Wall clock time and date at job start Wed Apr 1 2020 04:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34866 * 119.09933 * 2 1 4 4 C 1.41671 * 119.33782 * 179.97438 * 3 2 1 5 5 O 1.22086 * 121.06482 * 179.97438 * 4 3 2 6 6 C 1.47099 * 117.86218 * 0.02562 * 4 3 2 7 7 C 1.47290 * 120.87876 * 179.97438 * 6 4 3 8 8 O 1.21616 * 119.99861 * 359.97438 * 7 6 4 9 9 N 1.34780 * 119.99851 * 179.97438 * 7 6 4 10 10 C 1.46496 * 120.00242 * 183.86504 * 9 7 6 11 11 C 1.52998 * 109.47125 * 299.50077 * 10 9 7 12 12 N 1.46494 * 109.47271 * 301.98561 * 11 10 9 13 13 C 1.36940 * 120.00244 * 185.24462 * 12 11 10 14 14 H 1.08000 * 119.99780 * 359.97438 * 13 12 11 15 15 C 1.38813 * 119.99931 * 180.02562 * 13 12 11 16 16 N 1.31615 * 120.00184 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99678 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47548 * 59.99401 * 17 15 13 19 19 H 1.48502 * 109.46953 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47082 * 299.99310 * 17 15 13 21 21 C 1.52994 * 109.47664 * 179.50006 * 10 9 7 22 22 C 1.53005 * 109.46622 * 300.00153 * 21 10 9 23 23 C 1.53001 * 109.47357 * 299.99527 * 22 21 10 24 24 C 1.52994 * 109.46869 * 60.00624 * 23 22 21 25 25 C 1.52998 * 109.46874 * 59.49699 * 10 9 7 26 26 C 1.37987 * 118.23795 * 359.97416 * 6 4 3 27 27 N 1.34344 * 120.37060 * 0.02753 * 26 6 4 28 28 C 1.46506 * 118.80292 * 179.97438 * 27 26 6 29 29 H 1.08997 * 109.46904 * 96.19282 * 1 2 3 30 30 H 1.08996 * 109.46783 * 216.19568 * 1 2 3 31 31 H 1.09001 * 109.46692 * 336.19025 * 1 2 3 32 32 H 1.07998 * 120.32957 * 359.72464 * 3 2 1 33 33 H 0.97004 * 119.99795 * 3.86667 * 9 7 6 34 34 H 1.09006 * 109.46907 * 61.98298 * 11 10 9 35 35 H 1.09004 * 109.47065 * 181.97665 * 11 10 9 36 36 H 0.96999 * 119.99727 * 5.23823 * 12 11 10 37 37 H 0.97002 * 120.00159 * 180.02562 * 16 15 13 38 38 H 1.08999 * 109.47299 * 59.99437 * 21 10 9 39 39 H 1.09000 * 109.47414 * 180.02562 * 21 10 9 40 40 H 1.09008 * 109.47015 * 179.97438 * 22 21 10 41 41 H 1.08996 * 109.47496 * 60.00192 * 22 21 10 42 42 H 1.09004 * 109.46959 * 300.00281 * 23 22 21 43 43 H 1.09001 * 109.46891 * 180.02562 * 23 22 21 44 44 H 1.08999 * 109.47299 * 180.02562 * 24 23 22 45 45 H 1.08992 * 109.47713 * 59.99719 * 24 23 22 46 46 H 1.09000 * 109.47303 * 180.02562 * 25 10 9 47 47 H 1.09000 * 109.47442 * 300.00237 * 25 10 9 48 48 H 1.08002 * 119.81102 * 180.02562 * 26 6 4 49 49 H 1.08999 * 109.47068 * 263.79038 * 28 27 26 50 50 H 1.08993 * 109.47359 * 23.79433 * 28 27 26 51 51 H 1.09000 * 109.47275 * 143.79460 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1630 1.1784 0.0000 4 6 3.5797 1.1843 0.0006 5 8 4.2053 2.2327 0.0001 6 6 4.2725 -0.1133 0.0005 7 6 5.7437 -0.1847 0.0005 8 8 6.4021 0.8379 0.0001 9 7 6.3602 -1.3832 0.0010 10 6 7.8209 -1.4556 0.0865 11 6 8.4384 -0.7335 -1.1127 12 7 7.9522 -1.3429 -2.3530 13 6 8.4525 -0.9320 -3.5597 14 1 9.2052 -0.1584 -3.5970 15 6 7.9915 -1.5092 -4.7350 16 7 7.0738 -2.4516 -4.6895 17 14 8.6735 -0.9482 -6.3811 18 1 10.1391 -1.1845 -6.4162 19 1 8.0226 -1.7148 -7.4737 20 1 8.4011 0.5004 -6.5620 21 6 8.2602 -2.9211 0.0809 22 6 7.6427 -3.6431 1.2801 23 6 8.1115 -2.9752 2.5744 24 6 7.6721 -1.5097 2.5801 25 6 8.2896 -0.7876 1.3807 26 6 3.5077 -1.2618 0.0005 27 7 2.1665 -1.1846 0.0000 28 6 1.3881 -2.4258 -0.0006 29 1 -0.3633 -0.1109 -1.0216 30 1 -0.3633 -0.8293 0.6069 31 1 -0.3633 0.9402 0.4149 32 1 1.6137 2.1083 -0.0045 33 1 5.8367 -2.1979 -0.0553 34 1 8.1541 0.3186 -1.0891 35 1 9.5242 -0.8175 -1.0677 36 1 7.2760 -2.0375 -2.3195 37 1 6.7519 -2.8551 -5.5108 38 1 7.9262 -3.3970 -0.8411 39 1 9.3470 -2.9749 0.1449 40 1 7.9553 -4.6874 1.2759 41 1 6.5559 -3.5894 1.2165 42 1 9.1983 -3.0291 2.6380 43 1 7.6719 -3.4900 3.4287 44 1 8.0065 -1.0337 3.5019 45 1 6.5854 -1.4559 2.5164 46 1 9.3765 -0.8410 1.4442 47 1 7.9767 0.2565 1.3847 48 1 3.9901 -2.2281 0.0009 49 1 1.1013 -2.6744 -1.0224 50 1 1.9914 -3.2333 0.4141 51 1 0.4923 -2.2932 0.6061 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506534040.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:46 Heat of formation + Delta-G solvation = -24.800949 kcal Electronic energy + Delta-G solvation = -32537.829187 eV Core-core repulsion = 28437.906957 eV Total energy + Delta-G solvation = -4099.922230 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.23647 -40.00741 -37.98061 -36.98608 -34.51142 -33.73773 -33.06634 -32.49061 -31.01037 -30.56992 -29.28494 -27.95906 -27.01255 -25.16372 -24.24431 -22.91062 -22.40820 -21.89395 -20.74768 -20.30884 -18.79161 -18.11334 -17.40674 -17.05382 -16.26163 -16.17269 -15.87197 -15.17169 -14.94917 -14.51078 -14.42054 -14.22207 -13.84985 -13.79945 -13.70573 -13.49978 -13.32675 -13.15466 -13.12724 -13.04751 -12.81966 -12.55376 -12.15262 -12.05879 -12.01970 -11.97687 -11.88637 -11.48507 -11.24192 -10.88811 -10.77649 -10.69083 -10.44585 -10.11766 -9.97859 -9.81812 -9.55692 -9.48133 -9.35835 -8.88003 -8.58844 -8.33941 -7.86118 -6.71680 -5.65240 -2.89204 0.94318 1.32715 2.27153 3.39665 3.52920 3.55705 3.58925 3.61076 3.95305 4.16790 4.25886 4.42678 4.58471 4.67830 4.71214 4.90989 4.95214 4.96782 5.00070 5.02506 5.06529 5.11150 5.35026 5.40821 5.44953 5.46053 5.63534 5.71014 5.72572 5.73856 5.79691 5.80699 5.86592 5.95918 6.19796 6.21428 6.32672 6.36095 6.41690 6.47066 6.52105 6.53719 6.62916 6.72057 6.74311 6.81853 7.12618 7.34530 7.84038 8.12201 8.36114 8.55602 8.95656 9.66882 10.26626 10.62752 11.58608 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007687 B = 0.004453 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3641.467970 B = 6286.995692 C = 8130.778983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.153 3.847 3 C -0.271 4.271 4 C 0.407 3.593 5 O -0.479 6.479 6 C -0.284 4.284 7 C 0.578 3.422 8 O -0.502 6.502 9 N -0.714 5.714 10 C 0.182 3.818 11 C 0.137 3.863 12 N -0.724 5.724 13 C -0.223 4.223 14 H 0.068 0.932 15 C -0.018 4.018 16 N -0.941 5.941 17 Si 0.904 3.096 18 H -0.287 1.287 19 H -0.293 1.293 20 H -0.287 1.287 21 C -0.119 4.119 22 C -0.117 4.117 23 C -0.118 4.118 24 C -0.112 4.112 25 C -0.129 4.129 26 C 0.167 3.833 27 N -0.472 5.472 28 C 0.050 3.950 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.149 0.851 33 H 0.385 0.615 34 H 0.047 0.953 35 H 0.023 0.977 36 H 0.380 0.620 37 H 0.251 0.749 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.066 0.934 47 H 0.084 0.916 48 H 0.164 0.836 49 H 0.082 0.918 50 H 0.092 0.908 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.284 -6.633 17.071 23.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.047 3.953 3 C -0.296 4.296 4 C 0.293 3.707 5 O -0.359 6.359 6 C -0.295 4.295 7 C 0.365 3.635 8 O -0.376 6.376 9 N -0.368 5.368 10 C 0.096 3.904 11 C 0.009 3.991 12 N -0.368 5.368 13 C -0.355 4.355 14 H 0.086 0.914 15 C -0.213 4.213 16 N -0.591 5.591 17 Si 0.736 3.264 18 H -0.214 1.214 19 H -0.219 1.219 20 H -0.214 1.214 21 C -0.157 4.157 22 C -0.155 4.155 23 C -0.155 4.155 24 C -0.150 4.150 25 C -0.168 4.168 26 C 0.037 3.963 27 N -0.160 5.160 28 C -0.092 4.092 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.167 0.833 33 H 0.220 0.780 34 H 0.065 0.935 35 H 0.041 0.959 36 H 0.214 0.786 37 H 0.061 0.939 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.085 0.915 47 H 0.102 0.898 48 H 0.181 0.819 49 H 0.101 0.899 50 H 0.111 0.889 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.466 -5.370 16.955 22.926 hybrid contribution -0.221 -0.623 -1.229 1.396 sum -14.687 -5.993 15.726 22.336 Atomic orbital electron populations 1.21165 0.88290 1.04766 1.04042 1.20211 0.94687 0.85085 0.95288 1.22268 0.96477 0.97050 1.13767 1.18153 0.88152 0.88032 0.76410 1.90818 1.69938 1.33214 1.41948 1.22688 0.94962 0.94878 1.16995 1.17268 0.85647 0.83772 0.76829 1.90781 1.65311 1.34066 1.47405 1.45833 1.07236 1.07282 1.76415 1.20497 0.79089 0.95448 0.95353 1.21160 0.95471 0.97271 0.85168 1.42187 1.48705 1.45637 1.00269 1.19236 1.16550 1.15396 0.84309 0.91431 1.24628 0.99735 0.99498 0.97428 1.69631 1.33279 1.29740 1.26453 0.86286 0.78177 0.77917 0.84015 1.21430 1.21889 1.21409 1.21773 1.01461 0.93914 0.98510 1.21547 1.00030 0.98975 0.94938 1.21545 1.00906 0.95941 0.97115 1.21441 1.00631 0.95030 0.97864 1.21893 1.00226 1.01429 0.93227 1.22178 0.82018 0.99960 0.92148 1.42473 1.05293 1.07009 1.61212 1.22514 0.97636 0.84505 1.04529 0.89389 0.90285 0.89045 0.83288 0.78043 0.93510 0.95915 0.78597 0.93899 0.90130 0.90624 0.92119 0.92647 0.92107 0.92746 0.92630 0.92334 0.91489 0.89778 0.81857 0.89910 0.88909 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.56 9.34 36.01 0.34 -0.23 16 2 C 0.15 1.40 6.64 -82.13 -0.55 0.86 16 3 C -0.27 -3.57 9.57 -39.47 -0.38 -3.95 16 4 C 0.41 7.58 6.96 -34.68 -0.24 7.34 16 5 O -0.48 -11.32 16.41 -15.18 -0.25 -11.57 16 6 C -0.28 -4.78 6.05 -102.72 -0.62 -5.40 16 7 C 0.58 11.37 7.18 -12.58 -0.09 11.28 16 8 O -0.50 -12.20 11.82 -14.75 -0.17 -12.37 16 9 N -0.71 -11.74 3.50 -48.72 -0.17 -11.91 16 10 C 0.18 3.14 0.32 -131.83 -0.04 3.09 16 11 C 0.14 3.12 4.93 -4.05 -0.02 3.10 16 12 N -0.72 -19.09 5.12 -59.91 -0.31 -19.40 16 13 C -0.22 -6.62 9.99 -15.06 -0.15 -6.77 16 14 H 0.07 2.00 7.83 -52.49 -0.41 1.58 16 15 C -0.02 -0.54 5.50 -17.43 -0.10 -0.64 16 16 N -0.94 -28.73 13.06 55.49 0.72 -28.00 16 17 Si 0.90 23.58 29.55 -169.99 -5.02 18.55 16 18 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 19 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 20 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 21 C -0.12 -1.78 4.63 -26.73 -0.12 -1.90 16 22 C -0.12 -1.33 5.75 -26.73 -0.15 -1.49 16 23 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 24 C -0.11 -1.42 5.77 -26.73 -0.15 -1.58 16 25 C -0.13 -2.04 4.51 -26.73 -0.12 -2.16 16 26 C 0.17 1.86 9.79 -16.54 -0.16 1.70 16 27 N -0.47 -3.96 2.97 -119.74 -0.36 -4.32 16 28 C 0.05 0.17 9.98 59.85 0.60 0.77 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.18 6.02 -51.93 -0.31 -0.14 16 31 H 0.09 0.35 7.97 -51.93 -0.41 -0.06 16 32 H 0.15 1.72 8.01 -52.49 -0.42 1.30 16 33 H 0.39 5.16 5.42 -40.82 -0.22 4.94 16 34 H 0.05 1.22 6.13 -51.93 -0.32 0.90 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.38 10.10 6.52 -40.82 -0.27 9.83 16 37 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.08 1.39 7.10 -51.93 -0.37 1.02 16 39 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 41 H 0.05 0.57 6.87 -51.93 -0.36 0.21 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.76 7.60 -51.93 -0.39 0.37 16 46 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 47 H 0.08 1.57 6.26 -51.93 -0.33 1.25 16 48 H 0.16 1.31 6.29 -52.49 -0.33 0.98 16 49 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 50 H 0.09 0.18 7.85 -51.93 -0.41 -0.23 16 51 H 0.09 0.12 5.95 -51.93 -0.31 -0.19 16 LS Contribution 393.99 15.07 5.94 5.94 Total: -1.00 -41.41 393.99 -9.54 -50.95 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -7.80 Total: 9.55 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -2.12 Total: 2.59 kcal Atomic # 7 Polarization: -63.52 SS G_CDS: -0.11 Total: -63.63 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.42 Total: -23.94 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -5.02 Total: 18.55 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -41.41 -9.54 -50.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506534040.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.145 kcal (2) G-P(sol) polarization free energy of solvation -41.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds