Wall clock time and date at job start Wed Apr 1 2020 04:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34872 * 119.10533 * 2 1 4 4 C 1.41658 * 119.34377 * 180.24054 * 3 2 1 5 5 O 1.22085 * 121.06997 * 179.73227 * 4 3 2 6 6 C 1.47106 * 117.86263 * 359.75348 * 4 3 2 7 7 C 1.47292 * 120.88069 * 179.97438 * 6 4 3 8 8 O 1.21625 * 120.00180 * 0.02562 * 7 6 4 9 9 N 1.34776 * 120.00058 * 180.02562 * 7 6 4 10 10 C 1.46498 * 120.00090 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.46973 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.45951 * 60.02888 * 11 10 9 13 13 C 1.53035 * 109.46120 * 300.07277 * 11 10 9 14 14 C 1.53193 * 109.31552 * 178.61717 * 13 11 10 15 15 N 1.46932 * 108.77760 * 54.62923 * 14 13 11 16 16 C 1.36933 * 120.63312 * 126.41878 * 15 14 13 17 17 H 1.07996 * 120.00001 * 207.58266 * 16 15 14 18 18 C 1.38814 * 119.99803 * 27.57304 * 16 15 14 19 19 N 1.31619 * 120.00115 * 17.52846 * 18 16 15 20 20 Si 1.86800 * 119.99989 * 197.52326 * 18 16 15 21 21 H 1.48501 * 109.46998 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47327 * 120.00295 * 20 18 16 23 23 H 1.48503 * 109.47269 * 240.00395 * 20 18 16 24 24 C 1.46931 * 118.73612 * 306.39808 * 15 14 13 25 25 C 1.53037 * 109.46086 * 179.97438 * 11 10 9 26 26 C 1.37985 * 118.23720 * 359.97438 * 6 4 3 27 27 N 1.34354 * 120.36779 * 359.97438 * 26 6 4 28 28 C 1.46502 * 118.80004 * 179.97438 * 27 26 6 29 29 H 1.09000 * 109.46871 * 264.31096 * 1 2 3 30 30 H 1.09004 * 109.46752 * 24.30926 * 1 2 3 31 31 H 1.08995 * 109.47073 * 144.30770 * 1 2 3 32 32 H 1.08009 * 120.32784 * 0.02562 * 3 2 1 33 33 H 0.97005 * 119.99707 * 0.02562 * 9 7 6 34 34 H 1.08999 * 109.46988 * 299.99649 * 10 9 7 35 35 H 1.08992 * 109.47045 * 60.00268 * 10 9 7 36 36 H 1.08998 * 109.47065 * 59.99662 * 12 11 10 37 37 H 1.09000 * 109.47169 * 179.97438 * 12 11 10 38 38 H 1.08996 * 109.46806 * 299.99793 * 12 11 10 39 39 H 1.09007 * 109.49422 * 298.56028 * 13 11 10 40 40 H 1.08992 * 109.50222 * 58.66048 * 13 11 10 41 41 H 1.09004 * 109.58206 * 294.84513 * 14 13 11 42 42 H 1.08999 * 109.59330 * 174.42068 * 14 13 11 43 43 H 0.96993 * 119.99844 * 180.02562 * 19 18 16 44 44 H 1.09006 * 109.58616 * 293.81455 * 24 15 14 45 45 H 1.09001 * 109.70176 * 173.46531 * 24 15 14 46 46 H 1.09001 * 109.50153 * 301.34319 * 25 11 10 47 47 H 1.09000 * 109.49498 * 61.43682 * 25 11 10 48 48 H 1.08000 * 119.81479 * 180.02562 * 26 6 4 49 49 H 1.09002 * 109.46940 * 95.97699 * 28 27 26 50 50 H 1.08998 * 109.47230 * 335.97757 * 28 27 26 51 51 H 1.08992 * 109.47139 * 215.97545 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1630 1.1784 0.0000 4 6 3.5796 1.1843 -0.0052 5 8 4.2053 2.2326 -0.0102 6 6 4.2725 -0.1133 -0.0048 7 6 5.7437 -0.1848 -0.0106 8 8 6.4022 0.8378 -0.0153 9 7 6.3602 -1.3833 -0.0106 10 6 7.8234 -1.4543 -0.0169 11 6 8.2629 -2.9198 -0.0149 12 6 7.7134 -3.6184 -1.2604 13 6 7.7223 -3.6125 1.2380 14 6 8.1349 -5.0877 1.2194 15 7 9.5940 -5.1688 1.0670 16 6 10.3491 -5.8897 1.9531 17 1 11.3784 -5.6165 2.1328 18 6 9.7915 -6.9716 2.6206 19 7 8.6825 -7.5210 2.1724 20 14 10.6150 -7.6480 4.1548 21 1 11.8386 -6.8595 4.4482 22 1 9.6778 -7.5523 5.3027 23 1 10.9829 -9.0696 3.9334 24 6 10.2275 -4.4619 -0.0545 25 6 9.7914 -2.9938 -0.0222 26 6 3.5077 -1.2618 0.0012 27 7 2.1664 -1.1846 0.0069 28 6 1.3880 -2.4258 0.0125 29 1 -0.3633 -0.1019 1.0226 30 1 -0.3633 0.9366 -0.4231 31 1 -0.3633 -0.8346 -0.5995 32 1 1.6138 2.1084 0.0004 33 1 5.8350 -2.1988 -0.0072 34 1 8.2073 -0.9607 -0.9097 35 1 8.2151 -0.9568 0.8702 36 1 8.0976 -3.1249 -2.1531 37 1 8.0267 -4.6624 -1.2594 38 1 6.6247 -3.5654 -1.2561 39 1 8.1329 -3.1312 2.1256 40 1 6.6349 -3.5391 1.2539 41 1 7.6516 -5.5917 0.3824 42 1 7.8383 -5.5621 2.1549 43 1 8.2927 -8.2767 2.6390 44 1 9.9149 -4.9150 -0.9954 45 1 11.3119 -4.5232 0.0379 46 1 10.1764 -2.4800 -0.9031 47 1 10.1829 -2.5182 0.8770 48 1 3.9900 -2.2281 0.0020 49 1 1.1088 -2.6749 1.0363 50 1 1.9883 -3.2330 -0.4070 51 1 0.4878 -2.2928 -0.5874 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500431163.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:01 Heat of formation + Delta-G solvation = -39.421346 kcal Electronic energy + Delta-G solvation = -31275.316647 eV Core-core repulsion = 27174.760429 eV Total energy + Delta-G solvation = -4100.556218 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.24058 -40.89323 -39.75686 -38.82919 -36.53841 -34.93878 -34.21396 -33.59246 -32.51677 -31.55998 -29.51069 -28.54132 -27.76364 -27.58460 -25.79497 -25.12872 -23.91165 -22.99727 -22.19315 -21.61833 -19.69723 -19.27963 -18.59825 -18.14883 -17.26855 -17.02156 -16.95034 -16.71839 -16.56394 -16.23988 -15.71266 -15.54080 -15.46746 -15.06620 -15.00275 -14.73097 -14.63947 -14.43703 -14.23053 -13.97463 -13.83878 -13.82759 -13.42640 -13.32320 -13.14295 -12.95394 -12.67785 -12.65618 -12.56265 -12.50825 -12.31498 -12.20758 -11.87254 -11.77995 -11.44716 -11.25611 -11.06098 -11.02480 -10.50919 -10.46746 -10.32267 -10.06608 -9.05462 -8.60386 -7.84785 -5.26879 -0.21399 0.32465 1.45357 1.46560 1.48747 1.57983 1.90054 2.16677 2.52926 2.79029 3.21388 3.28973 3.59282 3.63762 3.74343 3.78961 3.82870 3.89088 3.97073 4.21064 4.24248 4.42827 4.43868 4.47463 4.53612 4.64127 4.72563 4.73275 4.74203 4.80562 4.83803 4.85998 4.87353 4.88293 4.98179 5.09947 5.15254 5.16217 5.28510 5.31959 5.33647 5.42212 5.45082 5.52514 5.59253 5.69911 5.70603 5.80045 5.89190 6.43635 6.60017 7.09226 7.20463 7.33470 7.92694 8.42528 9.20946 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014515 B = 0.002512 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.597560 B =11145.982851 C =12251.941380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.187 3.813 3 C -0.304 4.304 4 C 0.382 3.618 5 O -0.568 6.568 6 C -0.352 4.352 7 C 0.567 3.433 8 O -0.581 6.581 9 N -0.710 5.710 10 C 0.142 3.858 11 C -0.052 4.052 12 C -0.135 4.135 13 C -0.117 4.117 14 C 0.180 3.820 15 N -0.610 5.610 16 C -0.260 4.260 17 H 0.058 0.942 18 C -0.046 4.046 19 N -0.928 5.928 20 Si 0.958 3.042 21 H -0.274 1.274 22 H -0.289 1.289 23 H -0.292 1.292 24 C 0.144 3.856 25 C -0.115 4.115 26 C 0.219 3.781 27 N -0.455 5.455 28 C 0.030 3.970 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.155 0.845 33 H 0.408 0.592 34 H 0.062 0.938 35 H 0.045 0.955 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.037 0.963 40 H 0.075 0.925 41 H 0.015 0.985 42 H 0.049 0.951 43 H 0.250 0.750 44 H 0.026 0.974 45 H 0.045 0.955 46 H 0.078 0.922 47 H 0.047 0.953 48 H 0.207 0.793 49 H 0.103 0.897 50 H 0.116 0.884 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.427 5.867 -7.437 26.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.079 3.921 3 C -0.327 4.327 4 C 0.276 3.724 5 O -0.457 6.457 6 C -0.362 4.362 7 C 0.357 3.643 8 O -0.461 6.461 9 N -0.365 5.365 10 C 0.018 3.982 11 C -0.053 4.053 12 C -0.193 4.193 13 C -0.156 4.156 14 C 0.055 3.945 15 N -0.334 5.334 16 C -0.390 4.390 17 H 0.076 0.924 18 C -0.242 4.242 19 N -0.574 5.574 20 Si 0.787 3.213 21 H -0.199 1.199 22 H -0.216 1.216 23 H -0.219 1.219 24 C 0.019 3.981 25 C -0.154 4.154 26 C 0.084 3.916 27 N -0.138 5.138 28 C -0.108 4.108 29 H 0.127 0.873 30 H 0.117 0.883 31 H 0.131 0.869 32 H 0.173 0.827 33 H 0.246 0.754 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.056 0.944 40 H 0.093 0.907 41 H 0.033 0.967 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.044 0.956 45 H 0.064 0.936 46 H 0.097 0.903 47 H 0.066 0.934 48 H 0.223 0.777 49 H 0.122 0.878 50 H 0.135 0.865 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -23.856 6.802 -7.381 25.882 hybrid contribution 0.955 -0.557 1.045 1.522 sum -22.901 6.245 -6.336 24.568 Atomic orbital electron populations 1.21407 0.83943 1.06877 1.06041 1.20852 0.97063 0.83894 0.90266 1.22152 0.94054 0.99440 1.17060 1.18948 0.90360 0.87811 0.75316 1.90765 1.71717 1.35575 1.47630 1.22198 0.93250 0.96303 1.24471 1.17964 0.87356 0.83206 0.75810 1.90804 1.67467 1.36232 1.51609 1.45766 1.07551 1.07500 1.75646 1.21267 0.79572 0.96342 1.00969 1.20557 0.95842 0.92359 0.96530 1.21872 1.01080 1.00431 0.95871 1.22069 0.99800 0.97402 0.96301 1.20623 0.82863 0.91813 0.99232 1.44301 1.03429 1.57082 1.28580 1.19478 0.96187 1.06533 1.16840 0.92420 1.25624 0.99157 0.96590 1.02815 1.70149 1.23202 1.24023 1.40047 0.85347 0.78068 0.77569 0.80292 1.19874 1.21619 1.21865 1.21017 0.95991 0.91146 0.89941 1.21902 0.94506 0.97561 1.01444 1.22635 0.83051 0.99545 0.86342 1.43196 1.04953 1.09055 1.56590 1.23146 0.98664 0.82173 1.06859 0.87255 0.88271 0.86853 0.82717 0.75365 0.91943 0.93625 0.91969 0.92946 0.91170 0.94387 0.90651 0.96730 0.93245 0.94116 0.95587 0.93636 0.90319 0.93379 0.77658 0.87810 0.86528 0.85929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.13 9.34 71.24 0.67 0.79 16 2 C 0.19 1.73 6.64 41.21 0.27 2.00 16 3 C -0.30 -6.17 9.57 22.34 0.21 -5.96 16 4 C 0.38 12.59 6.96 25.44 0.18 12.77 16 5 O -0.57 -25.99 16.41 13.54 0.22 -25.77 16 6 C -0.35 -9.43 6.05 -18.63 -0.11 -9.54 16 7 C 0.57 19.10 7.77 86.62 0.67 19.77 16 8 O -0.58 -26.81 15.57 15.03 0.23 -26.58 16 9 N -0.71 -18.37 4.90 -466.51 -2.29 -20.65 16 10 C 0.14 4.20 4.56 86.38 0.39 4.60 16 11 C -0.05 -1.53 0.53 -52.16 -0.03 -1.56 16 12 C -0.14 -3.43 7.54 71.98 0.54 -2.89 16 13 C -0.12 -3.91 4.75 30.67 0.15 -3.76 16 14 C 0.18 7.87 4.84 86.36 0.42 8.29 16 15 N -0.61 -29.36 3.00 -699.07 -2.09 -31.46 16 16 C -0.26 -14.10 9.59 84.03 0.81 -13.29 16 17 H 0.06 3.14 7.89 -2.91 -0.02 3.11 16 18 C -0.05 -2.52 4.91 84.86 0.42 -2.10 16 19 N -0.93 -52.28 11.19 21.65 0.24 -52.04 16 20 Si 0.96 44.27 29.59 68.60 2.03 46.30 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 22 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 23 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 24 C 0.14 5.75 6.04 86.36 0.52 6.27 16 25 C -0.11 -3.76 4.91 30.67 0.15 -3.61 16 26 C 0.22 2.75 9.80 84.25 0.83 3.57 16 27 N -0.46 -2.91 2.97 -532.77 -1.58 -4.49 16 28 C 0.03 -0.13 9.99 127.77 1.28 1.15 16 29 H 0.11 -0.36 8.14 -2.39 -0.02 -0.38 16 30 H 0.10 -0.08 7.98 -2.39 -0.02 -0.10 16 31 H 0.11 -0.75 6.00 -2.39 -0.01 -0.76 16 32 H 0.16 2.83 8.01 -2.91 -0.02 2.81 16 33 H 0.41 7.38 4.23 -92.70 -0.39 6.99 16 34 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.05 1.60 4.98 -2.39 -0.01 1.59 16 38 H 0.07 1.36 6.86 -2.39 -0.02 1.34 16 39 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.08 1.99 6.82 -2.39 -0.02 1.98 16 41 H 0.01 0.65 6.69 -2.39 -0.02 0.64 16 42 H 0.05 2.52 6.03 -2.39 -0.01 2.50 16 43 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 44 H 0.03 1.02 6.69 -2.38 -0.02 1.00 16 45 H 0.05 1.84 7.94 -2.39 -0.02 1.82 16 46 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 47 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.21 0.91 6.28 -2.91 -0.02 0.89 16 49 H 0.10 -0.63 8.14 -2.39 -0.02 -0.65 16 50 H 0.12 -0.80 7.86 -2.39 -0.02 -0.82 16 51 H 0.12 -1.08 5.92 -2.39 -0.01 -1.09 16 Total: -1.00 -96.03 392.37 4.69 -91.34 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 0.56 Total: 6.85 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 7.36 Total: 16.49 kcal Atomic # 7 Polarization: -102.92 SS G_CDS: -5.72 Total: -108.64 kcal Atomic # 8 Polarization: -52.80 SS G_CDS: 0.46 Total: -52.34 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -96.03 4.69 -91.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500431163.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.921 kcal (2) G-P(sol) polarization free energy of solvation -96.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds