Wall clock time and date at job start Wed Apr 1 2020 05:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 110.78221 * 2 1 4 4 C 1.54322 * 110.71785 * 236.76355 * 2 1 3 5 5 N 1.47029 * 107.27205 * 219.44232 * 4 2 1 6 6 C 1.36931 * 125.65108 * 178.99347 * 5 4 2 7 7 H 1.08008 * 120.00033 * 349.95086 * 6 5 4 8 8 C 1.38810 * 120.00262 * 169.94827 * 6 5 4 9 9 N 1.31621 * 119.99908 * 350.42395 * 8 6 5 10 10 Si 1.86797 * 120.00260 * 170.41888 * 8 6 5 11 11 H 1.48499 * 109.47278 * 94.14065 * 10 8 6 12 12 H 1.48504 * 109.47293 * 214.14507 * 10 8 6 13 13 H 1.48505 * 109.47124 * 334.14259 * 10 8 6 14 14 C 1.47468 * 108.72107 * 358.97657 * 5 4 2 15 15 C 1.54913 * 104.81245 * 24.06855 * 14 5 4 16 16 H 1.08999 * 111.00609 * 204.95661 * 15 14 5 17 17 N 1.46506 * 111.00556 * 81.13430 * 15 14 5 18 18 C 1.34774 * 119.99516 * 89.57979 * 17 15 14 19 19 O 1.21281 * 120.00020 * 0.02562 * 18 17 15 20 20 C 1.50703 * 119.99941 * 180.02562 * 18 17 15 21 21 C 1.53001 * 109.47225 * 180.02562 * 20 18 17 22 22 C 1.53000 * 109.46788 * 179.97438 * 21 20 18 23 23 O 1.42897 * 109.46679 * 179.97438 * 22 21 20 24 24 C 1.35918 * 117.00011 * 179.97438 * 23 22 21 25 25 C 1.39140 * 120.47485 * 180.02562 * 24 23 22 26 26 C 1.38535 * 118.37486 * 180.02562 * 25 24 23 27 27 C 1.38257 * 119.21993 * 359.97438 * 26 25 24 28 28 N 1.31844 * 120.88601 * 0.02562 * 27 26 25 29 29 C 1.31841 * 121.78381 * 359.69778 * 28 27 26 30 30 H 1.09005 * 109.46980 * 296.75988 * 1 2 3 31 31 H 1.08998 * 109.47336 * 56.76119 * 1 2 3 32 32 H 1.09000 * 109.47198 * 176.76451 * 1 2 3 33 33 H 1.09001 * 109.47635 * 183.23909 * 3 2 1 34 34 H 1.09008 * 109.47028 * 303.24135 * 3 2 1 35 35 H 1.09001 * 109.47473 * 63.23595 * 3 2 1 36 36 H 1.09000 * 109.88326 * 338.85567 * 4 2 1 37 37 H 1.09004 * 109.88385 * 99.87176 * 4 2 1 38 38 H 0.97000 * 120.00295 * 179.97438 * 9 8 6 39 39 H 1.08994 * 110.34838 * 265.25475 * 14 5 4 40 40 H 1.09000 * 110.40752 * 142.91303 * 14 5 4 41 41 H 0.96991 * 120.00139 * 269.58528 * 17 15 14 42 42 H 1.09005 * 109.46523 * 300.00501 * 20 18 17 43 43 H 1.08998 * 109.47170 * 59.99946 * 20 18 17 44 44 H 1.08999 * 109.47011 * 300.00313 * 21 20 18 45 45 H 1.09002 * 109.47092 * 60.00023 * 21 20 18 46 46 H 1.08998 * 109.47364 * 299.99585 * 22 21 20 47 47 H 1.08993 * 109.46997 * 60.00367 * 22 21 20 48 48 H 1.08001 * 120.81303 * 359.97438 * 25 24 23 49 49 H 1.07997 * 120.38912 * 180.02562 * 26 25 24 50 50 H 1.07991 * 119.55303 * 179.97438 * 27 26 25 51 51 H 1.07997 * 119.66559 * 180.29397 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4304 0.0000 4 6 2.0759 -0.7911 -1.2073 5 7 3.2445 -1.5507 -0.7391 6 6 4.0044 -2.3967 -1.5020 7 1 3.6726 -2.6772 -2.4908 8 6 5.2013 -2.8936 -1.0046 9 7 5.7001 -2.4109 0.1137 10 14 6.1039 -4.2473 -1.9222 11 1 7.1178 -3.6433 -2.8235 12 1 6.7783 -5.1416 -0.9472 13 1 5.1331 -5.0332 -2.7255 14 6 3.4632 -1.2507 0.6881 15 6 2.0790 -0.7955 1.2138 16 1 2.1850 -0.1518 2.0870 17 7 1.2265 -1.9484 1.5150 18 6 1.2502 -2.5010 2.7439 19 8 1.9768 -2.0437 3.6006 20 6 0.3738 -3.6873 3.0537 21 6 0.5903 -4.1158 4.5064 22 6 -0.2999 -5.3197 4.8210 23 8 -0.0973 -5.7203 6.1776 24 6 -0.8183 -6.7837 6.6212 25 6 -0.6780 -7.2347 7.9300 26 6 -1.4338 -8.3225 8.3361 27 6 -2.2962 -8.9192 7.4351 28 7 -2.4054 -8.4669 6.2016 29 6 -1.7084 -7.4314 5.7773 30 1 -0.3633 0.4627 0.9176 31 1 -0.3634 0.5633 -0.8595 32 1 -0.3633 -1.0260 -0.0580 33 1 3.1610 1.4062 -0.0581 34 1 1.6750 1.9700 -0.8596 35 1 1.7691 1.9344 0.9176 36 1 1.3129 -1.4758 -1.5775 37 1 2.3714 -0.1024 -1.9989 38 1 6.5363 -2.7584 0.4615 39 1 4.1935 -0.4492 0.7992 40 1 3.7952 -2.1437 1.2176 41 1 0.6453 -2.3138 0.8299 42 1 -0.6714 -3.4147 2.9074 43 1 0.6306 -4.5121 2.3890 44 1 1.6355 -4.3881 4.6530 45 1 0.3332 -3.2908 5.1708 46 1 -1.3450 -5.0470 4.6746 47 1 -0.0432 -6.1448 4.1567 48 1 0.0040 -6.7493 8.6124 49 1 -1.3509 -8.6993 9.3448 50 1 -2.8875 -9.7677 7.7458 51 1 -1.8282 -7.0866 4.7609 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506752094.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:41 Heat of formation + Delta-G solvation = -22.830616 kcal Electronic energy + Delta-G solvation = -30237.985770 eV Core-core repulsion = 26138.148980 eV Total energy + Delta-G solvation = -4099.836790 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.89421 -39.80218 -38.56866 -37.95504 -34.01363 -33.81639 -33.03260 -32.57432 -30.75096 -30.55435 -28.55683 -27.47190 -26.52795 -25.63802 -24.26372 -23.55355 -23.08544 -21.80909 -20.48705 -19.78553 -18.80216 -18.42639 -17.24840 -16.90026 -16.71947 -16.68836 -16.40486 -15.82651 -15.27576 -14.79826 -14.60812 -14.25497 -14.06549 -13.86765 -13.84705 -13.58310 -13.31921 -13.23292 -13.04054 -12.68190 -12.58563 -12.26252 -12.16558 -11.94612 -11.77759 -11.69564 -11.49157 -11.35715 -11.27257 -10.89645 -10.86871 -10.79271 -10.42231 -10.21900 -10.05907 -10.00959 -9.91844 -9.78295 -9.72325 -9.44844 -8.77888 -8.60171 -8.42246 -6.79442 -5.74173 -3.07687 0.76597 0.95494 2.70467 3.03003 3.38179 3.43777 3.46076 3.46525 3.63652 4.15427 4.32311 4.48083 4.50405 4.64226 4.67035 4.74819 4.83677 4.94579 4.98188 5.13712 5.17955 5.21197 5.22947 5.26071 5.31754 5.49198 5.53322 5.61411 5.63177 5.74311 5.76866 5.85747 5.93799 5.99981 6.08770 6.10715 6.16443 6.21120 6.22799 6.38567 6.49408 6.57954 6.69313 6.73179 6.94080 6.97328 7.51980 7.55602 7.60935 7.78841 7.97180 8.26058 8.65956 9.18133 9.80816 10.47865 11.37954 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011109 B = 0.002190 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.975918 B =12780.576528 C =14334.823722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.087 4.087 3 C -0.129 4.129 4 C 0.143 3.857 5 N -0.600 5.600 6 C -0.231 4.231 7 H 0.075 0.925 8 C -0.005 4.005 9 N -0.914 5.914 10 Si 0.908 3.092 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.169 3.831 15 C 0.122 3.878 16 H 0.087 0.913 17 N -0.704 5.704 18 C 0.513 3.487 19 O -0.544 6.544 20 C -0.137 4.137 21 C -0.102 4.102 22 C 0.056 3.944 23 O -0.305 6.305 24 C 0.086 3.914 25 C -0.112 4.112 26 C -0.132 4.132 27 C 0.054 3.946 28 N -0.451 5.451 29 C 0.015 3.985 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.021 0.979 37 H 0.024 0.976 38 H 0.253 0.747 39 H 0.034 0.966 40 H 0.073 0.927 41 H 0.397 0.603 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.143 0.857 49 H 0.141 0.859 50 H 0.157 0.843 51 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.602 -4.883 11.426 21.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.088 4.088 3 C -0.187 4.187 4 C 0.017 3.983 5 N -0.326 5.326 6 C -0.360 4.360 7 H 0.093 0.907 8 C -0.202 4.202 9 N -0.560 5.560 10 Si 0.738 3.262 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.043 3.957 15 C 0.017 3.983 16 H 0.105 0.895 17 N -0.354 5.354 18 C 0.298 3.702 19 O -0.421 6.421 20 C -0.178 4.178 21 C -0.140 4.140 22 C -0.019 4.019 23 O -0.217 6.217 24 C 0.037 3.963 25 C -0.139 4.139 26 C -0.152 4.152 27 C -0.104 4.104 28 N -0.160 5.160 29 C -0.143 4.143 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.039 0.961 37 H 0.042 0.958 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.092 0.908 41 H 0.231 0.769 42 H 0.110 0.890 43 H 0.115 0.885 44 H 0.104 0.896 45 H 0.101 0.899 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.161 0.839 49 H 0.159 0.841 50 H 0.174 0.826 51 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -17.281 -4.928 11.559 21.367 hybrid contribution 0.846 -0.550 -0.534 1.141 sum -16.435 -5.477 11.026 20.534 Atomic orbital electron populations 1.21710 0.94623 1.01155 1.01276 1.21827 0.94814 0.95798 0.96340 1.21693 1.02064 0.94055 1.00846 1.21404 0.90414 0.92853 0.93612 1.44452 1.30993 1.50490 1.06668 1.18960 0.99800 1.18867 0.98355 0.90749 1.24822 0.96909 1.00507 0.98002 1.69951 1.20599 1.43531 1.21950 0.86178 0.79655 0.81739 0.78591 1.21632 1.21656 1.20681 1.21765 0.89333 1.00024 0.84531 1.22543 0.93105 0.86368 0.96314 0.89486 1.45830 1.44137 1.32975 1.12431 1.20298 0.83121 0.84359 0.82405 1.90706 1.41324 1.63172 1.46915 1.21507 1.00702 0.97966 0.97594 1.21212 1.01087 0.96215 0.95469 1.22979 1.00459 0.98144 0.80292 1.86111 1.61164 1.44082 1.30367 1.20120 0.92712 0.88953 0.94466 1.21005 1.01347 0.97639 0.93860 1.22032 0.96210 0.95545 1.01382 1.22664 0.98376 1.00289 0.89056 1.67524 1.21147 1.10570 1.16770 1.22977 0.95952 0.94831 1.00583 0.92866 0.92721 0.92944 0.91625 0.92706 0.93097 0.96147 0.95849 0.93651 0.94802 0.90838 0.76878 0.88984 0.88533 0.89647 0.89949 0.91617 0.91451 0.83911 0.84087 0.82582 0.82397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.60 8.07 37.16 0.30 -1.30 16 2 C -0.09 -1.38 0.80 -152.68 -0.12 -1.50 16 3 C -0.13 -1.92 8.41 37.16 0.31 -1.61 16 4 C 0.14 2.79 6.41 -3.06 -0.02 2.77 16 5 N -0.60 -14.66 3.40 -170.03 -0.58 -15.24 16 6 C -0.23 -6.31 10.24 -15.06 -0.15 -6.46 16 7 H 0.07 1.97 7.85 -52.48 -0.41 1.56 16 8 C -0.01 -0.15 5.40 -17.43 -0.09 -0.24 16 9 N -0.91 -27.03 10.68 55.49 0.59 -26.43 16 10 Si 0.91 22.02 29.56 -169.99 -5.03 17.00 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 14 C 0.17 4.06 4.81 -2.50 -0.01 4.05 16 15 C 0.12 2.25 2.61 -65.77 -0.17 2.08 16 16 H 0.09 1.66 7.53 -51.93 -0.39 1.27 16 17 N -0.70 -11.24 4.62 -51.72 -0.24 -11.48 16 18 C 0.51 8.24 7.83 -10.99 -0.09 8.16 16 19 O -0.54 -11.00 15.67 5.56 0.09 -10.91 16 20 C -0.14 -1.50 5.70 -27.88 -0.16 -1.66 16 21 C -0.10 -1.15 4.87 -26.73 -0.13 -1.28 16 22 C 0.06 0.51 4.75 37.16 0.18 0.69 16 23 O -0.31 -3.40 10.15 -19.48 -0.20 -3.60 16 24 C 0.09 0.89 6.71 -39.07 -0.26 0.62 16 25 C -0.11 -0.99 10.13 -39.14 -0.40 -1.39 16 26 C -0.13 -0.95 10.11 -39.46 -0.40 -1.35 16 27 C 0.05 0.45 11.18 -17.54 -0.20 0.25 16 28 N -0.45 -4.82 10.35 -13.13 -0.14 -4.96 16 29 C 0.01 0.15 10.22 -17.37 -0.18 -0.03 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.60 6.42 -51.93 -0.33 0.27 16 33 H 0.06 1.13 7.58 -51.93 -0.39 0.74 16 34 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.02 0.38 7.76 -51.93 -0.40 -0.02 16 37 H 0.02 0.47 7.84 -51.93 -0.41 0.06 16 38 H 0.25 7.33 8.31 -40.82 -0.34 7.00 16 39 H 0.03 0.90 7.73 -51.93 -0.40 0.50 16 40 H 0.07 2.05 6.94 -51.93 -0.36 1.69 16 41 H 0.40 5.51 7.03 -40.82 -0.29 5.22 16 42 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 45 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 46 H 0.07 0.48 7.67 -51.93 -0.40 0.08 16 47 H 0.07 0.55 7.69 -51.93 -0.40 0.15 16 48 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 49 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 50 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 51 H 0.16 1.30 6.32 -52.49 -0.33 0.97 16 LS Contribution 409.90 15.07 6.18 6.18 Total: -1.00 -34.25 409.90 -9.21 -43.46 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -8.30 Total: 4.21 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -1.59 Total: 1.78 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -0.36 Total: -58.11 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.11 Total: -14.51 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.25 -9.21 -43.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506752094.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.626 kcal (2) G-P(sol) polarization free energy of solvation -34.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds