Wall clock time and date at job start Wed Apr 1 2020 04:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41383 * 126.79705 * 2 1 4 4 C 1.35452 * 103.98337 * 180.09152 * 3 2 1 5 5 C 1.50697 * 126.77545 * 179.90897 * 4 3 2 6 6 C 1.50699 * 115.55268 * 355.27330 * 5 4 3 7 7 O 1.21286 * 119.99864 * 241.15958 * 6 5 4 8 8 N 1.34773 * 120.00060 * 61.15539 * 6 5 4 9 9 C 1.46925 * 120.63239 * 7.77805 * 8 6 5 10 10 C 1.53190 * 108.77422 * 126.41374 * 9 8 6 11 11 C 1.53042 * 109.31246 * 54.63811 * 10 9 8 12 12 H 1.09000 * 109.45966 * 58.64156 * 11 10 9 13 13 C 1.53004 * 109.45922 * 178.61739 * 11 10 9 14 14 C 1.53068 * 109.65956 * 298.69760 * 11 10 9 15 15 C 1.46935 * 120.62877 * 187.80577 * 8 6 5 16 16 H 1.09001 * 109.58287 * 113.65654 * 15 8 6 17 17 C 1.52998 * 109.58563 * 353.37327 * 15 8 6 18 18 N 1.46498 * 109.47083 * 70.17092 * 17 15 8 19 19 C 1.36935 * 119.99777 * 172.93024 * 18 17 15 20 20 H 1.08001 * 120.00169 * 359.72215 * 19 18 17 21 21 C 1.38813 * 119.99926 * 179.97438 * 19 18 17 22 22 N 1.31620 * 119.99774 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00070 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47043 * 90.00373 * 23 21 19 25 25 H 1.48501 * 109.47154 * 210.00482 * 23 21 19 26 26 H 1.48506 * 109.47154 * 330.00293 * 23 21 19 27 27 C 1.53005 * 117.51543 * 140.97208 * 5 4 3 28 28 C 1.53001 * 117.49753 * 209.59924 * 5 4 3 29 29 O 1.34037 * 106.44608 * 359.64915 * 4 3 2 30 30 N 1.20921 * 111.56758 * 0.23575 * 29 4 3 31 31 H 1.08998 * 109.47548 * 270.28630 * 1 2 3 32 32 H 1.09003 * 109.47788 * 30.29160 * 1 2 3 33 33 H 1.09008 * 109.46948 * 150.29324 * 1 2 3 34 34 H 1.08004 * 128.00657 * 0.02562 * 3 2 1 35 35 H 1.08998 * 109.59175 * 246.19983 * 9 8 6 36 36 H 1.09001 * 109.58471 * 6.48899 * 9 8 6 37 37 H 1.09000 * 109.49962 * 174.59470 * 10 9 8 38 38 H 1.09004 * 109.49996 * 294.65456 * 10 9 8 39 39 H 1.08997 * 109.47297 * 59.99995 * 13 11 10 40 40 H 1.08999 * 109.46927 * 180.02562 * 13 11 10 41 41 H 1.09001 * 109.46734 * 299.99662 * 13 11 10 42 42 H 1.08997 * 109.39623 * 301.28069 * 14 11 10 43 43 H 1.09001 * 109.62788 * 181.16915 * 14 11 10 44 44 H 1.08991 * 109.47029 * 310.16605 * 17 15 8 45 45 H 1.08996 * 109.46550 * 190.16703 * 17 15 8 46 46 H 0.96999 * 120.00084 * 352.92478 * 18 17 15 47 47 H 0.97007 * 119.99768 * 179.97438 * 22 21 19 48 48 H 1.09004 * 117.49359 * 214.96799 * 27 5 4 49 49 H 1.08996 * 117.50038 * 359.97438 * 27 5 4 50 50 H 1.08998 * 117.50176 * 359.97438 * 28 5 4 51 51 H 1.09001 * 117.49763 * 144.99911 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6069 -0.0021 5 6 4.9021 1.3698 -0.0049 6 6 4.7766 2.8673 -0.1175 7 8 5.2672 3.4476 -1.0628 8 7 4.1191 3.5617 0.8322 9 6 3.6674 2.9016 2.0646 10 6 4.2001 3.6860 3.2678 11 6 3.7730 5.1505 3.1465 12 1 2.6856 5.2090 3.1001 13 6 4.2741 5.9301 4.3640 14 6 4.3679 5.7567 1.8730 15 6 3.8397 4.9933 0.6544 16 1 2.7644 5.1473 0.5646 17 6 4.5377 5.4989 -0.6098 18 7 3.8759 4.9381 -1.7904 19 6 4.2339 5.3625 -3.0421 20 1 5.0008 6.1139 -3.1589 21 6 3.6072 4.8308 -4.1609 22 7 2.6687 3.9190 -4.0183 23 14 4.0950 5.4102 -5.8684 24 1 5.1944 4.5563 -6.3856 25 1 2.9243 5.3140 -6.7769 26 1 4.5540 6.8209 -5.8001 27 6 6.0469 0.8189 0.8476 28 6 6.1074 0.7093 -0.6772 29 8 3.4538 -0.7251 0.0047 30 7 2.2869 -1.0422 0.0058 31 1 -0.3634 0.0051 1.0276 32 1 -0.3635 0.8873 -0.5183 33 1 -0.3633 -0.8927 -0.5093 34 1 2.0708 2.1744 0.0004 35 1 2.5779 2.8854 2.0924 36 1 4.0489 1.8809 2.0932 37 1 3.7937 3.2633 4.1866 38 1 5.2882 3.6244 3.2894 39 1 5.3615 5.8713 4.4107 40 1 3.9696 6.9732 4.2780 41 1 3.8476 5.5011 5.2707 42 1 5.4545 5.6784 1.9083 43 1 4.0805 6.8054 1.7979 44 1 5.5823 5.1883 -0.5969 45 1 4.4824 6.5869 -0.6448 46 1 3.1843 4.2661 -1.6854 47 1 2.2305 3.5477 -4.8001 48 1 6.7093 1.5398 1.3270 49 1 5.8600 -0.0952 1.4111 50 1 5.9604 -0.2771 -1.1171 51 1 6.8095 1.3580 -1.2010 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565970899.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:09 Heat of formation + Delta-G solvation = 80.482601 kcal Electronic energy + Delta-G solvation = -33396.419220 eV Core-core repulsion = 29301.062428 eV Total energy + Delta-G solvation = -4095.356793 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.96548 -41.78749 -39.09229 -37.82910 -36.13299 -35.79902 -34.76060 -33.67236 -32.46544 -31.51321 -29.63478 -29.30177 -27.14595 -25.96571 -24.50794 -24.32833 -24.13189 -23.56342 -22.73280 -21.48251 -20.80580 -19.73698 -19.23570 -18.63877 -18.46074 -17.43988 -16.88107 -16.70988 -16.24248 -15.87572 -15.71092 -15.47046 -15.34882 -14.95274 -14.65675 -14.52264 -14.35659 -14.25247 -14.20384 -13.92498 -13.90458 -13.65367 -13.34345 -13.14774 -12.83070 -12.82744 -12.69838 -12.57395 -12.53928 -12.27869 -12.24735 -12.12303 -12.03184 -11.84873 -11.74458 -11.64451 -11.26878 -11.16346 -10.95901 -10.91865 -10.15103 -9.90253 -9.48228 -8.66370 -7.84693 -5.04041 0.34676 1.19899 1.41942 1.44571 1.49055 1.52746 2.01233 2.15700 2.60584 2.79503 3.17692 3.23327 3.44936 3.50345 3.72698 3.77824 3.82545 3.88441 3.93200 4.10713 4.13942 4.26476 4.33366 4.35937 4.47759 4.52403 4.57357 4.60363 4.63075 4.67418 4.70149 4.82337 4.83599 4.85448 4.88632 4.91836 4.95239 4.99632 5.05751 5.10248 5.16042 5.16424 5.21842 5.26185 5.38023 5.46276 5.53374 5.60229 5.83897 6.36039 6.57534 7.20540 7.41703 7.46781 8.23194 8.45592 9.39284 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.007423 B = 0.005464 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3771.228252 B = 5123.651540 C = 7153.845344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.022 3.978 3 C -0.226 4.226 4 C 0.021 3.979 5 C -0.104 4.104 6 C 0.529 3.471 7 O -0.495 6.495 8 N -0.600 5.600 9 C 0.108 3.892 10 C -0.120 4.120 11 C -0.087 4.087 12 H 0.072 0.928 13 C -0.140 4.140 14 C -0.111 4.111 15 C 0.149 3.851 16 H 0.062 0.938 17 C 0.158 3.842 18 N -0.707 5.707 19 C -0.211 4.211 20 H 0.062 0.938 21 C -0.081 4.081 22 N -0.970 5.970 23 Si 0.962 3.038 24 H -0.297 1.297 25 H -0.296 1.296 26 H -0.271 1.271 27 C -0.106 4.106 28 C -0.142 4.142 29 O 0.091 5.909 30 N -0.388 5.388 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.161 0.839 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.030 0.970 45 H 0.013 0.987 46 H 0.367 0.633 47 H 0.243 0.757 48 H 0.123 0.877 49 H 0.133 0.867 50 H 0.113 0.887 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.464 -4.858 22.355 22.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.136 4.136 3 C -0.247 4.247 4 C -0.042 4.042 5 C -0.109 4.109 6 C 0.314 3.686 7 O -0.367 6.367 8 N -0.336 5.336 9 C -0.014 4.014 10 C -0.158 4.158 11 C -0.106 4.106 12 H 0.091 0.909 13 C -0.197 4.197 14 C -0.150 4.150 15 C 0.045 3.955 16 H 0.080 0.920 17 C 0.032 3.968 18 N -0.348 5.348 19 C -0.344 4.344 20 H 0.080 0.920 21 C -0.272 4.272 22 N -0.623 5.623 23 Si 0.793 3.207 24 H -0.225 1.225 25 H -0.223 1.223 26 H -0.196 1.196 27 C -0.143 4.143 28 C -0.180 4.180 29 O 0.029 5.971 30 N -0.097 5.097 31 H 0.123 0.877 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.178 0.822 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.115 0.885 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.047 0.953 45 H 0.031 0.969 46 H 0.198 0.802 47 H 0.052 0.948 48 H 0.141 0.859 49 H 0.151 0.849 50 H 0.132 0.868 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.634 -5.715 21.725 22.523 hybrid contribution -0.295 0.862 -1.847 2.059 sum 1.340 -4.853 19.878 20.506 Atomic orbital electron populations 1.20313 0.83725 1.04314 1.04852 1.24030 1.00471 0.88049 1.01046 1.22382 0.91359 1.01118 1.09858 1.22970 0.95931 0.83399 1.01916 1.19486 0.86394 0.90953 1.14030 1.19235 0.80565 0.86594 0.82182 1.91068 1.45108 1.68549 1.31982 1.47820 1.57390 1.09114 1.19278 1.21930 0.99541 0.96976 0.82973 1.21955 1.01677 0.94714 0.97424 1.21094 1.00412 0.94970 0.94110 0.90915 1.21758 1.01238 0.99871 0.96815 1.21909 1.00848 0.99350 0.92852 1.21397 0.98691 0.80028 0.95335 0.92042 1.21019 0.96416 0.93932 0.85454 1.42286 1.43664 1.47757 1.01053 1.19461 1.14113 1.15379 0.85420 0.91968 1.25319 1.00462 1.00743 1.00726 1.69813 1.30145 1.33882 1.28423 0.85273 0.76413 0.77930 0.81057 1.22501 1.22283 1.19573 1.23362 0.94492 1.03433 0.93052 1.23144 0.95944 1.01850 0.97045 1.84714 1.21836 1.22032 1.68567 1.73773 0.89362 1.24347 1.22174 0.87669 0.89679 0.90102 0.82168 0.91498 0.89482 0.88460 0.91313 0.92663 0.92567 0.91382 0.91778 0.90241 0.95252 0.96886 0.80159 0.94846 0.85928 0.84858 0.86849 0.88322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.64 10.47 71.24 0.75 -0.90 16 2 C 0.02 0.67 7.33 43.58 0.32 0.99 16 3 C -0.23 -7.27 8.83 22.40 0.20 -7.07 16 4 C 0.02 0.67 5.86 25.04 0.15 0.82 16 5 C -0.10 -3.12 1.34 -53.67 -0.07 -3.19 16 6 C 0.53 19.17 5.83 87.66 0.51 19.68 16 7 O -0.50 -23.55 10.60 -3.05 -0.03 -23.58 16 8 N -0.60 -17.61 2.49 -795.01 -1.98 -19.59 16 9 C 0.11 2.22 4.60 86.36 0.40 2.62 16 10 C -0.12 -1.81 5.36 30.67 0.16 -1.64 16 11 C -0.09 -1.43 2.68 -10.76 -0.03 -1.46 16 12 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 13 C -0.14 -1.78 9.19 71.98 0.66 -1.12 16 14 C -0.11 -2.51 4.65 30.68 0.14 -2.37 16 15 C 0.15 4.71 2.92 44.97 0.13 4.84 16 16 H 0.06 2.05 8.14 -2.39 -0.02 2.04 16 17 C 0.16 6.78 4.87 86.38 0.42 7.20 16 18 N -0.71 -38.11 3.30 -343.47 -1.13 -39.24 16 19 C -0.21 -12.69 9.85 84.03 0.83 -11.86 16 20 H 0.06 3.69 7.83 -2.91 -0.02 3.66 16 21 C -0.08 -5.01 5.50 84.86 0.47 -4.54 16 22 N -0.97 -62.88 13.06 21.65 0.28 -62.59 16 23 Si 0.96 49.88 29.55 68.60 2.03 51.90 16 24 H -0.30 -15.43 7.11 99.48 0.71 -14.72 16 25 H -0.30 -15.26 7.11 99.48 0.71 -14.56 16 26 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 27 C -0.11 -2.15 9.25 30.60 0.28 -1.87 16 28 C -0.14 -3.96 9.75 30.60 0.30 -3.66 16 29 O 0.09 2.84 11.19 71.66 0.80 3.64 16 30 N -0.39 -12.40 12.07 -49.56 -0.60 -12.99 16 31 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.16 5.48 6.98 -2.91 -0.02 5.46 16 35 H 0.07 1.36 7.60 -2.39 -0.02 1.34 16 36 H 0.09 1.71 5.25 -2.39 -0.01 1.70 16 37 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 39 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.03 1.38 6.18 -2.39 -0.01 1.37 16 45 H 0.01 0.57 8.12 -2.39 -0.02 0.55 16 46 H 0.37 21.12 7.06 -92.71 -0.65 20.47 16 47 H 0.24 15.41 8.31 -92.70 -0.77 14.64 16 48 H 0.12 2.14 8.14 -2.38 -0.02 2.12 16 49 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 50 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 51 H 0.10 3.10 7.92 -2.39 -0.02 3.08 16 Total: -1.00 -78.00 399.25 5.26 -72.74 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: 0.28 Total: 33.24 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 5.61 Total: -3.53 kcal Atomic # 7 Polarization: -130.99 SS G_CDS: -3.43 Total: -134.42 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: 0.77 Total: -19.94 kcal Atomic # 14 Polarization: 49.88 SS G_CDS: 2.03 Total: 51.90 kcal Total: -78.00 5.26 -72.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565970899.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.228 kcal (2) G-P(sol) polarization free energy of solvation -78.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds