Wall clock time and date at job start Wed Apr 1 2020 04:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30014 * 127.33494 * 2 1 4 4 O 1.20658 * 112.30385 * 179.86029 * 3 2 1 5 5 C 1.33489 * 113.15498 * 0.42997 * 4 3 2 6 6 C 1.50702 * 126.83187 * 179.71049 * 5 4 3 7 7 C 1.52998 * 117.49373 * 8.79296 * 6 5 4 8 8 C 1.52995 * 117.49915 * 300.13414 * 6 5 4 9 9 C 1.37365 * 106.34253 * 359.74529 * 5 4 3 10 10 C 1.47393 * 128.56418 * 180.02562 * 9 5 4 11 11 O 1.21617 * 120.00013 * 270.02399 * 10 9 5 12 12 N 1.34777 * 120.00274 * 90.03015 * 10 9 5 13 13 C 1.46496 * 120.00090 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47171 * 179.97438 * 13 12 10 15 15 C 1.53007 * 109.49686 * 60.06461 * 14 13 12 16 16 C 1.53044 * 109.50081 * 180.15754 * 14 13 12 17 17 C 1.53038 * 109.54073 * 181.31813 * 16 14 13 18 18 C 1.53193 * 109.31445 * 298.63675 * 17 16 14 19 19 N 1.46934 * 108.77425 * 54.63296 * 18 17 16 20 20 C 1.36935 * 120.62795 * 126.41682 * 19 18 17 21 21 H 1.07996 * 120.00087 * 332.54834 * 20 19 18 22 22 C 1.38806 * 120.00024 * 152.55527 * 20 19 18 23 23 N 1.31624 * 120.00452 * 159.35418 * 22 20 19 24 24 Si 1.86804 * 119.99915 * 339.35410 * 22 20 19 25 25 H 1.48504 * 109.47008 * 92.94387 * 24 22 20 26 26 H 1.48500 * 109.47381 * 212.94372 * 24 22 20 27 27 H 1.48500 * 109.46956 * 332.94412 * 24 22 20 28 28 C 1.46924 * 118.73660 * 306.39234 * 19 18 17 29 29 H 1.08995 * 109.46933 * 269.67776 * 1 2 3 30 30 H 1.09000 * 109.47172 * 29.68318 * 1 2 3 31 31 H 1.09006 * 109.46792 * 149.68497 * 1 2 3 32 32 H 1.08997 * 115.54921 * 154.45610 * 6 5 4 33 33 H 1.08997 * 117.50511 * 359.97438 * 7 6 5 34 34 H 1.09001 * 117.49842 * 145.02273 * 7 6 5 35 35 H 1.08999 * 117.50213 * 214.98144 * 8 6 5 36 36 H 1.09004 * 117.49899 * 359.96682 * 8 6 5 37 37 H 0.96997 * 120.00030 * 359.97438 * 12 10 9 38 38 H 1.08997 * 109.47152 * 299.99242 * 13 12 10 39 39 H 1.09006 * 109.47462 * 59.99508 * 13 12 10 40 40 H 1.08996 * 109.47372 * 59.99792 * 15 14 13 41 41 H 1.09001 * 109.47310 * 180.02562 * 15 14 13 42 42 H 1.09001 * 109.46782 * 299.99956 * 15 14 13 43 43 H 1.08998 * 109.46106 * 301.34139 * 16 14 13 44 44 H 1.09000 * 109.45600 * 61.29723 * 16 14 13 45 45 H 1.09000 * 109.50057 * 178.68458 * 17 16 14 46 46 H 1.09003 * 109.52674 * 58.60142 * 17 16 14 47 47 H 1.09001 * 109.58446 * 294.84939 * 18 17 16 48 48 H 1.08991 * 109.58826 * 174.41898 * 18 17 16 49 49 H 0.96997 * 119.99797 * 179.97438 * 23 22 20 50 50 H 1.08994 * 109.59063 * 293.81771 * 28 19 18 51 51 H 1.09002 * 109.58436 * 173.39165 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 0.0027 5 6 3.6495 -0.6006 -0.0042 6 6 4.9713 -1.3245 -0.0093 7 6 6.2352 -0.4884 0.2010 8 6 5.9168 -1.0603 -1.1827 9 6 2.3992 -1.1696 -0.0064 10 6 2.0402 -2.5991 -0.0131 11 8 1.8922 -3.1840 -1.0691 12 7 1.8759 -3.2581 1.1510 13 6 1.5196 -4.6791 1.1444 14 6 1.3956 -5.1805 2.5845 15 6 0.3069 -4.3869 3.3096 16 6 1.0273 -6.6660 2.5783 17 6 0.8708 -7.1606 4.0181 18 6 2.2021 -6.9956 4.7580 19 7 2.6360 -5.5964 4.6443 20 6 2.9449 -4.8688 5.7625 21 1 2.4825 -5.1096 6.7082 22 6 3.8523 -3.8216 5.6803 23 7 3.8574 -2.8812 6.6012 24 14 5.0664 -3.7468 4.2625 25 1 4.4947 -2.9271 3.1640 26 1 6.3354 -3.1329 4.7293 27 1 5.3340 -5.1209 3.7671 28 6 2.7328 -4.9932 3.3081 29 1 -0.3633 -0.0058 1.0276 30 1 -0.3633 0.8928 -0.5089 31 1 -0.3633 -0.8872 -0.5188 32 1 4.9579 -2.3306 0.4097 33 1 6.1109 0.5851 0.3426 34 1 7.0537 -0.9448 0.7578 35 1 6.5258 -1.8926 -1.5357 36 1 5.5826 -0.3634 -1.9513 37 1 1.9942 -2.7917 1.9932 38 1 0.5681 -4.8127 0.6297 39 1 2.2947 -5.2457 0.6282 40 1 -0.6445 -4.5214 2.7951 41 1 0.2192 -4.7441 4.3357 42 1 0.5707 -3.3293 3.3148 43 1 0.0883 -6.8051 2.0425 44 1 1.8153 -7.2334 2.0830 45 1 0.5857 -8.2126 4.0125 46 1 0.1000 -6.5774 4.5219 47 1 2.9519 -7.6482 4.3109 48 1 2.0704 -7.2530 5.8089 49 1 4.4917 -2.1497 6.5439 50 1 3.5259 -5.4824 2.7428 51 1 2.9512 -3.9294 3.4024 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500508813.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:53 Heat of formation + Delta-G solvation = 66.477948 kcal Electronic energy + Delta-G solvation = -32587.757881 eV Core-core repulsion = 28491.793801 eV Total energy + Delta-G solvation = -4095.964080 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.94964 -39.89967 -38.58233 -37.58587 -35.02778 -34.64980 -33.30887 -32.00645 -31.37055 -30.64895 -28.92176 -26.91692 -26.35822 -25.40483 -24.31328 -23.65480 -22.67572 -22.51039 -20.77036 -20.50621 -19.64436 -18.56989 -17.97596 -17.72094 -16.85742 -16.61930 -16.09565 -15.97543 -15.36293 -14.90759 -14.49622 -14.39448 -14.02276 -13.73263 -13.61111 -13.55505 -13.51232 -13.42091 -13.23308 -12.97664 -12.54899 -12.24586 -12.22122 -12.06803 -11.83892 -11.74037 -11.58033 -11.31906 -11.26125 -11.10647 -10.81305 -10.69621 -10.62680 -10.45781 -10.22667 -10.10719 -9.97300 -9.88312 -9.70403 -9.51076 -9.27867 -9.01372 -8.68518 -7.03447 -6.02742 -3.38105 1.15952 1.82100 2.40309 2.65022 3.17182 3.30889 3.39421 3.41978 3.54147 3.95593 4.05666 4.42706 4.46063 4.58024 4.63246 4.71561 4.85850 5.02940 5.10188 5.15211 5.16271 5.26738 5.32296 5.35539 5.37174 5.42868 5.47131 5.54188 5.63977 5.68315 5.72631 5.75808 5.83284 5.86775 5.89677 5.91179 5.97969 6.18800 6.21941 6.28107 6.32169 6.41160 6.52323 6.54783 6.57483 6.66920 6.77033 6.97139 7.49062 7.88425 8.11872 8.14742 8.25580 8.86591 9.64169 10.02610 11.13107 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010173 B = 0.004434 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.742638 B = 6312.658784 C = 7468.273975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.057 3.943 3 N -0.355 5.355 4 O 0.096 5.904 5 C 0.056 3.944 6 C -0.098 4.098 7 C -0.161 4.161 8 C -0.154 4.154 9 C -0.246 4.246 10 C 0.600 3.400 11 O -0.531 6.531 12 N -0.710 5.710 13 C 0.130 3.870 14 C -0.093 4.093 15 C -0.129 4.129 16 C -0.095 4.095 17 C -0.137 4.137 18 C 0.146 3.854 19 N -0.602 5.602 20 C -0.257 4.257 21 H 0.086 0.914 22 C 0.024 3.976 23 N -0.906 5.906 24 Si 0.876 3.124 25 H -0.289 1.289 26 H -0.303 1.303 27 H -0.272 1.272 28 C 0.139 3.861 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.407 0.593 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.042 0.958 41 H 0.077 0.923 42 H 0.046 0.954 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.067 0.933 47 H 0.021 0.979 48 H 0.062 0.938 49 H 0.262 0.738 50 H 0.025 0.975 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.888 1.076 -13.423 13.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 N -0.062 5.062 4 O 0.035 5.965 5 C -0.007 4.007 6 C -0.117 4.117 7 C -0.198 4.198 8 C -0.191 4.191 9 C -0.253 4.253 10 C 0.384 3.616 11 O -0.408 6.408 12 N -0.362 5.362 13 C 0.007 3.993 14 C -0.096 4.096 15 C -0.186 4.186 16 C -0.133 4.133 17 C -0.176 4.176 18 C 0.020 3.980 19 N -0.325 5.325 20 C -0.385 4.385 21 H 0.104 0.896 22 C -0.175 4.175 23 N -0.548 5.548 24 Si 0.707 3.293 25 H -0.217 1.217 26 H -0.231 1.231 27 H -0.197 1.197 28 C 0.013 3.987 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.156 0.844 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.244 0.756 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.061 0.939 41 H 0.096 0.904 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.039 0.961 48 H 0.081 0.919 49 H 0.072 0.928 50 H 0.043 0.957 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.099 2.097 -14.054 14.544 hybrid contribution 0.746 -0.394 -0.288 0.892 sum -2.353 1.703 -14.342 14.633 Atomic orbital electron populations 1.20240 0.85038 1.04188 1.04036 1.24714 0.98568 0.86402 1.00820 1.73602 0.89001 1.23219 1.20391 1.84489 1.21570 1.22295 1.68142 1.23498 0.95513 0.83456 0.98281 1.20549 0.84264 0.99711 1.07199 1.23137 0.96879 1.00432 0.99322 1.23122 1.00527 1.03859 0.91574 1.21819 0.92526 0.95465 1.15533 1.16816 0.76902 0.83798 0.84087 1.90798 1.50772 1.68264 1.30987 1.46141 1.69643 1.11951 1.08496 1.21530 1.00646 0.79677 0.97470 1.21369 0.99278 0.96154 0.92769 1.21750 0.95990 0.99118 1.01760 1.21355 1.00477 0.94026 0.97486 1.22046 1.00205 0.99559 0.95763 1.20962 0.92607 0.85716 0.98671 1.44296 1.78505 1.07838 1.01850 1.18915 1.19705 1.10880 0.88988 0.89619 1.25273 0.98257 0.97177 0.96789 1.69829 1.37691 1.11312 1.36013 0.87047 0.82117 0.77795 0.82343 1.21655 1.23116 1.19697 1.21373 0.92671 0.98109 0.86547 0.89363 0.89909 0.89731 0.84403 0.87431 0.87200 0.87210 0.87966 0.75589 0.91253 0.91462 0.93894 0.90382 0.93471 0.92678 0.92376 0.92663 0.91467 0.96062 0.91920 0.92768 0.95747 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.49 36.01 0.38 -0.46 16 2 C 0.06 0.82 7.59 -79.77 -0.61 0.22 16 3 N -0.36 -5.37 12.01 34.78 0.42 -4.95 16 4 O 0.10 1.41 10.86 18.66 0.20 1.61 16 5 C 0.06 0.81 7.00 -34.62 -0.24 0.57 16 6 C -0.10 -1.25 6.15 -91.77 -0.56 -1.82 16 7 C -0.16 -1.66 10.19 -26.70 -0.27 -1.93 16 8 C -0.15 -1.50 10.24 -26.70 -0.27 -1.78 16 9 C -0.25 -3.80 6.24 -102.89 -0.64 -4.44 16 10 C 0.60 9.73 7.63 -12.53 -0.10 9.63 16 11 O -0.53 -9.84 17.11 5.26 0.09 -9.75 16 12 N -0.71 -11.02 4.99 -61.40 -0.31 -11.32 16 13 C 0.13 1.92 4.57 -4.05 -0.02 1.91 16 14 C -0.09 -1.47 0.53 -154.39 -0.08 -1.55 16 15 C -0.13 -2.04 7.81 37.16 0.29 -1.75 16 16 C -0.10 -1.34 4.71 -26.69 -0.13 -1.47 16 17 C -0.14 -2.02 5.74 -26.61 -0.15 -2.18 16 18 C 0.15 2.67 6.52 -3.71 -0.02 2.65 16 19 N -0.60 -13.18 2.21 -172.32 -0.38 -13.56 16 20 C -0.26 -6.73 10.03 -15.06 -0.15 -6.88 16 21 H 0.09 2.42 8.06 -52.49 -0.42 2.00 16 22 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 23 N -0.91 -26.60 13.97 55.49 0.78 -25.83 16 24 Si 0.88 21.16 24.35 -169.99 -4.14 17.02 16 25 H -0.29 -6.48 6.62 56.52 0.37 -6.10 16 26 H -0.30 -7.57 7.11 56.52 0.40 -7.16 16 27 H -0.27 -6.57 6.64 56.52 0.38 -6.19 16 28 C 0.14 2.76 2.62 -3.71 -0.01 2.75 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.14 1.87 8.14 -51.93 -0.42 1.44 16 33 H 0.11 1.05 8.02 -51.93 -0.42 0.64 16 34 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.41 6.57 6.20 -40.82 -0.25 6.31 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 1.40 5.98 -51.93 -0.31 1.09 16 42 H 0.05 0.77 6.87 -51.93 -0.36 0.41 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.07 1.04 6.34 -51.93 -0.33 0.71 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 49 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 50 H 0.02 0.50 7.07 -51.93 -0.37 0.14 16 51 H 0.07 1.51 3.41 -51.93 -0.18 1.33 16 LS Contribution 401.31 15.07 6.05 6.05 Total: -1.00 -31.18 401.31 -8.13 -39.31 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -8.15 Total: 7.39 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -2.68 Total: -5.96 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 0.51 Total: -55.66 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.29 Total: -8.13 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.14 Total: 17.02 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.18 -8.13 -39.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500508813.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.785 kcal (2) G-P(sol) polarization free energy of solvation -31.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds