Wall clock time and date at job start Wed Apr 1 2020 05:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 110.78221 * 2 1 4 4 C 1.54322 * 110.71785 * 236.76355 * 2 1 3 5 5 N 1.47029 * 107.27205 * 219.44232 * 4 2 1 6 6 C 1.36931 * 125.65108 * 178.99347 * 5 4 2 7 7 H 1.08008 * 120.00033 * 349.95086 * 6 5 4 8 8 C 1.38810 * 120.00262 * 169.94827 * 6 5 4 9 9 N 1.31621 * 119.99908 * 350.42395 * 8 6 5 10 10 Si 1.86797 * 120.00260 * 170.41888 * 8 6 5 11 11 H 1.48499 * 109.47278 * 94.14065 * 10 8 6 12 12 H 1.48504 * 109.47293 * 214.14507 * 10 8 6 13 13 H 1.48505 * 109.47124 * 334.14259 * 10 8 6 14 14 C 1.47468 * 108.72107 * 358.97657 * 5 4 2 15 15 C 1.54913 * 104.81245 * 24.06855 * 14 5 4 16 16 H 1.08999 * 111.00609 * 204.95661 * 15 14 5 17 17 N 1.46506 * 111.00556 * 81.13430 * 15 14 5 18 18 C 1.34774 * 119.99516 * 89.57979 * 17 15 14 19 19 O 1.21281 * 120.00020 * 0.02562 * 18 17 15 20 20 C 1.50703 * 119.99941 * 180.02562 * 18 17 15 21 21 C 1.53001 * 109.47225 * 180.02562 * 20 18 17 22 22 C 1.53000 * 109.46788 * 179.97438 * 21 20 18 23 23 O 1.42897 * 109.46679 * 179.97438 * 22 21 20 24 24 C 1.35918 * 117.00011 * 179.97438 * 23 22 21 25 25 C 1.39140 * 120.47485 * 180.02562 * 24 23 22 26 26 C 1.38535 * 118.37486 * 180.02562 * 25 24 23 27 27 C 1.38257 * 119.21993 * 359.97438 * 26 25 24 28 28 N 1.31844 * 120.88601 * 0.02562 * 27 26 25 29 29 C 1.31841 * 121.78381 * 359.69778 * 28 27 26 30 30 H 1.09005 * 109.46980 * 296.75988 * 1 2 3 31 31 H 1.08998 * 109.47336 * 56.76119 * 1 2 3 32 32 H 1.09000 * 109.47198 * 176.76451 * 1 2 3 33 33 H 1.09001 * 109.47635 * 183.23909 * 3 2 1 34 34 H 1.09008 * 109.47028 * 303.24135 * 3 2 1 35 35 H 1.09001 * 109.47473 * 63.23595 * 3 2 1 36 36 H 1.09000 * 109.88326 * 338.85567 * 4 2 1 37 37 H 1.09004 * 109.88385 * 99.87176 * 4 2 1 38 38 H 0.97000 * 120.00295 * 179.97438 * 9 8 6 39 39 H 1.08994 * 110.34838 * 265.25475 * 14 5 4 40 40 H 1.09000 * 110.40752 * 142.91303 * 14 5 4 41 41 H 0.96991 * 120.00139 * 269.58528 * 17 15 14 42 42 H 1.09005 * 109.46523 * 300.00501 * 20 18 17 43 43 H 1.08998 * 109.47170 * 59.99946 * 20 18 17 44 44 H 1.08999 * 109.47011 * 300.00313 * 21 20 18 45 45 H 1.09002 * 109.47092 * 60.00023 * 21 20 18 46 46 H 1.08998 * 109.47364 * 299.99585 * 22 21 20 47 47 H 1.08993 * 109.46997 * 60.00367 * 22 21 20 48 48 H 1.08001 * 120.81303 * 359.97438 * 25 24 23 49 49 H 1.07997 * 120.38912 * 180.02562 * 26 25 24 50 50 H 1.07991 * 119.55303 * 179.97438 * 27 26 25 51 51 H 1.07997 * 119.66559 * 180.29397 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4304 0.0000 4 6 2.0759 -0.7911 -1.2073 5 7 3.2445 -1.5507 -0.7391 6 6 4.0044 -2.3967 -1.5020 7 1 3.6726 -2.6772 -2.4908 8 6 5.2013 -2.8936 -1.0046 9 7 5.7001 -2.4109 0.1137 10 14 6.1039 -4.2473 -1.9222 11 1 7.1178 -3.6433 -2.8235 12 1 6.7783 -5.1416 -0.9472 13 1 5.1331 -5.0332 -2.7255 14 6 3.4632 -1.2507 0.6881 15 6 2.0790 -0.7955 1.2138 16 1 2.1850 -0.1518 2.0870 17 7 1.2265 -1.9484 1.5150 18 6 1.2502 -2.5010 2.7439 19 8 1.9768 -2.0437 3.6006 20 6 0.3738 -3.6873 3.0537 21 6 0.5903 -4.1158 4.5064 22 6 -0.2999 -5.3197 4.8210 23 8 -0.0973 -5.7203 6.1776 24 6 -0.8183 -6.7837 6.6212 25 6 -0.6780 -7.2347 7.9300 26 6 -1.4338 -8.3225 8.3361 27 6 -2.2962 -8.9192 7.4351 28 7 -2.4054 -8.4669 6.2016 29 6 -1.7084 -7.4314 5.7773 30 1 -0.3633 0.4627 0.9176 31 1 -0.3634 0.5633 -0.8595 32 1 -0.3633 -1.0260 -0.0580 33 1 3.1610 1.4062 -0.0581 34 1 1.6750 1.9700 -0.8596 35 1 1.7691 1.9344 0.9176 36 1 1.3129 -1.4758 -1.5775 37 1 2.3714 -0.1024 -1.9989 38 1 6.5363 -2.7584 0.4615 39 1 4.1935 -0.4492 0.7992 40 1 3.7952 -2.1437 1.2176 41 1 0.6453 -2.3138 0.8299 42 1 -0.6714 -3.4147 2.9074 43 1 0.6306 -4.5121 2.3890 44 1 1.6355 -4.3881 4.6530 45 1 0.3332 -3.2908 5.1708 46 1 -1.3450 -5.0470 4.6746 47 1 -0.0432 -6.1448 4.1567 48 1 0.0040 -6.7493 8.6124 49 1 -1.3509 -8.6993 9.3448 50 1 -2.8875 -9.7677 7.7458 51 1 -1.8282 -7.0866 4.7609 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506752094.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:40 Heat of formation + Delta-G solvation = -45.837860 kcal Electronic energy + Delta-G solvation = -30238.983439 eV Core-core repulsion = 26138.148980 eV Total energy + Delta-G solvation = -4100.834459 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.57998 -41.19866 -39.59290 -39.11314 -35.65447 -34.93253 -34.44681 -33.23931 -32.63974 -31.24825 -30.03946 -28.53156 -27.77017 -27.34443 -25.28037 -24.69139 -24.00135 -22.82132 -22.05905 -21.18335 -20.07632 -19.26584 -18.66865 -18.16538 -17.56593 -17.49274 -17.44373 -17.28000 -16.64454 -16.21653 -15.69013 -15.46246 -15.29596 -15.19339 -14.95520 -14.65581 -14.50808 -14.24112 -13.98609 -13.89441 -13.68242 -13.59486 -13.34087 -13.19344 -13.06907 -12.90721 -12.78760 -12.64091 -12.58054 -12.51104 -12.32896 -12.08958 -11.81739 -11.75336 -11.71017 -11.52668 -11.33865 -10.85117 -10.68598 -10.67719 -10.44844 -9.92543 -9.46571 -8.83050 -7.87400 -5.22432 0.13932 0.28753 1.43236 1.44488 1.54045 1.74027 1.94305 2.45666 2.48309 2.81821 3.31956 3.54483 3.56994 3.64178 3.68236 3.75310 3.89682 3.92888 3.97466 4.04108 4.09317 4.10239 4.29254 4.35228 4.42097 4.43067 4.52275 4.53940 4.63827 4.65756 4.79509 4.85088 4.90521 4.94479 5.00314 5.04507 5.06011 5.12630 5.14437 5.19885 5.21894 5.32924 5.36587 5.47583 5.55671 5.58899 5.70180 5.75335 6.19283 6.24573 6.69109 6.96126 7.06290 7.39365 7.77033 8.43384 9.23433 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011109 B = 0.002190 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.975918 B =12780.576528 C =14334.823722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.073 4.073 3 C -0.128 4.128 4 C 0.138 3.862 5 N -0.616 5.616 6 C -0.235 4.235 7 H 0.084 0.916 8 C -0.068 4.068 9 N -0.951 5.951 10 Si 0.974 3.026 11 H -0.288 1.288 12 H -0.300 1.300 13 H -0.263 1.263 14 C 0.182 3.818 15 C 0.136 3.864 16 H 0.078 0.922 17 N -0.696 5.696 18 C 0.504 3.496 19 O -0.593 6.593 20 C -0.125 4.125 21 C -0.097 4.097 22 C 0.059 3.941 23 O -0.327 6.327 24 C 0.066 3.934 25 C -0.125 4.125 26 C -0.123 4.123 27 C 0.047 3.953 28 N -0.478 5.478 29 C 0.003 3.997 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.029 0.971 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.041 0.959 37 H 0.021 0.979 38 H 0.244 0.756 39 H -0.008 1.008 40 H 0.024 0.976 41 H 0.411 0.589 42 H 0.137 0.863 43 H 0.112 0.888 44 H 0.052 0.948 45 H 0.070 0.930 46 H 0.092 0.908 47 H 0.078 0.922 48 H 0.152 0.848 49 H 0.175 0.825 50 H 0.183 0.817 51 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.233 -5.865 10.762 24.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.074 4.074 3 C -0.185 4.185 4 C 0.013 3.987 5 N -0.342 5.342 6 C -0.365 4.365 7 H 0.102 0.898 8 C -0.261 4.261 9 N -0.599 5.599 10 Si 0.803 3.197 11 H -0.215 1.215 12 H -0.227 1.227 13 H -0.188 1.188 14 C 0.055 3.945 15 C 0.029 3.971 16 H 0.096 0.904 17 N -0.347 5.347 18 C 0.292 3.708 19 O -0.474 6.474 20 C -0.164 4.164 21 C -0.135 4.135 22 C -0.015 4.015 23 O -0.239 6.239 24 C 0.019 3.981 25 C -0.151 4.151 26 C -0.142 4.142 27 C -0.111 4.111 28 N -0.188 5.188 29 C -0.154 4.154 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.048 0.952 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.039 0.961 38 H 0.053 0.947 39 H 0.009 0.991 40 H 0.043 0.957 41 H 0.248 0.752 42 H 0.155 0.845 43 H 0.131 0.869 44 H 0.071 0.929 45 H 0.089 0.911 46 H 0.110 0.890 47 H 0.097 0.903 48 H 0.169 0.831 49 H 0.192 0.808 50 H 0.200 0.800 51 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -20.977 -5.912 10.844 24.343 hybrid contribution 1.990 -0.231 -0.291 2.024 sum -18.987 -6.142 10.553 22.575 Atomic orbital electron populations 1.21681 0.90662 1.02661 1.03002 1.21813 0.97708 0.95153 0.92729 1.21701 0.99846 0.94032 1.02966 1.21656 0.88971 0.93045 0.95001 1.44692 1.31942 1.50788 1.06798 1.19399 0.99809 1.18531 0.98712 0.89814 1.25668 0.98261 1.03112 0.99069 1.70198 1.20710 1.45126 1.23909 0.85133 0.78500 0.78923 0.77193 1.21527 1.22656 1.18751 1.21391 0.91949 0.96425 0.84710 1.22136 0.90737 0.87317 0.96897 0.90376 1.45736 1.43555 1.32373 1.13030 1.21299 0.82839 0.85023 0.81627 1.90689 1.43504 1.64821 1.48390 1.21513 1.01851 0.95756 0.97293 1.21100 0.99727 0.96939 0.95766 1.22976 1.01207 0.97377 0.79939 1.86067 1.61891 1.44722 1.31261 1.20320 0.93319 0.89196 0.95285 1.21347 1.01824 0.98264 0.93704 1.22389 0.94779 0.94383 1.02686 1.23212 0.98506 1.00788 0.88553 1.67549 1.21977 1.11167 1.18125 1.23170 0.96015 0.94948 1.01239 0.91507 0.90612 0.91647 0.95165 0.90244 0.91255 0.94104 0.96139 0.94713 0.99059 0.95716 0.75202 0.84513 0.86946 0.92944 0.91119 0.88991 0.90336 0.83056 0.80758 0.80002 0.81170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.50 8.07 71.98 0.58 -1.92 16 2 C -0.07 -2.20 0.80 -51.00 -0.04 -2.24 16 3 C -0.13 -3.66 8.41 71.98 0.61 -3.05 16 4 C 0.14 5.18 6.41 86.73 0.56 5.74 16 5 N -0.62 -30.71 3.40 -691.86 -2.35 -33.06 16 6 C -0.24 -13.00 10.24 84.03 0.86 -12.14 16 7 H 0.08 4.37 7.85 -2.91 -0.02 4.35 16 8 C -0.07 -3.92 5.40 84.86 0.46 -3.46 16 9 N -0.95 -59.46 10.68 21.65 0.23 -59.23 16 10 Si 0.97 46.31 29.56 68.60 2.03 48.34 16 11 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 12 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 13 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 14 C 0.18 9.23 4.81 86.85 0.42 9.65 16 15 C 0.14 5.06 2.61 46.38 0.12 5.18 16 16 H 0.08 3.08 7.53 -2.39 -0.02 3.06 16 17 N -0.70 -21.58 4.62 -435.94 -2.01 -23.60 16 18 C 0.50 16.13 7.83 87.66 0.69 16.82 16 19 O -0.59 -25.09 15.67 -3.03 -0.05 -25.14 16 20 C -0.12 -2.49 5.70 29.85 0.17 -2.32 16 21 C -0.10 -2.18 4.87 30.59 0.15 -2.03 16 22 C 0.06 1.01 4.75 71.98 0.34 1.35 16 23 O -0.33 -7.20 10.15 -92.63 -0.94 -8.14 16 24 C 0.07 1.33 6.71 22.60 0.15 1.48 16 25 C -0.12 -2.08 10.13 22.56 0.23 -1.85 16 26 C -0.12 -1.51 10.11 22.35 0.23 -1.29 16 27 C 0.05 0.69 11.18 84.70 0.95 1.63 16 28 N -0.48 -9.58 10.35 -195.45 -2.02 -11.61 16 29 C 0.00 0.07 10.22 84.80 0.87 0.93 16 30 H 0.07 1.24 8.14 -2.38 -0.02 1.23 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 1.18 6.42 -2.39 -0.02 1.17 16 33 H 0.03 1.06 7.58 -2.39 -0.02 1.04 16 34 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.04 1.40 7.76 -2.39 -0.02 1.38 16 37 H 0.02 0.80 7.84 -2.38 -0.02 0.78 16 38 H 0.24 15.00 8.31 -92.71 -0.77 14.23 16 39 H -0.01 -0.49 7.73 -2.39 -0.02 -0.51 16 40 H 0.02 1.47 6.94 -2.39 -0.02 1.45 16 41 H 0.41 10.31 7.03 -92.71 -0.65 9.65 16 42 H 0.14 1.57 8.14 -2.38 -0.02 1.55 16 43 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.05 1.50 8.10 -2.39 -0.02 1.48 16 45 H 0.07 1.73 8.10 -2.39 -0.02 1.71 16 46 H 0.09 1.08 7.67 -2.39 -0.02 1.07 16 47 H 0.08 1.15 7.69 -2.39 -0.02 1.13 16 48 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 49 H 0.18 0.87 8.06 -2.91 -0.02 0.84 16 50 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 51 H 0.17 2.54 6.32 -2.91 -0.02 2.52 16 Total: -1.00 -81.49 409.90 2.48 -79.01 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.27 Total: 20.93 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 7.32 Total: 12.49 kcal Atomic # 7 Polarization: -121.34 SS G_CDS: -6.16 Total: -127.50 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.99 Total: -33.28 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -81.49 2.48 -79.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506752094.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.174 kcal (2) G-P(sol) polarization free energy of solvation -81.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds