Wall clock time and date at job start Wed Apr 1 2020 04:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34872 * 119.10533 * 2 1 4 4 C 1.41658 * 119.34377 * 180.24054 * 3 2 1 5 5 O 1.22085 * 121.06997 * 179.73227 * 4 3 2 6 6 C 1.47106 * 117.86263 * 359.75348 * 4 3 2 7 7 C 1.47292 * 120.88069 * 179.97438 * 6 4 3 8 8 O 1.21625 * 120.00180 * 0.02562 * 7 6 4 9 9 N 1.34776 * 120.00058 * 180.02562 * 7 6 4 10 10 C 1.46498 * 120.00090 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.46973 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.45951 * 60.02888 * 11 10 9 13 13 C 1.53035 * 109.46120 * 300.07277 * 11 10 9 14 14 C 1.53193 * 109.31552 * 178.61717 * 13 11 10 15 15 N 1.46932 * 108.77760 * 54.62923 * 14 13 11 16 16 C 1.36933 * 120.63312 * 126.41878 * 15 14 13 17 17 H 1.07996 * 120.00001 * 207.58266 * 16 15 14 18 18 C 1.38814 * 119.99803 * 27.57304 * 16 15 14 19 19 N 1.31619 * 120.00115 * 17.52846 * 18 16 15 20 20 Si 1.86800 * 119.99989 * 197.52326 * 18 16 15 21 21 H 1.48501 * 109.46998 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47327 * 120.00295 * 20 18 16 23 23 H 1.48503 * 109.47269 * 240.00395 * 20 18 16 24 24 C 1.46931 * 118.73612 * 306.39808 * 15 14 13 25 25 C 1.53037 * 109.46086 * 179.97438 * 11 10 9 26 26 C 1.37985 * 118.23720 * 359.97438 * 6 4 3 27 27 N 1.34354 * 120.36779 * 359.97438 * 26 6 4 28 28 C 1.46502 * 118.80004 * 179.97438 * 27 26 6 29 29 H 1.09000 * 109.46871 * 264.31096 * 1 2 3 30 30 H 1.09004 * 109.46752 * 24.30926 * 1 2 3 31 31 H 1.08995 * 109.47073 * 144.30770 * 1 2 3 32 32 H 1.08009 * 120.32784 * 0.02562 * 3 2 1 33 33 H 0.97005 * 119.99707 * 0.02562 * 9 7 6 34 34 H 1.08999 * 109.46988 * 299.99649 * 10 9 7 35 35 H 1.08992 * 109.47045 * 60.00268 * 10 9 7 36 36 H 1.08998 * 109.47065 * 59.99662 * 12 11 10 37 37 H 1.09000 * 109.47169 * 179.97438 * 12 11 10 38 38 H 1.08996 * 109.46806 * 299.99793 * 12 11 10 39 39 H 1.09007 * 109.49422 * 298.56028 * 13 11 10 40 40 H 1.08992 * 109.50222 * 58.66048 * 13 11 10 41 41 H 1.09004 * 109.58206 * 294.84513 * 14 13 11 42 42 H 1.08999 * 109.59330 * 174.42068 * 14 13 11 43 43 H 0.96993 * 119.99844 * 180.02562 * 19 18 16 44 44 H 1.09006 * 109.58616 * 293.81455 * 24 15 14 45 45 H 1.09001 * 109.70176 * 173.46531 * 24 15 14 46 46 H 1.09001 * 109.50153 * 301.34319 * 25 11 10 47 47 H 1.09000 * 109.49498 * 61.43682 * 25 11 10 48 48 H 1.08000 * 119.81479 * 180.02562 * 26 6 4 49 49 H 1.09002 * 109.46940 * 95.97699 * 28 27 26 50 50 H 1.08998 * 109.47230 * 335.97757 * 28 27 26 51 51 H 1.08992 * 109.47139 * 215.97545 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1630 1.1784 0.0000 4 6 3.5796 1.1843 -0.0052 5 8 4.2053 2.2326 -0.0102 6 6 4.2725 -0.1133 -0.0048 7 6 5.7437 -0.1848 -0.0106 8 8 6.4022 0.8378 -0.0153 9 7 6.3602 -1.3833 -0.0106 10 6 7.8234 -1.4543 -0.0169 11 6 8.2629 -2.9198 -0.0149 12 6 7.7134 -3.6184 -1.2604 13 6 7.7223 -3.6125 1.2380 14 6 8.1349 -5.0877 1.2194 15 7 9.5940 -5.1688 1.0670 16 6 10.3491 -5.8897 1.9531 17 1 11.3784 -5.6165 2.1328 18 6 9.7915 -6.9716 2.6206 19 7 8.6825 -7.5210 2.1724 20 14 10.6150 -7.6480 4.1548 21 1 11.8386 -6.8595 4.4482 22 1 9.6778 -7.5523 5.3027 23 1 10.9829 -9.0696 3.9334 24 6 10.2275 -4.4619 -0.0545 25 6 9.7914 -2.9938 -0.0222 26 6 3.5077 -1.2618 0.0012 27 7 2.1664 -1.1846 0.0069 28 6 1.3880 -2.4258 0.0125 29 1 -0.3633 -0.1019 1.0226 30 1 -0.3633 0.9366 -0.4231 31 1 -0.3633 -0.8346 -0.5995 32 1 1.6138 2.1084 0.0004 33 1 5.8350 -2.1988 -0.0072 34 1 8.2073 -0.9607 -0.9097 35 1 8.2151 -0.9568 0.8702 36 1 8.0976 -3.1249 -2.1531 37 1 8.0267 -4.6624 -1.2594 38 1 6.6247 -3.5654 -1.2561 39 1 8.1329 -3.1312 2.1256 40 1 6.6349 -3.5391 1.2539 41 1 7.6516 -5.5917 0.3824 42 1 7.8383 -5.5621 2.1549 43 1 8.2927 -8.2767 2.6390 44 1 9.9149 -4.9150 -0.9954 45 1 11.3119 -4.5232 0.0379 46 1 10.1764 -2.4800 -0.9031 47 1 10.1829 -2.5182 0.8770 48 1 3.9900 -2.2281 0.0020 49 1 1.1088 -2.6749 1.0363 50 1 1.9883 -3.2330 -0.4070 51 1 0.4878 -2.2928 -0.5874 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500431163.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:02 Heat of formation + Delta-G solvation = -13.421151 kcal Electronic energy + Delta-G solvation = -31274.189194 eV Core-core repulsion = 27174.760429 eV Total energy + Delta-G solvation = -4099.428765 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.50068 -39.64872 -38.47179 -37.69177 -34.95094 -33.92646 -33.21973 -32.58893 -30.86562 -29.94714 -28.77962 -27.27315 -27.09952 -26.44953 -24.55194 -23.90136 -22.40476 -21.91542 -20.83856 -20.47595 -18.48611 -17.97679 -17.80212 -16.60113 -16.43702 -16.37333 -16.01431 -15.37865 -15.05436 -14.85532 -14.67341 -14.16830 -14.03595 -13.94311 -13.83325 -13.64210 -13.53086 -13.45856 -13.29769 -13.23772 -12.83299 -12.77310 -12.58679 -12.33093 -12.20892 -11.90945 -11.48899 -11.31086 -11.20433 -10.79110 -10.71600 -10.52408 -10.20335 -10.18197 -9.96370 -9.81010 -9.79890 -9.55382 -9.42315 -9.21386 -8.83582 -8.46983 -8.17421 -6.67474 -5.81666 -3.22104 0.61416 1.04330 2.00352 3.01268 3.28760 3.34984 3.43480 3.46133 3.70596 3.78844 4.06145 4.17094 4.37228 4.47512 4.48259 4.70577 4.78628 4.81737 4.88455 5.02527 5.15862 5.19731 5.22482 5.23687 5.38697 5.41998 5.49334 5.51388 5.79034 5.90101 5.97506 6.07147 6.08657 6.15723 6.18405 6.24828 6.31029 6.46069 6.46520 6.48465 6.56780 6.66878 6.71210 6.78418 6.87005 6.99934 7.33910 7.62730 7.68503 7.78602 8.04872 8.43024 8.48457 9.19945 9.83666 10.40046 11.26837 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014515 B = 0.002512 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.597560 B =11145.982851 C =12251.941380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.155 3.845 3 C -0.270 4.270 4 C 0.408 3.592 5 O -0.481 6.481 6 C -0.296 4.296 7 C 0.569 3.431 8 O -0.516 6.516 9 N -0.727 5.727 10 C 0.132 3.868 11 C -0.064 4.064 12 C -0.140 4.140 13 C -0.129 4.129 14 C 0.172 3.828 15 N -0.591 5.591 16 C -0.247 4.247 17 H 0.065 0.935 18 C 0.000 4.000 19 N -0.904 5.904 20 Si 0.900 3.100 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.146 3.854 25 C -0.120 4.120 26 C 0.173 3.827 27 N -0.471 5.471 28 C 0.046 3.954 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.152 0.848 33 H 0.392 0.608 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.041 0.959 39 H 0.057 0.943 40 H 0.042 0.958 41 H 0.020 0.980 42 H 0.085 0.915 43 H 0.252 0.748 44 H 0.020 0.980 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.061 0.939 48 H 0.167 0.833 49 H 0.084 0.916 50 H 0.096 0.904 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.811 8.131 -6.758 23.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.049 3.951 3 C -0.294 4.294 4 C 0.293 3.707 5 O -0.361 6.361 6 C -0.307 4.307 7 C 0.355 3.645 8 O -0.391 6.391 9 N -0.381 5.381 10 C 0.009 3.991 11 C -0.065 4.065 12 C -0.198 4.198 13 C -0.168 4.168 14 C 0.046 3.954 15 N -0.314 5.314 16 C -0.377 4.377 17 H 0.083 0.917 18 C -0.198 4.198 19 N -0.549 5.549 20 Si 0.730 3.270 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.218 1.218 24 C 0.020 3.980 25 C -0.160 4.160 26 C 0.043 3.957 27 N -0.158 5.158 28 C -0.095 4.095 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.169 0.831 33 H 0.227 0.773 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.038 0.962 42 H 0.103 0.897 43 H 0.062 0.938 44 H 0.038 0.962 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.079 0.921 48 H 0.184 0.816 49 H 0.103 0.897 50 H 0.114 0.886 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -20.168 9.141 -6.689 23.131 hybrid contribution 0.006 -1.062 0.860 1.366 sum -20.163 8.079 -5.829 22.490 Atomic orbital electron populations 1.21190 0.88046 1.05028 1.04164 1.20276 0.94873 0.84989 0.94972 1.22281 0.96329 0.97184 1.13601 1.18149 0.88225 0.87899 0.76400 1.90823 1.69942 1.33221 1.42164 1.22587 0.94508 0.95095 1.18545 1.17485 0.86070 0.83693 0.77211 1.90846 1.65873 1.34009 1.48356 1.46012 1.08205 1.07478 1.76428 1.21504 0.78617 0.97171 1.01803 1.20697 0.96853 0.92315 0.96589 1.21930 0.99211 1.02156 0.96461 1.22245 0.97783 1.00714 0.96058 1.20791 0.83776 0.89415 1.01428 1.44038 1.02649 1.56961 1.27764 1.19244 0.96044 1.06326 1.16103 0.91687 1.24998 0.98281 0.96029 1.00456 1.70038 1.22121 1.23627 1.39134 0.86256 0.78895 0.78460 0.83391 1.20264 1.21637 1.21794 1.20914 0.96489 0.89665 0.90970 1.21996 0.93294 0.99885 1.00842 1.22261 0.82183 0.99999 0.91293 1.42568 1.05289 1.07285 1.60635 1.22587 0.97866 0.84320 1.04709 0.89283 0.88889 0.90078 0.83069 0.77272 0.91903 0.91684 0.93318 0.90763 0.94015 0.92454 0.93983 0.96205 0.89685 0.93835 0.96175 0.92905 0.92850 0.92058 0.81576 0.89737 0.88568 0.88774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.28 9.34 36.00 0.34 0.06 16 2 C 0.15 0.99 6.64 -82.13 -0.55 0.44 16 3 C -0.27 -2.74 9.57 -39.47 -0.38 -3.12 16 4 C 0.41 6.24 6.96 -34.68 -0.24 6.00 16 5 O -0.48 -9.80 16.41 -15.17 -0.25 -10.05 16 6 C -0.30 -3.97 6.05 -102.71 -0.62 -4.59 16 7 C 0.57 9.33 7.77 -12.58 -0.10 9.23 16 8 O -0.52 -11.05 15.57 -14.76 -0.23 -11.28 16 9 N -0.73 -9.91 4.90 -61.43 -0.30 -10.21 16 10 C 0.13 2.00 4.56 -4.04 -0.02 1.98 16 11 C -0.06 -0.99 0.53 -154.47 -0.08 -1.07 16 12 C -0.14 -1.99 7.54 37.16 0.28 -1.71 16 13 C -0.13 -2.24 4.75 -26.61 -0.13 -2.37 16 14 C 0.17 3.78 4.84 -3.71 -0.02 3.76 16 15 N -0.59 -14.13 3.00 -172.31 -0.52 -14.65 16 16 C -0.25 -6.63 9.59 -15.06 -0.14 -6.77 16 17 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 18 C 0.00 0.01 4.91 -17.43 -0.09 -0.07 16 19 N -0.90 -25.28 11.19 55.49 0.62 -24.66 16 20 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.15 2.93 6.04 -3.71 -0.02 2.90 16 25 C -0.12 -2.03 4.91 -26.62 -0.13 -2.16 16 26 C 0.17 1.41 9.80 -16.54 -0.16 1.24 16 27 N -0.47 -2.68 2.97 -119.75 -0.36 -3.03 16 28 C 0.05 0.07 9.99 59.85 0.60 0.66 16 29 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.09 0.16 7.98 -51.93 -0.41 -0.25 16 31 H 0.08 0.03 6.00 -51.93 -0.31 -0.28 16 32 H 0.15 1.31 8.01 -52.48 -0.42 0.89 16 33 H 0.39 4.25 4.23 -40.82 -0.17 4.07 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 1.22 4.98 -51.93 -0.26 0.97 16 38 H 0.04 0.50 6.86 -51.93 -0.36 0.14 16 39 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 40 H 0.04 0.62 6.82 -51.93 -0.35 0.26 16 41 H 0.02 0.45 6.69 -51.93 -0.35 0.10 16 42 H 0.08 2.15 6.03 -51.93 -0.31 1.84 16 43 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 44 H 0.02 0.41 6.69 -51.93 -0.35 0.06 16 45 H 0.05 1.06 7.94 -51.93 -0.41 0.65 16 46 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 48 H 0.17 0.86 6.28 -52.49 -0.33 0.53 16 49 H 0.08 0.06 8.14 -51.93 -0.42 -0.37 16 50 H 0.10 0.04 7.86 -51.93 -0.41 -0.37 16 51 H 0.09 -0.04 5.92 -51.93 -0.31 -0.34 16 LS Contribution 392.37 15.07 5.91 5.91 Total: -1.00 -38.57 392.37 -9.29 -47.86 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -7.68 Total: -0.64 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -1.46 Total: 4.43 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.55 Total: -52.56 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.48 Total: -21.33 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -38.57 -9.29 -47.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500431163.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.442 kcal (2) G-P(sol) polarization free energy of solvation -38.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds