Wall clock time and date at job start Wed Apr 1 2020 04:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30014 * 127.33494 * 2 1 4 4 O 1.20658 * 112.30385 * 179.86029 * 3 2 1 5 5 C 1.33489 * 113.15498 * 0.42997 * 4 3 2 6 6 C 1.50702 * 126.83187 * 179.71049 * 5 4 3 7 7 C 1.52998 * 117.49373 * 8.79296 * 6 5 4 8 8 C 1.52995 * 117.49915 * 300.13414 * 6 5 4 9 9 C 1.37365 * 106.34253 * 359.74529 * 5 4 3 10 10 C 1.47393 * 128.56418 * 180.02562 * 9 5 4 11 11 O 1.21617 * 120.00013 * 270.02399 * 10 9 5 12 12 N 1.34777 * 120.00274 * 90.03015 * 10 9 5 13 13 C 1.46496 * 120.00090 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47171 * 179.97438 * 13 12 10 15 15 C 1.53007 * 109.49686 * 60.06461 * 14 13 12 16 16 C 1.53044 * 109.50081 * 180.15754 * 14 13 12 17 17 C 1.53038 * 109.54073 * 181.31813 * 16 14 13 18 18 C 1.53193 * 109.31445 * 298.63675 * 17 16 14 19 19 N 1.46934 * 108.77425 * 54.63296 * 18 17 16 20 20 C 1.36935 * 120.62795 * 126.41682 * 19 18 17 21 21 H 1.07996 * 120.00087 * 332.54834 * 20 19 18 22 22 C 1.38806 * 120.00024 * 152.55527 * 20 19 18 23 23 N 1.31624 * 120.00452 * 159.35418 * 22 20 19 24 24 Si 1.86804 * 119.99915 * 339.35410 * 22 20 19 25 25 H 1.48504 * 109.47008 * 92.94387 * 24 22 20 26 26 H 1.48500 * 109.47381 * 212.94372 * 24 22 20 27 27 H 1.48500 * 109.46956 * 332.94412 * 24 22 20 28 28 C 1.46924 * 118.73660 * 306.39234 * 19 18 17 29 29 H 1.08995 * 109.46933 * 269.67776 * 1 2 3 30 30 H 1.09000 * 109.47172 * 29.68318 * 1 2 3 31 31 H 1.09006 * 109.46792 * 149.68497 * 1 2 3 32 32 H 1.08997 * 115.54921 * 154.45610 * 6 5 4 33 33 H 1.08997 * 117.50511 * 359.97438 * 7 6 5 34 34 H 1.09001 * 117.49842 * 145.02273 * 7 6 5 35 35 H 1.08999 * 117.50213 * 214.98144 * 8 6 5 36 36 H 1.09004 * 117.49899 * 359.96682 * 8 6 5 37 37 H 0.96997 * 120.00030 * 359.97438 * 12 10 9 38 38 H 1.08997 * 109.47152 * 299.99242 * 13 12 10 39 39 H 1.09006 * 109.47462 * 59.99508 * 13 12 10 40 40 H 1.08996 * 109.47372 * 59.99792 * 15 14 13 41 41 H 1.09001 * 109.47310 * 180.02562 * 15 14 13 42 42 H 1.09001 * 109.46782 * 299.99956 * 15 14 13 43 43 H 1.08998 * 109.46106 * 301.34139 * 16 14 13 44 44 H 1.09000 * 109.45600 * 61.29723 * 16 14 13 45 45 H 1.09000 * 109.50057 * 178.68458 * 17 16 14 46 46 H 1.09003 * 109.52674 * 58.60142 * 17 16 14 47 47 H 1.09001 * 109.58446 * 294.84939 * 18 17 16 48 48 H 1.08991 * 109.58826 * 174.41898 * 18 17 16 49 49 H 0.96997 * 119.99797 * 179.97438 * 23 22 20 50 50 H 1.08994 * 109.59063 * 293.81771 * 28 19 18 51 51 H 1.09002 * 109.58436 * 173.39165 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7208 0.0027 5 6 3.6495 -0.6006 -0.0042 6 6 4.9713 -1.3245 -0.0093 7 6 6.2352 -0.4884 0.2010 8 6 5.9168 -1.0603 -1.1827 9 6 2.3992 -1.1696 -0.0064 10 6 2.0402 -2.5991 -0.0131 11 8 1.8922 -3.1840 -1.0691 12 7 1.8759 -3.2581 1.1510 13 6 1.5196 -4.6791 1.1444 14 6 1.3956 -5.1805 2.5845 15 6 0.3069 -4.3869 3.3096 16 6 1.0273 -6.6660 2.5783 17 6 0.8708 -7.1606 4.0181 18 6 2.2021 -6.9956 4.7580 19 7 2.6360 -5.5964 4.6443 20 6 2.9449 -4.8688 5.7625 21 1 2.4825 -5.1096 6.7082 22 6 3.8523 -3.8216 5.6803 23 7 3.8574 -2.8812 6.6012 24 14 5.0664 -3.7468 4.2625 25 1 4.4947 -2.9271 3.1640 26 1 6.3354 -3.1329 4.7293 27 1 5.3340 -5.1209 3.7671 28 6 2.7328 -4.9932 3.3081 29 1 -0.3633 -0.0058 1.0276 30 1 -0.3633 0.8928 -0.5089 31 1 -0.3633 -0.8872 -0.5188 32 1 4.9579 -2.3306 0.4097 33 1 6.1109 0.5851 0.3426 34 1 7.0537 -0.9448 0.7578 35 1 6.5258 -1.8926 -1.5357 36 1 5.5826 -0.3634 -1.9513 37 1 1.9942 -2.7917 1.9932 38 1 0.5681 -4.8127 0.6297 39 1 2.2947 -5.2457 0.6282 40 1 -0.6445 -4.5214 2.7951 41 1 0.2192 -4.7441 4.3357 42 1 0.5707 -3.3293 3.3148 43 1 0.0883 -6.8051 2.0425 44 1 1.8153 -7.2334 2.0830 45 1 0.5857 -8.2126 4.0125 46 1 0.1000 -6.5774 4.5219 47 1 2.9519 -7.6482 4.3109 48 1 2.0704 -7.2530 5.8089 49 1 4.4917 -2.1497 6.5439 50 1 3.5259 -5.4824 2.7428 51 1 2.9512 -3.9294 3.4024 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500508813.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:52 Heat of formation + Delta-G solvation = 48.214590 kcal Electronic energy + Delta-G solvation = -32588.549840 eV Core-core repulsion = 28491.793801 eV Total energy + Delta-G solvation = -4096.756039 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -46.04910 -41.19725 -39.95150 -38.46790 -36.48506 -35.72633 -34.92813 -33.35625 -32.77522 -32.18164 -29.87020 -28.18202 -27.72033 -27.14053 -25.48922 -24.67141 -24.07828 -23.42868 -22.17406 -21.75264 -20.71361 -19.99219 -19.16836 -18.85277 -18.59195 -17.76408 -17.33955 -17.17610 -16.83162 -16.25916 -15.86606 -15.58262 -15.40244 -15.27490 -15.08851 -14.75413 -14.68440 -14.43103 -14.35791 -14.02047 -13.96756 -13.75647 -13.56579 -13.23942 -13.17289 -12.87763 -12.65045 -12.59159 -12.53584 -12.33827 -12.28092 -12.12161 -11.96292 -11.62696 -11.57291 -11.55619 -11.53794 -11.18314 -11.08897 -11.06049 -10.62664 -10.33972 -10.25854 -8.88032 -8.15164 -5.45256 0.06458 0.72750 1.17114 1.23202 1.38826 1.46659 1.55836 2.13465 2.39668 2.67237 2.97109 3.02334 3.05681 3.33195 3.48192 3.58226 3.73483 3.78062 3.85316 3.87373 3.88409 4.07332 4.28632 4.32461 4.36615 4.42389 4.46019 4.52500 4.57223 4.62242 4.63587 4.69437 4.72383 4.78290 4.78728 4.90758 4.92143 4.97560 5.01350 5.06026 5.08190 5.12968 5.16501 5.21581 5.32018 5.38435 5.44986 5.68771 5.89050 6.14802 6.22686 6.89599 6.94068 7.01792 7.64981 8.05835 9.04554 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010173 B = 0.004434 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.742638 B = 6312.658784 C = 7468.273975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.058 3.942 3 N -0.373 5.373 4 O 0.090 5.910 5 C 0.061 3.939 6 C -0.131 4.131 7 C -0.154 4.154 8 C -0.134 4.134 9 C -0.275 4.275 10 C 0.609 3.391 11 O -0.556 6.556 12 N -0.708 5.708 13 C 0.134 3.866 14 C -0.083 4.083 15 C -0.124 4.124 16 C -0.093 4.093 17 C -0.127 4.127 18 C 0.138 3.862 19 N -0.614 5.614 20 C -0.238 4.238 21 H 0.052 0.948 22 C -0.031 4.031 23 N -0.954 5.954 24 Si 0.936 3.064 25 H -0.268 1.268 26 H -0.315 1.315 27 H -0.269 1.269 28 C 0.137 3.863 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.128 0.872 33 H 0.111 0.889 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.108 0.892 37 H 0.404 0.596 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.034 0.966 43 H 0.086 0.914 44 H 0.066 0.934 45 H 0.086 0.914 46 H 0.059 0.941 47 H 0.030 0.970 48 H 0.052 0.948 49 H 0.259 0.741 50 H 0.023 0.977 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.564 -0.082 -15.978 16.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.104 4.104 3 N -0.082 5.082 4 O 0.032 5.968 5 C -0.003 4.003 6 C -0.150 4.150 7 C -0.191 4.191 8 C -0.170 4.170 9 C -0.282 4.282 10 C 0.394 3.606 11 O -0.435 6.435 12 N -0.359 5.359 13 C 0.011 3.989 14 C -0.085 4.085 15 C -0.181 4.181 16 C -0.131 4.131 17 C -0.166 4.166 18 C 0.013 3.987 19 N -0.338 5.338 20 C -0.368 4.368 21 H 0.070 0.930 22 C -0.226 4.226 23 N -0.601 5.601 24 Si 0.766 3.234 25 H -0.194 1.194 26 H -0.245 1.245 27 H -0.194 1.194 28 C 0.011 3.989 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.108 0.892 32 H 0.146 0.854 33 H 0.129 0.871 34 H 0.139 0.861 35 H 0.147 0.853 36 H 0.126 0.874 37 H 0.240 0.760 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.053 0.947 43 H 0.105 0.895 44 H 0.085 0.915 45 H 0.105 0.895 46 H 0.078 0.922 47 H 0.048 0.952 48 H 0.070 0.930 49 H 0.068 0.932 50 H 0.041 0.959 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.786 0.899 -16.640 17.089 hybrid contribution 0.916 -0.110 0.586 1.093 sum -2.870 0.789 -16.054 16.327 Atomic orbital electron populations 1.20399 0.82826 1.05231 1.05038 1.25248 0.99966 0.85734 0.99494 1.73582 0.89248 1.23732 1.21639 1.84465 1.21587 1.22359 1.68395 1.23876 0.96176 0.83406 0.96837 1.20678 0.84449 0.99571 1.10303 1.23259 0.95513 1.00421 0.99894 1.23257 0.98582 1.04164 0.91042 1.21914 0.93356 0.95469 1.17455 1.16797 0.76199 0.83924 0.83706 1.90776 1.52121 1.68890 1.31718 1.46177 1.69264 1.12309 1.08147 1.21562 1.01671 0.79099 0.96566 1.21231 0.96567 0.97914 0.92771 1.21686 0.97469 0.98241 1.00699 1.21393 1.02365 0.92181 0.97179 1.21941 0.97426 1.01521 0.95675 1.21173 0.94840 0.83645 0.98999 1.44400 1.78664 1.09276 1.01432 1.18823 1.18203 1.10376 0.89406 0.93013 1.25810 1.00109 0.97274 0.99428 1.69962 1.38935 1.12464 1.38718 0.86062 0.79228 0.77901 0.80189 1.19433 1.24477 1.19435 1.21373 0.95143 0.96573 0.85772 0.88242 0.88304 0.89220 0.85441 0.87077 0.86127 0.85329 0.87409 0.75993 0.89352 0.91298 0.90970 0.92829 0.94678 0.89544 0.91542 0.89516 0.92198 0.95171 0.92987 0.93186 0.95941 0.93364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.56 10.49 71.24 0.75 -0.81 16 2 C 0.06 1.61 7.59 45.16 0.34 1.96 16 3 N -0.37 -11.08 12.01 -44.77 -0.54 -11.62 16 4 O 0.09 2.61 10.86 77.02 0.84 3.45 16 5 C 0.06 1.73 7.00 25.48 0.18 1.91 16 6 C -0.13 -3.20 6.15 -11.54 -0.07 -3.27 16 7 C -0.15 -2.93 10.19 30.62 0.31 -2.62 16 8 C -0.13 -2.34 10.24 30.62 0.31 -2.03 16 9 C -0.27 -8.29 6.24 -18.75 -0.12 -8.41 16 10 C 0.61 19.00 7.63 86.65 0.66 19.66 16 11 O -0.56 -19.78 17.11 -4.08 -0.07 -19.85 16 12 N -0.71 -20.88 4.99 -466.41 -2.33 -23.21 16 13 C 0.13 3.58 4.57 86.38 0.39 3.97 16 14 C -0.08 -2.40 0.53 -52.10 -0.03 -2.43 16 15 C -0.12 -3.68 7.81 71.98 0.56 -3.11 16 16 C -0.09 -2.25 4.71 30.62 0.14 -2.10 16 17 C -0.13 -3.37 5.74 30.67 0.18 -3.20 16 18 C 0.14 4.86 6.52 86.36 0.56 5.43 16 19 N -0.61 -26.68 2.21 -699.11 -1.54 -28.23 16 20 C -0.24 -12.84 10.03 84.03 0.84 -12.00 16 21 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 22 C -0.03 -1.77 5.23 84.86 0.44 -1.33 16 23 N -0.95 -58.21 13.97 21.65 0.30 -57.91 16 24 Si 0.94 44.64 24.35 68.60 1.67 46.31 16 25 H -0.27 -11.67 6.62 99.48 0.66 -11.01 16 26 H -0.32 -15.58 7.11 99.48 0.71 -14.87 16 27 H -0.27 -12.56 6.64 99.48 0.66 -11.90 16 28 C 0.14 5.25 2.62 86.36 0.23 5.48 16 29 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 32 H 0.13 3.36 8.14 -2.39 -0.02 3.34 16 33 H 0.11 2.02 8.02 -2.39 -0.02 2.00 16 34 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.11 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.40 12.70 6.20 -92.71 -0.58 12.12 16 38 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 41 H 0.05 1.86 5.98 -2.39 -0.01 1.85 16 42 H 0.03 1.11 6.87 -2.39 -0.02 1.09 16 43 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.06 1.70 6.34 -2.39 -0.02 1.69 16 47 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.05 1.90 7.93 -2.39 -0.02 1.88 16 49 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 50 H 0.02 0.88 7.07 -2.39 -0.02 0.87 16 51 H 0.05 2.06 3.41 -2.39 -0.01 2.05 16 Total: -1.00 -69.55 401.31 4.30 -65.25 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 0.28 Total: 28.69 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: 5.69 Total: -2.89 kcal Atomic # 7 Polarization: -116.86 SS G_CDS: -4.11 Total: -120.96 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: 0.77 Total: -16.40 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.67 Total: 46.31 kcal Total: -69.55 4.30 -65.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500508813.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.467 kcal (2) G-P(sol) polarization free energy of solvation -69.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds