Wall clock time and date at job start Wed Apr 1 2020 04:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41380 * 126.80044 * 2 1 4 4 C 1.35450 * 103.98886 * 179.97438 * 3 2 1 5 5 C 1.50694 * 126.77868 * 179.97438 * 4 3 2 6 6 C 1.50695 * 115.55561 * 29.78712 * 5 4 3 7 7 O 1.21279 * 120.00445 * 246.07425 * 6 5 4 8 8 N 1.34783 * 119.99537 * 66.06769 * 6 5 4 9 9 C 1.46921 * 120.63022 * 5.15100 * 8 6 5 10 10 C 1.53192 * 108.77374 * 126.36687 * 9 8 6 11 11 C 1.53039 * 109.31646 * 54.63120 * 10 9 8 12 12 C 1.53043 * 109.54037 * 298.64124 * 11 10 9 13 13 C 1.46925 * 120.62836 * 184.86876 * 8 6 5 14 14 H 1.08998 * 109.58838 * 113.84673 * 13 8 6 15 15 C 1.52998 * 109.58956 * 353.42211 * 13 8 6 16 16 C 1.52994 * 109.47591 * 178.70656 * 15 13 8 17 17 N 1.46500 * 109.47655 * 185.30973 * 16 15 13 18 18 C 1.36938 * 120.00288 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00243 * 359.97438 * 18 17 16 20 20 C 1.38816 * 119.99692 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00046 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99628 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47465 * 89.99815 * 22 20 18 24 24 H 1.48509 * 109.47162 * 210.00166 * 22 20 18 25 25 H 1.48496 * 109.47202 * 329.99568 * 22 20 18 26 26 C 1.53003 * 117.49570 * 244.08238 * 5 4 3 27 27 C 1.52997 * 60.00124 * 252.50930 * 26 5 4 28 28 O 1.34037 * 106.44202 * 359.97438 * 4 3 2 29 29 N 1.20928 * 111.57144 * 0.02562 * 28 4 3 30 30 H 1.09005 * 109.46852 * 90.00307 * 1 2 3 31 31 H 1.08994 * 109.46918 * 209.99696 * 1 2 3 32 32 H 1.09001 * 109.47449 * 330.00040 * 1 2 3 33 33 H 1.08009 * 128.00290 * 359.97438 * 3 2 1 34 34 H 1.09003 * 109.58894 * 246.15023 * 9 8 6 35 35 H 1.08993 * 109.58925 * 6.58097 * 9 8 6 36 36 H 1.08997 * 109.50070 * 174.58961 * 10 9 8 37 37 H 1.09006 * 109.49678 * 294.64917 * 10 9 8 38 38 H 1.09000 * 109.45724 * 58.65403 * 11 10 9 39 39 H 1.08996 * 109.46431 * 178.62816 * 11 10 9 40 40 H 1.08999 * 109.49494 * 181.31482 * 12 11 10 41 41 H 1.09005 * 109.48749 * 301.37627 * 12 11 10 42 42 H 1.09011 * 109.47191 * 298.70549 * 15 13 8 43 43 H 1.09003 * 109.47443 * 58.69773 * 15 13 8 44 44 H 1.09003 * 109.46704 * 305.30628 * 16 15 13 45 45 H 1.08995 * 109.47572 * 65.30703 * 16 15 13 46 46 H 0.97003 * 119.99942 * 359.97438 * 17 16 15 47 47 H 0.97001 * 119.99302 * 179.97438 * 21 20 18 48 48 H 1.09003 * 117.49930 * 359.97438 * 26 5 4 49 49 H 1.09000 * 117.50197 * 145.01897 * 26 5 4 50 50 H 1.09000 * 117.49916 * 252.50998 * 27 26 5 51 51 H 1.09002 * 117.50071 * 107.48879 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6025 0.6069 0.0006 5 6 4.9021 1.3697 0.0003 6 6 4.8654 2.7168 0.6748 7 8 5.0215 3.7266 0.0215 8 7 4.6589 2.7994 2.0041 9 6 4.5803 1.5843 2.8263 10 6 5.5817 1.7037 3.9795 11 6 5.3170 3.0006 4.7476 12 6 5.5110 4.1974 3.8135 13 6 4.5143 4.1064 2.6594 14 1 3.5008 4.2111 3.0465 15 6 4.7985 5.2205 1.6500 16 6 4.6158 6.5806 2.3266 17 7 4.7634 7.6451 1.3310 18 6 4.6394 8.9561 1.7067 19 1 4.4324 9.2053 2.7370 20 6 4.7797 9.9647 0.7634 21 7 5.0324 9.6610 -0.4921 22 14 4.6113 11.7530 1.2761 23 1 5.9407 12.2811 1.6744 24 1 4.0841 12.5470 0.1372 25 1 3.6748 11.8526 2.4243 26 6 5.8118 1.2148 -1.2201 27 6 6.1962 0.5606 0.1084 28 8 3.4538 -0.7252 0.0015 29 7 2.2868 -1.0423 0.0010 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 2.0708 2.1744 -0.0004 34 1 3.5722 1.4790 3.2273 35 1 4.8262 0.7145 2.2174 36 1 5.4663 0.8530 4.6511 37 1 6.5960 1.7171 3.5805 38 1 4.2946 2.9968 5.1252 39 1 6.0126 3.0761 5.5834 40 1 5.3451 5.1215 4.3672 41 1 6.5261 4.1881 3.4166 42 1 5.8225 5.1298 1.2874 43 1 4.1074 5.1361 0.8114 44 1 3.6222 6.6344 2.7715 45 1 5.3694 6.7037 3.1044 46 1 4.9489 7.4213 0.4055 47 1 5.1301 10.3659 -1.1513 48 1 5.4704 0.5609 -2.0226 49 1 6.3838 2.0874 -1.5355 50 1 7.0210 1.0028 0.6671 51 1 6.1075 -0.5235 0.1799 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568391849.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:43 Heat of formation + Delta-G solvation = 76.075531 kcal Electronic energy + Delta-G solvation = -31910.520662 eV Core-core repulsion = 27814.972765 eV Total energy + Delta-G solvation = -4095.547897 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.20495 -40.91956 -38.19691 -36.82473 -35.11067 -35.00856 -32.99507 -32.76666 -31.72801 -30.60367 -28.96910 -27.90711 -25.95555 -24.45072 -23.97628 -23.49556 -22.95698 -22.23894 -21.38540 -20.66208 -20.20055 -18.89778 -17.86253 -17.82091 -17.00469 -16.55341 -16.17674 -15.46994 -15.16254 -14.84004 -14.65317 -14.57343 -14.26624 -13.95111 -13.66157 -13.63967 -13.50437 -13.27036 -13.21155 -13.16357 -12.94361 -12.72514 -12.61634 -12.12224 -11.94298 -11.68049 -11.47263 -11.38702 -11.33632 -11.13771 -10.92429 -10.89637 -10.82255 -10.69970 -10.43983 -10.37870 -10.25282 -9.96329 -9.60145 -9.45405 -8.92794 -8.77990 -8.54489 -6.79913 -5.66095 -2.94284 1.11565 1.95098 2.14910 2.67908 2.98490 3.37299 3.48785 3.53142 3.55430 3.91350 3.93896 4.13969 4.40814 4.47063 4.58435 4.66099 4.68393 4.74864 4.82306 4.96326 4.97599 5.15742 5.17527 5.18296 5.22047 5.27033 5.27591 5.35953 5.46870 5.50843 5.53620 5.57304 5.59873 5.65457 5.74146 5.76505 5.77959 5.85549 5.93409 5.96760 6.10172 6.21769 6.35568 6.37378 6.54809 6.64566 7.05847 7.14198 7.32877 7.77621 7.98237 8.12484 8.52943 9.63477 10.25229 10.59990 11.56827 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012057 B = 0.002802 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.827700 B = 9989.361955 C =10724.142152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.022 3.978 3 C -0.215 4.215 4 C 0.013 3.987 5 C -0.094 4.094 6 C 0.555 3.445 7 O -0.496 6.496 8 N -0.598 5.598 9 C 0.108 3.892 10 C -0.133 4.133 11 C -0.120 4.120 12 C -0.133 4.133 13 C 0.152 3.848 14 H 0.073 0.927 15 C -0.114 4.114 16 C 0.148 3.852 17 N -0.731 5.731 18 C -0.237 4.237 19 H 0.069 0.931 20 C -0.016 4.016 21 N -0.932 5.932 22 Si 0.906 3.094 23 H -0.291 1.291 24 H -0.292 1.292 25 H -0.283 1.283 26 C -0.124 4.124 27 C -0.150 4.150 28 O 0.099 5.901 29 N -0.366 5.366 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.171 0.829 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.012 0.988 45 H 0.015 0.985 46 H 0.385 0.615 47 H 0.254 0.746 48 H 0.108 0.892 49 H 0.120 0.880 50 H 0.111 0.889 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.030 -26.232 5.851 26.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.137 4.137 3 C -0.236 4.236 4 C -0.050 4.050 5 C -0.098 4.098 6 C 0.340 3.660 7 O -0.370 6.370 8 N -0.332 5.332 9 C -0.015 4.015 10 C -0.172 4.172 11 C -0.158 4.158 12 C -0.171 4.171 13 C 0.050 3.950 14 H 0.091 0.909 15 C -0.152 4.152 16 C 0.020 3.980 17 N -0.375 5.375 18 C -0.368 4.368 19 H 0.087 0.913 20 C -0.212 4.212 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.161 4.161 27 C -0.187 4.187 28 O 0.033 5.967 29 N -0.071 5.071 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.189 0.811 34 H 0.084 0.916 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.105 0.895 44 H 0.029 0.971 45 H 0.033 0.967 46 H 0.219 0.781 47 H 0.064 0.936 48 H 0.126 0.874 49 H 0.138 0.862 50 H 0.129 0.871 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.217 -26.846 5.600 27.513 hybrid contribution -0.229 1.713 0.062 1.730 sum -2.446 -25.133 5.662 25.879 Atomic orbital electron populations 1.20190 0.85754 1.03899 1.03564 1.23581 0.99112 0.88569 1.02408 1.22400 0.90842 1.01396 1.08963 1.22832 0.95553 0.83527 1.03101 1.19543 0.87446 0.95159 1.07674 1.18940 0.77294 0.87878 0.81927 1.90920 1.47195 1.34263 1.64618 1.48040 1.71362 1.07530 1.06242 1.21733 0.99655 0.87137 0.92951 1.21911 0.99654 0.98528 0.97076 1.21542 1.01928 0.94289 0.98044 1.21991 1.00062 0.98753 0.96328 1.21295 0.98836 0.81512 0.93367 0.90918 1.22261 1.04035 0.91941 0.96953 1.20787 0.96976 0.87721 0.92507 1.42353 1.86188 1.01330 1.07630 1.19238 1.40482 0.83122 0.93993 0.91340 1.24747 1.03056 0.97852 0.95546 1.69683 1.55929 1.31485 1.00996 0.86204 0.77569 0.85401 0.77122 1.21809 1.21818 1.20837 1.23212 0.98671 1.03490 0.90777 1.23238 0.94576 0.99888 1.00998 1.84788 1.21821 1.22048 1.67998 1.73847 0.89099 1.23766 1.20389 0.90025 0.90524 0.89781 0.81124 0.91589 0.89907 0.90871 0.91351 0.91833 0.91628 0.89836 0.91341 0.90963 0.89486 0.97051 0.96685 0.78081 0.93609 0.87358 0.86203 0.87103 0.86902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.47 36.01 0.38 -0.19 16 2 C 0.02 0.23 7.33 -82.10 -0.60 -0.37 16 3 C -0.21 -2.38 10.59 -39.38 -0.42 -2.79 16 4 C 0.01 0.14 5.60 -35.31 -0.20 -0.05 16 5 C -0.09 -0.97 1.30 -156.81 -0.20 -1.18 16 6 C 0.55 7.39 6.49 -10.99 -0.07 7.32 16 7 O -0.50 -8.68 12.12 5.56 0.07 -8.62 16 8 N -0.60 -7.05 2.98 -165.48 -0.49 -7.54 16 9 C 0.11 0.96 5.95 -3.71 -0.02 0.94 16 10 C -0.13 -1.03 6.08 -26.61 -0.16 -1.19 16 11 C -0.12 -1.06 5.89 -26.69 -0.16 -1.21 16 12 C -0.13 -1.56 4.87 -26.83 -0.13 -1.69 16 13 C 0.15 2.05 2.98 -67.82 -0.20 1.85 16 14 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 15 C -0.11 -2.06 3.24 -26.74 -0.09 -2.15 16 16 C 0.15 3.15 5.80 -4.05 -0.02 3.13 16 17 N -0.73 -19.87 5.60 -59.91 -0.34 -20.20 16 18 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 19 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 20 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 21 N -0.93 -29.46 13.06 55.49 0.72 -28.74 16 22 Si 0.91 23.09 29.55 -169.99 -5.02 18.06 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 25 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 26 C -0.12 -1.14 9.76 -26.73 -0.26 -1.40 16 27 C -0.15 -1.15 8.99 -26.73 -0.24 -1.39 16 28 O 0.10 1.09 10.97 17.18 0.19 1.28 16 29 N -0.37 -4.29 12.07 33.42 0.40 -3.89 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.17 1.91 8.06 -52.48 -0.42 1.49 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.68 5.12 -51.93 -0.27 0.41 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 1.03 6.91 -51.93 -0.36 0.67 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 1.43 7.14 -51.92 -0.37 1.06 16 43 H 0.09 1.77 6.33 -51.93 -0.33 1.45 16 44 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 45 H 0.02 0.32 6.90 -51.93 -0.36 -0.04 16 46 H 0.39 11.22 7.67 -40.82 -0.31 10.90 16 47 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 48 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.12 1.22 8.01 -51.93 -0.42 0.80 16 50 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 51 H 0.11 0.69 8.00 -51.93 -0.42 0.28 16 LS Contribution 404.59 15.07 6.10 6.10 Total: -1.00 -34.55 404.59 -9.31 -43.85 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -8.29 Total: 7.76 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -2.65 Total: -8.07 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: 0.30 Total: -60.37 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: 0.26 Total: -7.34 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.55 -9.31 -43.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568391849.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.928 kcal (2) G-P(sol) polarization free energy of solvation -34.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds