 0.05 2.00 6.77 -2.39 -0.02 1.98 16 Total: -1.00 -77.70 404.03 1.41 -76.30 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: 0.27 Total: 24.53 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 6.97 Total: 15.90 kcal Atomic # 7 Polarization: -110.20 SS G_CDS: -5.82 Total: -116.02 kcal Atomic # 8 Polarization: -46.93 SS G_CDS: -2.04 Total: -48.98 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -77.70 1.41 -76.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489161298.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.675 kcal (2) G-P(sol) polarization free energy of solvation -77.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds