Wall clock time and date at job start Wed Apr 1 2020 04:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30014 * 127.33788 * 2 1 4 4 O 1.20659 * 112.30298 * 179.97438 * 3 2 1 5 5 C 1.33494 * 113.15422 * 359.75986 * 4 3 2 6 6 C 1.50704 * 126.82917 * 180.30389 * 5 4 3 7 7 C 1.52995 * 117.49775 * 8.72217 * 6 5 4 8 8 C 1.52993 * 60.00126 * 252.51568 * 7 6 5 9 9 C 1.37358 * 106.34124 * 0.38586 * 5 4 3 10 10 C 1.47404 * 128.56367 * 179.90899 * 9 5 4 11 11 O 1.21612 * 120.00186 * 269.70629 * 10 9 5 12 12 N 1.34774 * 119.99803 * 89.70076 * 10 9 5 13 13 C 1.46501 * 120.00166 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47527 * 180.02562 * 13 12 10 15 15 C 1.52995 * 109.47282 * 180.02562 * 14 13 12 16 16 C 1.53044 * 109.46130 * 295.02684 * 15 14 13 17 17 C 1.53192 * 109.31215 * 178.59974 * 16 15 14 18 18 N 1.46925 * 108.76298 * 54.65781 * 17 16 15 19 19 C 1.36940 * 120.63156 * 126.40746 * 18 17 16 20 20 H 1.08000 * 119.99539 * 331.82164 * 19 18 17 21 21 C 1.38805 * 120.00528 * 151.82477 * 19 18 17 22 22 N 1.31628 * 119.99712 * 343.07346 * 21 19 18 23 23 Si 1.86801 * 120.00272 * 163.07405 * 21 19 18 24 24 H 1.48497 * 109.47220 * 90.00016 * 23 21 19 25 25 H 1.48505 * 109.46943 * 209.99843 * 23 21 19 26 26 H 1.48498 * 109.46898 * 329.99503 * 23 21 19 27 27 C 1.46924 * 118.73975 * 306.38000 * 18 17 16 28 28 C 1.53044 * 109.45815 * 174.97491 * 15 14 13 29 29 H 1.09004 * 109.47168 * 269.99733 * 1 2 3 30 30 H 1.08998 * 109.46985 * 29.99667 * 1 2 3 31 31 H 1.08999 * 109.47238 * 149.99510 * 1 2 3 32 32 H 1.08997 * 115.55375 * 154.43267 * 6 5 4 33 33 H 1.09006 * 117.50140 * 0.02562 * 7 6 5 34 34 H 1.09002 * 117.50234 * 145.02319 * 7 6 5 35 35 H 1.09003 * 117.50160 * 252.51142 * 8 7 6 36 36 H 1.09001 * 117.51859 * 107.48797 * 8 7 6 37 37 H 0.97001 * 120.00004 * 0.02562 * 12 10 9 38 38 H 1.08997 * 109.47124 * 300.00400 * 13 12 10 39 39 H 1.08999 * 109.47210 * 60.00104 * 13 12 10 40 40 H 1.08997 * 109.47044 * 300.00202 * 14 13 12 41 41 H 1.09008 * 109.46863 * 59.99867 * 14 13 12 42 42 H 1.08996 * 109.45947 * 55.00066 * 15 14 13 43 43 H 1.08995 * 109.49751 * 298.56988 * 16 15 14 44 44 H 1.09000 * 109.49504 * 58.66203 * 16 15 14 45 45 H 1.08997 * 109.59941 * 294.86909 * 17 16 15 46 46 H 1.09002 * 109.70277 * 174.50807 * 17 16 15 47 47 H 0.96996 * 119.99881 * 180.02562 * 22 21 19 48 48 H 1.08994 * 109.58780 * 293.82443 * 27 18 17 49 49 H 1.09003 * 109.70394 * 173.46777 * 27 18 17 50 50 H 1.08997 * 109.49635 * 301.33488 * 28 15 14 51 51 H 1.08992 * 109.50075 * 61.40497 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7207 0.0005 5 6 3.6494 -0.6008 0.0061 6 6 4.9711 -1.3248 0.0146 7 6 6.2341 -0.4868 0.2231 8 6 5.9229 -1.0712 -1.1561 9 6 2.3991 -1.1696 0.0006 10 6 2.0400 -2.5992 0.0014 11 8 1.8921 -3.1897 -1.0514 12 7 1.8755 -3.2520 1.1690 13 6 1.5180 -4.6727 1.1699 14 6 1.3929 -5.1663 2.6127 15 6 1.0202 -6.6501 2.6136 16 6 -0.3718 -6.8266 2.0025 17 6 -0.7270 -8.3165 1.9731 18 7 -0.5907 -8.8617 3.3306 19 6 -1.6264 -9.5381 3.9181 20 1 -2.6454 -9.3111 3.6415 21 6 -1.3666 -10.5152 4.8691 22 7 -0.1592 -11.0292 4.9717 23 14 -2.7305 -11.1008 6.0033 24 1 -3.4357 -12.2483 5.3781 25 1 -2.1468 -11.5259 7.3010 26 1 -3.6931 -9.9935 6.2326 27 6 0.6782 -8.6681 4.0456 28 6 1.0178 -7.1743 4.0515 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8899 -0.5139 32 1 4.9555 -2.3271 0.4425 33 1 6.1091 0.5880 0.3546 34 1 7.0497 -0.9378 0.7885 35 1 6.5337 -1.9067 -1.4983 36 1 5.5930 -0.3811 -1.9327 37 1 1.9932 -2.7809 2.0088 38 1 0.5663 -4.8082 0.6562 39 1 2.2924 -5.2426 0.6565 40 1 2.3444 -5.0307 3.1269 41 1 0.6183 -4.5963 3.1258 42 1 1.7486 -7.2078 2.0250 43 1 -1.1043 -6.2895 2.6050 44 1 -0.3758 -6.4317 0.9866 45 1 -0.0495 -8.8406 1.2990 46 1 -1.7539 -8.4427 1.6300 47 1 0.0223 -11.7122 5.6360 48 1 1.4702 -9.2209 3.5405 49 1 0.5803 -9.0247 5.0710 50 1 2.0029 -7.0270 4.4941 51 1 0.2724 -6.6336 4.6346 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495520637.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:06 Heat of formation + Delta-G solvation = 34.491656 kcal Electronic energy + Delta-G solvation = -30131.414497 eV Core-core repulsion = 26034.063388 eV Total energy + Delta-G solvation = -4097.351110 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -46.00818 -40.78629 -39.48942 -38.37443 -36.74370 -35.68949 -35.07353 -33.19029 -32.70873 -31.56528 -30.13604 -29.74962 -27.20581 -25.76844 -24.65940 -24.33672 -23.53263 -23.31282 -22.17996 -21.80681 -20.70404 -20.48513 -19.08795 -18.80242 -18.68275 -17.61321 -17.17905 -16.95723 -16.81445 -16.31629 -15.73934 -15.42799 -15.29076 -15.26775 -14.90554 -14.71756 -14.39417 -14.33697 -14.31254 -14.05695 -13.86251 -13.84394 -13.09803 -13.01549 -12.93685 -12.83425 -12.57100 -12.53332 -12.45361 -12.28649 -12.19718 -12.13808 -11.93222 -11.79249 -11.60079 -11.45870 -11.36795 -11.01461 -10.98574 -10.97036 -10.51907 -10.27117 -10.18927 -8.64875 -7.86274 -5.31493 0.13687 0.77315 1.23337 1.46191 1.47290 1.57297 1.63148 2.16961 2.51823 2.75567 3.03087 3.11156 3.27858 3.57329 3.67452 3.74855 3.81986 3.86650 3.94095 3.95482 4.13576 4.15091 4.31812 4.38488 4.43822 4.49327 4.55092 4.60982 4.65520 4.68010 4.74052 4.77195 4.79538 4.90005 4.91732 5.01945 5.04172 5.05334 5.05757 5.12375 5.18389 5.29319 5.32630 5.38830 5.43285 5.49375 5.58288 5.68942 5.83481 6.37012 6.41043 7.02512 7.09599 7.17006 7.89454 8.40535 9.19682 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020285 B = 0.001853 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.012849 B =15110.591829 C =15759.085803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.054 3.946 3 N -0.374 5.374 4 O 0.092 5.908 5 C 0.064 3.936 6 C -0.116 4.116 7 C -0.143 4.143 8 C -0.156 4.156 9 C -0.268 4.268 10 C 0.605 3.395 11 O -0.566 6.566 12 N -0.699 5.699 13 C 0.122 3.878 14 C -0.108 4.108 15 C -0.070 4.070 16 C -0.118 4.118 17 C 0.137 3.863 18 N -0.612 5.612 19 C -0.261 4.261 20 H 0.064 0.936 21 C -0.053 4.053 22 N -0.936 5.936 23 Si 0.966 3.034 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.270 1.270 27 C 0.174 3.826 28 C -0.120 4.120 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.145 0.855 33 H 0.107 0.893 34 H 0.130 0.870 35 H 0.124 0.876 36 H 0.096 0.904 37 H 0.416 0.584 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.076 0.924 45 H 0.009 0.991 46 H 0.047 0.953 47 H 0.249 0.751 48 H -0.008 1.008 49 H 0.050 0.950 50 H 0.070 0.930 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.631 25.425 -7.821 29.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 N -0.083 5.083 4 O 0.033 5.967 5 C 0.001 3.999 6 C -0.135 4.135 7 C -0.180 4.180 8 C -0.194 4.194 9 C -0.276 4.276 10 C 0.390 3.610 11 O -0.445 6.445 12 N -0.350 5.350 13 C -0.001 4.001 14 C -0.146 4.146 15 C -0.089 4.089 16 C -0.156 4.156 17 C 0.012 3.988 18 N -0.336 5.336 19 C -0.392 4.392 20 H 0.081 0.919 21 C -0.248 4.248 22 N -0.582 5.582 23 Si 0.794 3.206 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.195 1.195 27 C 0.048 3.952 28 C -0.159 4.159 29 H 0.123 0.877 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.163 0.837 33 H 0.125 0.875 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.114 0.886 37 H 0.253 0.747 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.094 0.906 45 H 0.027 0.973 46 H 0.066 0.934 47 H 0.059 0.941 48 H 0.010 0.990 49 H 0.068 0.932 50 H 0.089 0.911 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.377 26.187 -8.456 29.778 hybrid contribution -0.861 -1.586 0.860 1.999 sum 10.516 24.601 -7.596 27.812 Atomic orbital electron populations 1.20374 0.83430 1.04748 1.05182 1.25176 0.99705 0.86058 0.99842 1.73626 0.89365 1.23732 1.21555 1.84484 1.21371 1.22664 1.68189 1.23961 0.96172 0.83164 0.96610 1.20721 0.83648 0.99999 1.09182 1.23226 0.95688 1.00178 0.98886 1.23235 0.99876 1.04406 0.91835 1.21779 0.93289 0.94884 1.17617 1.16912 0.76224 0.84034 0.83863 1.90829 1.52031 1.68775 1.32876 1.45887 1.69302 1.11654 1.08207 1.21479 1.00888 0.79456 0.98293 1.21705 1.03285 0.94994 0.94629 1.20878 0.96667 0.95289 0.96044 1.21977 0.96914 0.96153 1.00585 1.21083 0.98307 0.93548 0.85888 1.44352 1.13113 1.63556 1.12570 1.19499 0.87776 1.12736 1.19172 0.91877 1.25806 0.98793 0.96910 1.03338 1.70193 1.22133 1.29255 1.36630 0.85298 0.78927 0.78118 0.78237 1.21266 1.21757 1.19527 1.20615 0.85654 0.92417 0.96502 1.22012 1.00639 0.96697 0.96576 0.87693 0.88905 0.89914 0.83713 0.87500 0.85209 0.85792 0.88569 0.74749 0.91607 0.91701 0.89602 0.90367 0.92033 0.92509 0.90571 0.97323 0.93404 0.94150 0.99003 0.93160 0.91115 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.14 10.49 71.24 0.75 -0.39 16 2 C 0.05 1.08 7.59 45.16 0.34 1.42 16 3 N -0.37 -8.01 12.01 -44.78 -0.54 -8.55 16 4 O 0.09 1.78 10.86 76.98 0.84 2.62 16 5 C 0.06 1.14 7.00 25.48 0.18 1.31 16 6 C -0.12 -1.42 6.15 -11.54 -0.07 -1.49 16 7 C -0.14 -1.06 10.18 30.59 0.31 -0.75 16 8 C -0.16 -1.51 10.23 30.59 0.31 -1.19 16 9 C -0.27 -5.47 6.24 -18.74 -0.12 -5.58 16 10 C 0.61 13.71 7.63 86.66 0.66 14.37 16 11 O -0.57 -17.65 17.11 -4.07 -0.07 -17.72 16 12 N -0.70 -12.08 5.55 -466.40 -2.59 -14.67 16 13 C 0.12 2.41 5.43 86.38 0.47 2.88 16 14 C -0.11 -2.07 4.80 30.59 0.15 -1.93 16 15 C -0.07 -1.96 2.15 -10.77 -0.02 -1.98 16 16 C -0.12 -3.67 5.14 30.67 0.16 -3.52 16 17 C 0.14 5.70 6.52 86.36 0.56 6.26 16 18 N -0.61 -30.90 2.99 -699.11 -2.09 -33.00 16 19 C -0.26 -14.55 9.58 84.03 0.81 -13.74 16 20 H 0.06 3.44 7.88 -2.91 -0.02 3.41 16 21 C -0.05 -3.01 4.92 84.86 0.42 -2.59 16 22 N -0.94 -55.77 11.19 21.65 0.24 -55.53 16 23 Si 0.97 45.04 29.59 68.60 2.03 47.07 16 24 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 25 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 27 C 0.17 8.27 5.30 86.36 0.46 8.73 16 28 C -0.12 -4.13 5.36 30.67 0.16 -3.96 16 29 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.15 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.11 0.80 8.02 -2.38 -0.02 0.79 16 34 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.42 5.02 8.46 -92.71 -0.78 4.23 16 38 H 0.07 1.47 6.54 -2.39 -0.02 1.46 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 42 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.08 2.03 6.50 -2.39 -0.02 2.01 16 45 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.05 1.98 7.93 -2.39 -0.02 1.96 16 47 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 48 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 49 H 0.05 2.73 6.07 -2.39 -0.01 2.72 16 50 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 51 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -73.08 415.33 3.49 -69.59 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 0.15 Total: 12.35 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 5.52 Total: -2.16 kcal Atomic # 7 Polarization: -106.78 SS G_CDS: -4.98 Total: -111.75 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: 0.77 Total: -15.10 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -73.08 3.49 -69.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495520637.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.080 kcal (2) G-P(sol) polarization free energy of solvation -73.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds