Wall clock time and date at job start Wed Apr 1 2020 04:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34866 * 119.09933 * 2 1 4 4 C 1.41671 * 119.33782 * 179.97438 * 3 2 1 5 5 O 1.22086 * 121.06482 * 179.97438 * 4 3 2 6 6 C 1.47099 * 117.86218 * 0.02562 * 4 3 2 7 7 C 1.47290 * 120.87876 * 179.97438 * 6 4 3 8 8 O 1.21616 * 119.99861 * 359.97438 * 7 6 4 9 9 N 1.34780 * 119.99851 * 179.97438 * 7 6 4 10 10 C 1.46496 * 120.00242 * 183.86504 * 9 7 6 11 11 C 1.52998 * 109.47125 * 299.50077 * 10 9 7 12 12 N 1.46494 * 109.47271 * 301.98561 * 11 10 9 13 13 C 1.36940 * 120.00244 * 185.24462 * 12 11 10 14 14 H 1.08000 * 119.99780 * 359.97438 * 13 12 11 15 15 C 1.38813 * 119.99931 * 180.02562 * 13 12 11 16 16 N 1.31615 * 120.00184 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99678 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47548 * 59.99401 * 17 15 13 19 19 H 1.48502 * 109.46953 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47082 * 299.99310 * 17 15 13 21 21 C 1.52994 * 109.47664 * 179.50006 * 10 9 7 22 22 C 1.53005 * 109.46622 * 300.00153 * 21 10 9 23 23 C 1.53001 * 109.47357 * 299.99527 * 22 21 10 24 24 C 1.52994 * 109.46869 * 60.00624 * 23 22 21 25 25 C 1.52998 * 109.46874 * 59.49699 * 10 9 7 26 26 C 1.37987 * 118.23795 * 359.97416 * 6 4 3 27 27 N 1.34344 * 120.37060 * 0.02753 * 26 6 4 28 28 C 1.46506 * 118.80292 * 179.97438 * 27 26 6 29 29 H 1.08997 * 109.46904 * 96.19282 * 1 2 3 30 30 H 1.08996 * 109.46783 * 216.19568 * 1 2 3 31 31 H 1.09001 * 109.46692 * 336.19025 * 1 2 3 32 32 H 1.07998 * 120.32957 * 359.72464 * 3 2 1 33 33 H 0.97004 * 119.99795 * 3.86667 * 9 7 6 34 34 H 1.09006 * 109.46907 * 61.98298 * 11 10 9 35 35 H 1.09004 * 109.47065 * 181.97665 * 11 10 9 36 36 H 0.96999 * 119.99727 * 5.23823 * 12 11 10 37 37 H 0.97002 * 120.00159 * 180.02562 * 16 15 13 38 38 H 1.08999 * 109.47299 * 59.99437 * 21 10 9 39 39 H 1.09000 * 109.47414 * 180.02562 * 21 10 9 40 40 H 1.09008 * 109.47015 * 179.97438 * 22 21 10 41 41 H 1.08996 * 109.47496 * 60.00192 * 22 21 10 42 42 H 1.09004 * 109.46959 * 300.00281 * 23 22 21 43 43 H 1.09001 * 109.46891 * 180.02562 * 23 22 21 44 44 H 1.08999 * 109.47299 * 180.02562 * 24 23 22 45 45 H 1.08992 * 109.47713 * 59.99719 * 24 23 22 46 46 H 1.09000 * 109.47303 * 180.02562 * 25 10 9 47 47 H 1.09000 * 109.47442 * 300.00237 * 25 10 9 48 48 H 1.08002 * 119.81102 * 180.02562 * 26 6 4 49 49 H 1.08999 * 109.47068 * 263.79038 * 28 27 26 50 50 H 1.08993 * 109.47359 * 23.79433 * 28 27 26 51 51 H 1.09000 * 109.47275 * 143.79460 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1630 1.1784 0.0000 4 6 3.5797 1.1843 0.0006 5 8 4.2053 2.2327 0.0001 6 6 4.2725 -0.1133 0.0005 7 6 5.7437 -0.1847 0.0005 8 8 6.4021 0.8379 0.0001 9 7 6.3602 -1.3832 0.0010 10 6 7.8209 -1.4556 0.0865 11 6 8.4384 -0.7335 -1.1127 12 7 7.9522 -1.3429 -2.3530 13 6 8.4525 -0.9320 -3.5597 14 1 9.2052 -0.1584 -3.5970 15 6 7.9915 -1.5092 -4.7350 16 7 7.0738 -2.4516 -4.6895 17 14 8.6735 -0.9482 -6.3811 18 1 10.1391 -1.1845 -6.4162 19 1 8.0226 -1.7148 -7.4737 20 1 8.4011 0.5004 -6.5620 21 6 8.2602 -2.9211 0.0809 22 6 7.6427 -3.6431 1.2801 23 6 8.1115 -2.9752 2.5744 24 6 7.6721 -1.5097 2.5801 25 6 8.2896 -0.7876 1.3807 26 6 3.5077 -1.2618 0.0005 27 7 2.1665 -1.1846 0.0000 28 6 1.3881 -2.4258 -0.0006 29 1 -0.3633 -0.1109 -1.0216 30 1 -0.3633 -0.8293 0.6069 31 1 -0.3633 0.9402 0.4149 32 1 1.6137 2.1083 -0.0045 33 1 5.8367 -2.1979 -0.0553 34 1 8.1541 0.3186 -1.0891 35 1 9.5242 -0.8175 -1.0677 36 1 7.2760 -2.0375 -2.3195 37 1 6.7519 -2.8551 -5.5108 38 1 7.9262 -3.3970 -0.8411 39 1 9.3470 -2.9749 0.1449 40 1 7.9553 -4.6874 1.2759 41 1 6.5559 -3.5894 1.2165 42 1 9.1983 -3.0291 2.6380 43 1 7.6719 -3.4900 3.4287 44 1 8.0065 -1.0337 3.5019 45 1 6.5854 -1.4559 2.5164 46 1 9.3765 -0.8410 1.4442 47 1 7.9767 0.2565 1.3847 48 1 3.9901 -2.2281 0.0009 49 1 1.1013 -2.6744 -1.0224 50 1 1.9914 -3.2333 0.4141 51 1 0.4923 -2.2932 0.6061 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506534040.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:45 Heat of formation + Delta-G solvation = -54.440304 kcal Electronic energy + Delta-G solvation = -32539.114446 eV Core-core repulsion = 28437.906957 eV Total energy + Delta-G solvation = -4101.207489 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.25704 -41.31559 -39.23985 -38.36366 -36.39453 -34.92550 -34.24307 -33.71845 -32.77374 -31.70581 -30.81082 -28.81431 -27.64662 -27.03135 -25.24108 -24.70275 -23.64424 -23.14243 -21.91658 -21.53565 -20.12355 -19.26187 -19.23704 -18.37706 -17.26155 -16.98428 -16.91426 -16.78031 -16.46392 -16.06142 -15.77192 -15.59724 -15.17973 -14.95300 -14.89952 -14.74005 -14.67431 -14.42034 -14.18665 -13.83270 -13.81673 -13.70709 -13.41143 -13.30965 -13.13651 -13.02462 -12.84490 -12.74138 -12.64656 -12.62713 -12.49471 -12.15572 -11.98323 -11.88145 -11.43030 -11.18422 -11.08663 -11.01136 -10.65766 -10.43721 -10.16503 -9.83899 -9.00924 -8.93039 -7.96654 -5.21312 -0.14793 0.34984 1.41114 1.45321 1.50197 1.50875 2.03532 2.27498 2.54168 2.87401 3.24023 3.35812 3.61460 3.64797 3.73953 3.81561 3.88776 3.90139 4.12684 4.25272 4.26804 4.28560 4.43481 4.48008 4.48757 4.56268 4.62488 4.65266 4.72965 4.74542 4.81539 4.84236 4.86151 4.87204 4.88859 5.14742 5.15105 5.20427 5.22101 5.27385 5.32665 5.36947 5.41209 5.44504 5.53535 5.55887 5.73655 5.80595 5.82090 6.27309 6.79193 7.13487 7.34310 7.55580 8.08038 8.40288 9.26458 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007687 B = 0.004453 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3641.467970 B = 6286.995692 C = 8130.778983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.187 3.813 3 C -0.309 4.309 4 C 0.379 3.621 5 O -0.570 6.570 6 C -0.349 4.349 7 C 0.571 3.429 8 O -0.566 6.566 9 N -0.699 5.699 10 C 0.189 3.811 11 C 0.139 3.861 12 N -0.724 5.724 13 C -0.248 4.248 14 H 0.057 0.943 15 C -0.065 4.065 16 N -0.960 5.960 17 Si 0.967 3.033 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.292 1.292 21 C -0.110 4.110 22 C -0.110 4.110 23 C -0.110 4.110 24 C -0.105 4.105 25 C -0.125 4.125 26 C 0.214 3.786 27 N -0.456 5.456 28 C 0.032 3.968 29 H 0.106 0.894 30 H 0.117 0.883 31 H 0.099 0.901 32 H 0.154 0.846 33 H 0.402 0.598 34 H 0.004 0.996 35 H 0.019 0.981 36 H 0.379 0.621 37 H 0.253 0.747 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.065 0.935 45 H 0.056 0.944 46 H 0.071 0.929 47 H 0.044 0.956 48 H 0.205 0.795 49 H 0.098 0.902 50 H 0.119 0.881 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.601 -11.523 18.131 28.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.079 3.921 3 C -0.333 4.333 4 C 0.273 3.727 5 O -0.459 6.459 6 C -0.360 4.360 7 C 0.360 3.640 8 O -0.445 6.445 9 N -0.352 5.352 10 C 0.103 3.897 11 C 0.011 3.989 12 N -0.368 5.368 13 C -0.381 4.381 14 H 0.075 0.925 15 C -0.258 4.258 16 N -0.611 5.611 17 Si 0.796 3.204 18 H -0.202 1.202 19 H -0.209 1.209 20 H -0.219 1.219 21 C -0.148 4.148 22 C -0.147 4.147 23 C -0.148 4.148 24 C -0.142 4.142 25 C -0.164 4.164 26 C 0.079 3.921 27 N -0.139 5.139 28 C -0.107 4.107 29 H 0.125 0.875 30 H 0.135 0.865 31 H 0.118 0.882 32 H 0.171 0.829 33 H 0.239 0.761 34 H 0.022 0.978 35 H 0.037 0.963 36 H 0.213 0.787 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.102 0.898 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.090 0.910 47 H 0.062 0.938 48 H 0.222 0.778 49 H 0.116 0.884 50 H 0.138 0.862 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -17.855 -10.361 18.035 27.412 hybrid contribution 0.626 0.771 -1.580 1.866 sum -17.229 -9.590 16.455 25.682 Atomic orbital electron populations 1.21397 0.83656 1.06991 1.05948 1.20874 0.97162 0.83887 0.90180 1.22133 0.93973 0.99546 1.17613 1.19008 0.90494 0.87889 0.75331 1.90753 1.71836 1.35620 1.47714 1.22373 0.93889 0.96361 1.23335 1.17837 0.87044 0.83536 0.75601 1.90748 1.66950 1.36292 1.50474 1.45626 1.06892 1.07186 1.75509 1.20355 0.79401 0.96704 0.93261 1.21167 0.95508 0.95661 0.86587 1.42185 1.48561 1.45479 1.00527 1.19509 1.16902 1.15574 0.86071 0.92542 1.25357 1.00230 0.99770 1.00420 1.69741 1.33865 1.30233 1.27216 0.85324 0.78101 0.77028 0.79974 1.20246 1.20949 1.21904 1.21689 1.01602 0.91823 0.99724 1.21543 1.00819 0.99486 0.92878 1.21519 1.01357 0.94037 0.97869 1.21401 1.00182 0.96459 0.96205 1.21816 1.00702 0.99585 0.94276 1.22568 0.83128 0.99422 0.86947 1.43157 1.04811 1.09051 1.56870 1.23131 0.98694 0.82220 1.06616 0.87530 0.86451 0.88225 0.82855 0.76052 0.97840 0.96330 0.78746 0.93864 0.92264 0.90869 0.89847 0.90917 0.91796 0.89775 0.91670 0.92560 0.91008 0.93761 0.77826 0.88365 0.86244 0.85612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.46 9.34 71.24 0.67 0.21 16 2 C 0.19 2.88 6.64 41.21 0.27 3.15 16 3 C -0.31 -8.50 9.57 22.34 0.21 -8.29 16 4 C 0.38 15.67 6.96 25.45 0.18 15.85 16 5 O -0.57 -31.00 16.41 13.54 0.22 -30.78 16 6 C -0.35 -12.43 6.05 -18.63 -0.11 -12.54 16 7 C 0.57 24.41 7.18 86.62 0.62 25.03 16 8 O -0.57 -31.15 11.82 15.06 0.18 -30.97 16 9 N -0.70 -23.72 3.50 -426.30 -1.49 -25.21 16 10 C 0.19 6.83 0.32 3.60 0.00 6.83 16 11 C 0.14 6.82 4.93 86.38 0.43 7.24 16 12 N -0.72 -40.16 5.12 -343.45 -1.76 -41.91 16 13 C -0.25 -15.36 9.99 84.03 0.84 -14.52 16 14 H 0.06 3.53 7.83 -2.91 -0.02 3.50 16 15 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 16 N -0.96 -58.85 13.06 21.65 0.28 -58.57 16 17 Si 0.97 49.16 29.55 68.60 2.03 51.19 16 18 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 19 H -0.28 -13.96 7.11 99.48 0.71 -13.26 16 20 H -0.29 -15.01 7.11 99.48 0.71 -14.30 16 21 C -0.11 -3.24 4.63 30.59 0.14 -3.09 16 22 C -0.11 -2.11 5.75 30.60 0.18 -1.93 16 23 C -0.11 -2.02 5.92 30.59 0.18 -1.84 16 24 C -0.10 -2.56 5.77 30.60 0.18 -2.39 16 25 C -0.12 -4.19 4.51 30.60 0.14 -4.05 16 26 C 0.21 4.28 9.79 84.25 0.83 5.10 16 27 N -0.46 -5.68 2.97 -532.76 -1.58 -7.26 16 28 C 0.03 0.00 9.98 127.77 1.27 1.27 16 29 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.12 -0.37 6.02 -2.39 -0.01 -0.38 16 31 H 0.10 0.35 7.97 -2.39 -0.02 0.33 16 32 H 0.15 3.85 8.01 -2.91 -0.02 3.83 16 33 H 0.40 10.27 5.42 -92.71 -0.50 9.76 16 34 H 0.00 0.22 6.13 -2.38 -0.01 0.20 16 35 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.38 20.78 6.52 -92.71 -0.60 20.18 16 37 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 38 H 0.06 2.01 7.10 -2.39 -0.02 1.99 16 39 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.07 1.16 6.87 -2.39 -0.02 1.14 16 42 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 43 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.06 1.40 7.60 -2.39 -0.02 1.39 16 46 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.04 1.85 6.26 -2.39 -0.01 1.84 16 48 H 0.21 2.34 6.29 -2.91 -0.02 2.32 16 49 H 0.10 -0.09 8.14 -2.39 -0.02 -0.11 16 50 H 0.12 -0.47 7.85 -2.39 -0.02 -0.49 16 51 H 0.13 -0.72 5.95 -2.39 -0.01 -0.74 16 Total: -1.00 -106.13 393.99 4.22 -101.91 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: -0.14 Total: 29.04 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 6.49 Total: 12.57 kcal Atomic # 7 Polarization: -128.41 SS G_CDS: -4.55 Total: -132.96 kcal Atomic # 8 Polarization: -62.15 SS G_CDS: 0.40 Total: -61.75 kcal Atomic # 14 Polarization: 49.16 SS G_CDS: 2.03 Total: 51.19 kcal Total: -106.13 4.22 -101.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506534040.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.466 kcal (2) G-P(sol) polarization free energy of solvation -106.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds