Wall clock time and date at job start Wed Apr 1 2020 04:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.34863 * 119.10457 * 2 1 4 4 C 1.41670 * 119.34486 * 180.02562 * 3 2 1 5 5 O 1.22080 * 121.07143 * 179.97438 * 4 3 2 6 6 C 1.47110 * 117.85675 * 359.97438 * 4 3 2 7 7 C 1.47291 * 120.87674 * 180.02562 * 6 4 3 8 8 O 1.21612 * 120.00092 * 39.84164 * 7 6 4 9 9 N 1.34782 * 119.99664 * 219.83851 * 7 6 4 10 10 C 1.46926 * 120.62954 * 4.78327 * 9 7 6 11 11 C 1.53193 * 108.77283 * 126.41589 * 10 9 7 12 12 C 1.53043 * 109.31087 * 54.63260 * 11 10 9 13 13 C 1.53067 * 109.65969 * 298.69862 * 12 11 10 14 14 C 1.46926 * 120.62784 * 184.81045 * 9 7 6 15 15 H 1.08998 * 109.58427 * 113.65476 * 14 9 7 16 16 C 1.53002 * 109.58850 * 353.37276 * 14 9 7 17 17 H 1.08998 * 109.47042 * 54.97604 * 16 14 9 18 18 C 1.52994 * 109.47032 * 174.98290 * 16 14 9 19 19 N 1.46500 * 109.47008 * 294.98285 * 16 14 9 20 20 C 1.36938 * 120.00284 * 155.00231 * 19 16 14 21 21 H 1.07996 * 119.99623 * 359.97438 * 20 19 16 22 22 C 1.38807 * 119.99813 * 179.72618 * 20 19 16 23 23 N 1.31618 * 120.00527 * 0.26854 * 22 20 19 24 24 Si 1.86806 * 119.99530 * 180.27319 * 22 20 19 25 25 H 1.48507 * 109.47119 * 89.99750 * 24 22 20 26 26 H 1.48501 * 109.47182 * 209.99456 * 24 22 20 27 27 H 1.48496 * 109.47246 * 329.99475 * 24 22 20 28 28 C 1.37985 * 118.23656 * 0.27230 * 6 4 3 29 29 N 1.34343 * 120.37176 * 359.46755 * 28 6 4 30 30 C 1.46500 * 118.80582 * 180.24240 * 29 28 6 31 31 H 1.09005 * 109.47221 * 96.06039 * 1 2 3 32 32 H 1.09000 * 109.47525 * 216.06107 * 1 2 3 33 33 H 1.09006 * 109.47447 * 336.06066 * 1 2 3 34 34 H 1.07999 * 120.32869 * 359.97026 * 3 2 1 35 35 H 1.09004 * 109.58839 * 246.20072 * 10 9 7 36 36 H 1.08996 * 109.58544 * 6.62899 * 10 9 7 37 37 H 1.08993 * 109.50017 * 174.58709 * 11 10 9 38 38 H 1.09005 * 109.49849 * 294.64979 * 11 10 9 39 39 H 1.08999 * 109.45704 * 58.65855 * 12 11 10 40 40 H 1.09008 * 109.45926 * 178.61258 * 12 11 10 41 41 H 1.09002 * 109.39187 * 301.27688 * 13 12 11 42 42 H 1.09009 * 109.62410 * 181.17035 * 13 12 11 43 43 H 1.09002 * 109.47020 * 175.30955 * 18 16 14 44 44 H 1.09002 * 109.47137 * 295.30141 * 18 16 14 45 45 H 1.09001 * 109.47362 * 55.30512 * 18 16 14 46 46 H 0.97012 * 120.00013 * 335.00073 * 19 16 14 47 47 H 0.96996 * 119.99871 * 180.02562 * 23 22 20 48 48 H 1.08003 * 119.81391 * 179.70214 * 28 6 4 49 49 H 1.09005 * 109.47266 * 273.38259 * 30 29 28 50 50 H 1.09000 * 109.47045 * 33.37384 * 30 29 28 51 51 H 1.09002 * 109.47502 * 153.37834 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1629 1.1783 0.0000 4 6 3.5796 1.1843 -0.0006 5 8 4.2053 2.2326 -0.0010 6 6 4.2724 -0.1134 -0.0005 7 6 5.7436 -0.1849 -0.0005 8 8 6.3902 0.5933 0.6742 9 7 6.3732 -1.1128 -0.7483 10 6 5.6128 -1.9909 -1.6481 11 6 6.2111 -1.8923 -3.0549 12 6 7.7084 -2.2024 -2.9910 13 6 8.4088 -1.1776 -2.0954 14 6 7.8328 -1.2658 -0.6787 15 1 8.0782 -2.2348 -0.2441 16 6 8.4247 -0.1511 0.1862 17 1 7.9412 -0.1535 1.1630 18 6 9.9269 -0.3837 0.3600 19 7 8.2030 1.1422 -0.4652 20 6 8.1605 2.2878 0.2838 21 1 8.2900 2.2377 1.3548 22 6 7.9560 3.5138 -0.3341 23 7 7.7977 3.5748 -1.6393 24 14 7.9057 5.0774 0.6869 25 1 9.2751 5.6412 0.7967 26 1 7.0137 6.0677 0.0320 27 1 7.3882 4.7662 2.0436 28 6 3.5075 -1.2619 -0.0057 29 7 2.1663 -1.1847 0.0001 30 6 1.3878 -2.4258 -0.0003 31 1 -0.3634 -0.1085 -1.0220 32 1 -0.3634 -0.8307 0.6049 33 1 -0.3634 0.9393 0.4170 34 1 1.6137 2.1083 -0.0005 35 1 5.6773 -3.0201 -1.2949 36 1 4.5699 -1.6751 -1.6715 37 1 5.7186 -2.6100 -3.7108 38 1 6.0641 -0.8843 -3.4429 39 1 7.8551 -3.2012 -2.5800 40 1 8.1318 -2.1571 -3.9945 41 1 8.2438 -0.1764 -2.4935 42 1 9.4783 -1.3866 -2.0669 43 1 10.3634 0.4532 0.9052 44 1 10.0896 -1.3055 0.9185 45 1 10.3978 -0.4644 -0.6197 46 1 8.0862 1.1871 -1.4272 47 1 7.6552 4.4316 -2.0710 48 1 3.9897 -2.2282 -0.0107 49 1 1.2418 -2.7628 -1.0266 50 1 1.9241 -3.1912 0.5605 51 1 0.4184 -2.2468 0.4648 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566528481.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:58 Heat of formation + Delta-G solvation = 5.094279 kcal Electronic energy + Delta-G solvation = -33555.998031 eV Core-core repulsion = 29457.372156 eV Total energy + Delta-G solvation = -4098.625875 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.24914 -41.08127 -39.00430 -37.82195 -36.93375 -34.62197 -33.96903 -33.71979 -32.93892 -31.21839 -29.67639 -29.06532 -27.58555 -26.31578 -25.72652 -24.69533 -24.62847 -22.84331 -21.85745 -21.30059 -20.04770 -19.08195 -18.62864 -18.01618 -17.34716 -16.98872 -16.75415 -16.48255 -16.25904 -15.88885 -15.66528 -15.46723 -15.32990 -14.88589 -14.77852 -14.60672 -14.41668 -14.17716 -13.98893 -13.83401 -13.81716 -13.68587 -13.52534 -13.22734 -13.11226 -13.01874 -12.79918 -12.63658 -12.56148 -12.42943 -12.30796 -12.17621 -11.89925 -11.68405 -11.49902 -11.35213 -11.24473 -10.78078 -10.35485 -10.26625 -9.62748 -9.26169 -8.87435 -8.51850 -7.74993 -4.89124 0.02778 0.42755 1.30058 1.39660 1.44825 1.57868 2.07629 2.38770 2.67380 2.92571 3.34500 3.61788 3.64414 3.68325 3.85716 3.91963 3.97383 4.05838 4.13652 4.28483 4.34914 4.37026 4.42211 4.45790 4.53226 4.55021 4.66293 4.68688 4.73481 4.77694 4.85279 4.88220 4.90176 4.94670 4.97871 5.05106 5.11709 5.16588 5.18198 5.29130 5.33704 5.44427 5.50624 5.60664 5.62109 5.69271 5.84936 5.88673 6.07025 6.49656 6.82837 7.29912 7.55763 7.84576 8.38065 8.57940 9.51601 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009391 B = 0.005372 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.827395 B = 5210.782459 C = 7328.878507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.192 3.808 3 C -0.321 4.321 4 C 0.366 3.634 5 O -0.571 6.571 6 C -0.333 4.333 7 C 0.539 3.461 8 O -0.500 6.500 9 N -0.612 5.612 10 C 0.097 3.903 11 C -0.134 4.134 12 C -0.106 4.106 13 C -0.131 4.131 14 C 0.153 3.847 15 H 0.105 0.895 16 C 0.162 3.838 17 H 0.049 0.951 18 C -0.159 4.159 19 N -0.700 5.700 20 C -0.143 4.143 21 H 0.044 0.956 22 C -0.093 4.093 23 N -0.980 5.980 24 Si 0.948 3.052 25 H -0.281 1.281 26 H -0.308 1.308 27 H -0.293 1.293 28 C 0.199 3.801 29 N -0.460 5.460 30 C 0.033 3.967 31 H 0.112 0.888 32 H 0.119 0.881 33 H 0.090 0.910 34 H 0.139 0.861 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.021 0.979 39 H 0.096 0.904 40 H 0.065 0.935 41 H 0.023 0.977 42 H 0.079 0.921 43 H 0.024 0.976 44 H 0.073 0.927 45 H 0.050 0.950 46 H 0.364 0.636 47 H 0.234 0.766 48 H 0.216 0.784 49 H 0.108 0.892 50 H 0.115 0.885 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.697 -29.819 -0.989 35.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.084 3.916 3 C -0.344 4.344 4 C 0.259 3.741 5 O -0.459 6.459 6 C -0.344 4.344 7 C 0.327 3.673 8 O -0.372 6.372 9 N -0.348 5.348 10 C -0.024 4.024 11 C -0.173 4.173 12 C -0.144 4.144 13 C -0.169 4.169 14 C 0.050 3.950 15 H 0.123 0.877 16 C 0.054 3.946 17 H 0.067 0.933 18 C -0.219 4.219 19 N -0.339 5.339 20 C -0.277 4.277 21 H 0.062 0.938 22 C -0.282 4.282 23 N -0.636 5.636 24 Si 0.782 3.218 25 H -0.209 1.209 26 H -0.235 1.235 27 H -0.220 1.220 28 C 0.067 3.933 29 N -0.144 5.144 30 C -0.105 4.105 31 H 0.130 0.870 32 H 0.137 0.863 33 H 0.109 0.891 34 H 0.157 0.843 35 H 0.133 0.867 36 H 0.103 0.897 37 H 0.127 0.873 38 H 0.040 0.960 39 H 0.114 0.886 40 H 0.084 0.916 41 H 0.042 0.958 42 H 0.098 0.902 43 H 0.043 0.957 44 H 0.092 0.908 45 H 0.069 0.931 46 H 0.198 0.802 47 H 0.043 0.957 48 H 0.232 0.768 49 H 0.126 0.874 50 H 0.133 0.867 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -19.183 -28.941 -0.409 34.723 hybrid contribution 0.423 2.693 0.052 2.727 sum -18.760 -26.247 -0.357 32.264 Atomic orbital electron populations 1.21392 0.83815 1.06569 1.06145 1.20721 0.96917 0.83903 0.90096 1.22047 0.94131 0.99455 1.18810 1.19235 0.90580 0.88467 0.75837 1.90923 1.71850 1.36159 1.47001 1.22416 0.94657 0.95774 1.21506 1.18121 0.86834 0.80464 0.81886 1.91057 1.65382 1.37993 1.42798 1.47903 1.06841 1.36789 1.43281 1.22289 0.95882 0.95093 0.89127 1.21928 0.97003 1.01025 0.97302 1.21472 0.94517 0.99017 0.99365 1.21953 1.00588 0.98997 0.95403 1.21494 0.79147 0.98514 0.95840 0.87728 1.20798 0.92587 0.84908 0.96311 0.93333 1.22426 0.98495 1.00139 1.00862 1.42440 1.84695 1.01524 1.05279 1.19036 1.32679 0.86121 0.89829 0.93830 1.25054 1.06916 0.99697 0.96497 1.69764 1.62366 1.22787 1.08689 0.85416 0.76772 0.81893 0.77704 1.20858 1.23549 1.21976 1.22640 0.82633 0.99271 0.88740 1.43135 1.04905 1.08616 1.57765 1.23129 0.98479 0.82002 1.06924 0.86960 0.86279 0.89136 0.84324 0.86717 0.89670 0.87286 0.95985 0.88567 0.91646 0.95834 0.90219 0.95719 0.90797 0.93112 0.80217 0.95704 0.76754 0.87383 0.86653 0.86128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 9.31 71.23 0.66 0.03 16 2 C 0.19 3.32 6.64 41.20 0.27 3.59 16 3 C -0.32 -10.43 9.57 22.34 0.21 -10.21 16 4 C 0.37 17.37 6.94 25.45 0.18 17.55 16 5 O -0.57 -37.32 17.06 4.50 0.08 -37.24 16 6 C -0.33 -12.63 5.34 -18.63 -0.10 -12.73 16 7 C 0.54 24.43 6.92 86.62 0.60 25.03 16 8 O -0.50 -29.41 9.10 6.00 0.05 -29.35 16 9 N -0.61 -20.73 2.97 -799.02 -2.37 -23.10 16 10 C 0.10 1.97 4.90 86.36 0.42 2.39 16 11 C -0.13 -2.92 6.09 30.67 0.19 -2.73 16 12 C -0.11 -2.33 5.88 30.63 0.18 -2.15 16 13 C -0.13 -4.28 4.87 30.68 0.15 -4.13 16 14 C 0.15 5.26 2.72 44.98 0.12 5.38 16 15 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 16 C 0.16 7.54 1.88 44.99 0.08 7.63 16 17 H 0.05 2.56 5.97 -4.10 -0.02 2.54 16 18 C -0.16 -6.36 9.36 71.98 0.67 -5.69 16 19 N -0.70 -41.96 3.56 -322.95 -1.15 -43.11 16 20 C -0.14 -9.89 7.93 84.03 0.67 -9.23 16 21 H 0.04 3.09 7.83 -2.91 -0.02 3.06 16 22 C -0.09 -6.66 5.50 84.86 0.47 -6.19 16 23 N -0.98 -73.20 13.06 21.65 0.28 -72.92 16 24 Si 0.95 59.72 29.55 68.60 2.03 61.75 16 25 H -0.28 -16.48 7.11 99.48 0.71 -15.78 16 26 H -0.31 -19.67 7.11 99.48 0.71 -18.96 16 27 H -0.29 -18.45 7.11 99.48 0.71 -17.75 16 28 C 0.20 3.82 7.64 84.25 0.64 4.47 16 29 N -0.46 -5.50 2.97 -532.77 -1.58 -7.08 16 30 C 0.03 -0.08 10.14 127.77 1.29 1.22 16 31 H 0.11 0.19 8.14 -2.38 -0.02 0.17 16 32 H 0.12 -0.26 5.92 -2.39 -0.01 -0.28 16 33 H 0.09 0.61 7.97 -2.38 -0.02 0.59 16 34 H 0.14 4.47 8.01 -2.91 -0.02 4.44 16 35 H 0.12 1.13 8.13 -2.38 -0.02 1.11 16 36 H 0.09 1.59 4.63 -2.39 -0.01 1.58 16 37 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 39 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.02 1.03 6.08 -2.39 -0.01 1.02 16 42 H 0.08 2.40 6.77 -2.38 -0.02 2.38 16 43 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.05 1.93 6.51 -2.39 -0.02 1.91 16 46 H 0.36 23.49 5.67 -92.70 -0.53 22.97 16 47 H 0.23 17.21 8.31 -92.71 -0.77 16.44 16 48 H 0.22 1.99 6.42 -2.91 -0.02 1.97 16 49 H 0.11 -0.64 8.14 -2.38 -0.02 -0.66 16 50 H 0.11 -0.70 8.02 -2.39 -0.02 -0.72 16 51 H 0.12 -0.78 5.54 -2.39 -0.01 -0.79 16 Total: -1.00 -125.13 386.27 4.47 -120.65 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.42 Total: 16.18 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 6.72 Total: 14.22 kcal Atomic # 7 Polarization: -141.39 SS G_CDS: -4.82 Total: -146.21 kcal Atomic # 8 Polarization: -66.73 SS G_CDS: 0.13 Total: -66.60 kcal Atomic # 14 Polarization: 59.72 SS G_CDS: 2.03 Total: 61.75 kcal Total: -125.13 4.47 -120.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566528481.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.749 kcal (2) G-P(sol) polarization free energy of solvation -125.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -120.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds