Wall clock time and date at job start Wed Apr 1 2020 04:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41380 * 126.80044 * 2 1 4 4 C 1.35450 * 103.98886 * 179.97438 * 3 2 1 5 5 C 1.50694 * 126.77868 * 179.97438 * 4 3 2 6 6 C 1.50695 * 115.55561 * 29.78712 * 5 4 3 7 7 O 1.21279 * 120.00445 * 246.07425 * 6 5 4 8 8 N 1.34783 * 119.99537 * 66.06769 * 6 5 4 9 9 C 1.46921 * 120.63022 * 5.15100 * 8 6 5 10 10 C 1.53192 * 108.77374 * 126.36687 * 9 8 6 11 11 C 1.53039 * 109.31646 * 54.63120 * 10 9 8 12 12 C 1.53043 * 109.54037 * 298.64124 * 11 10 9 13 13 C 1.46925 * 120.62836 * 184.86876 * 8 6 5 14 14 H 1.08998 * 109.58838 * 113.84673 * 13 8 6 15 15 C 1.52998 * 109.58956 * 353.42211 * 13 8 6 16 16 C 1.52994 * 109.47591 * 178.70656 * 15 13 8 17 17 N 1.46500 * 109.47655 * 185.30973 * 16 15 13 18 18 C 1.36938 * 120.00288 * 179.97438 * 17 16 15 19 19 H 1.07997 * 120.00243 * 359.97438 * 18 17 16 20 20 C 1.38816 * 119.99692 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00046 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99628 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47465 * 89.99815 * 22 20 18 24 24 H 1.48509 * 109.47162 * 210.00166 * 22 20 18 25 25 H 1.48496 * 109.47202 * 329.99568 * 22 20 18 26 26 C 1.53003 * 117.49570 * 244.08238 * 5 4 3 27 27 C 1.52997 * 60.00124 * 252.50930 * 26 5 4 28 28 O 1.34037 * 106.44202 * 359.97438 * 4 3 2 29 29 N 1.20928 * 111.57144 * 0.02562 * 28 4 3 30 30 H 1.09005 * 109.46852 * 90.00307 * 1 2 3 31 31 H 1.08994 * 109.46918 * 209.99696 * 1 2 3 32 32 H 1.09001 * 109.47449 * 330.00040 * 1 2 3 33 33 H 1.08009 * 128.00290 * 359.97438 * 3 2 1 34 34 H 1.09003 * 109.58894 * 246.15023 * 9 8 6 35 35 H 1.08993 * 109.58925 * 6.58097 * 9 8 6 36 36 H 1.08997 * 109.50070 * 174.58961 * 10 9 8 37 37 H 1.09006 * 109.49678 * 294.64917 * 10 9 8 38 38 H 1.09000 * 109.45724 * 58.65403 * 11 10 9 39 39 H 1.08996 * 109.46431 * 178.62816 * 11 10 9 40 40 H 1.08999 * 109.49494 * 181.31482 * 12 11 10 41 41 H 1.09005 * 109.48749 * 301.37627 * 12 11 10 42 42 H 1.09011 * 109.47191 * 298.70549 * 15 13 8 43 43 H 1.09003 * 109.47443 * 58.69773 * 15 13 8 44 44 H 1.09003 * 109.46704 * 305.30628 * 16 15 13 45 45 H 1.08995 * 109.47572 * 65.30703 * 16 15 13 46 46 H 0.97003 * 119.99942 * 359.97438 * 17 16 15 47 47 H 0.97001 * 119.99302 * 179.97438 * 21 20 18 48 48 H 1.09003 * 117.49930 * 359.97438 * 26 5 4 49 49 H 1.09000 * 117.50197 * 145.01897 * 26 5 4 50 50 H 1.09000 * 117.49916 * 252.50998 * 27 26 5 51 51 H 1.09002 * 117.50071 * 107.48879 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6025 0.6069 0.0006 5 6 4.9021 1.3697 0.0003 6 6 4.8654 2.7168 0.6748 7 8 5.0215 3.7266 0.0215 8 7 4.6589 2.7994 2.0041 9 6 4.5803 1.5843 2.8263 10 6 5.5817 1.7037 3.9795 11 6 5.3170 3.0006 4.7476 12 6 5.5110 4.1974 3.8135 13 6 4.5143 4.1064 2.6594 14 1 3.5008 4.2111 3.0465 15 6 4.7985 5.2205 1.6500 16 6 4.6158 6.5806 2.3266 17 7 4.7634 7.6451 1.3310 18 6 4.6394 8.9561 1.7067 19 1 4.4324 9.2053 2.7370 20 6 4.7797 9.9647 0.7634 21 7 5.0324 9.6610 -0.4921 22 14 4.6113 11.7530 1.2761 23 1 5.9407 12.2811 1.6744 24 1 4.0841 12.5470 0.1372 25 1 3.6748 11.8526 2.4243 26 6 5.8118 1.2148 -1.2201 27 6 6.1962 0.5606 0.1084 28 8 3.4538 -0.7252 0.0015 29 7 2.2868 -1.0423 0.0010 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 2.0708 2.1744 -0.0004 34 1 3.5722 1.4790 3.2273 35 1 4.8262 0.7145 2.2174 36 1 5.4663 0.8530 4.6511 37 1 6.5960 1.7171 3.5805 38 1 4.2946 2.9968 5.1252 39 1 6.0126 3.0761 5.5834 40 1 5.3451 5.1215 4.3672 41 1 6.5261 4.1881 3.4166 42 1 5.8225 5.1298 1.2874 43 1 4.1074 5.1361 0.8114 44 1 3.6222 6.6344 2.7715 45 1 5.3694 6.7037 3.1044 46 1 4.9489 7.4213 0.4055 47 1 5.1301 10.3659 -1.1513 48 1 5.4704 0.5609 -2.0226 49 1 6.3838 2.0874 -1.5355 50 1 7.0210 1.0028 0.6671 51 1 6.1075 -0.5235 0.1799 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568391849.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:42 Heat of formation + Delta-G solvation = 55.280520 kcal Electronic energy + Delta-G solvation = -31911.422402 eV Core-core repulsion = 27814.972765 eV Total energy + Delta-G solvation = -4096.449637 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -46.04114 -41.93428 -39.11475 -37.80309 -36.87773 -35.82832 -34.47292 -33.85274 -32.56880 -32.38307 -29.64687 -29.32491 -27.15791 -25.64087 -25.27813 -24.37610 -23.96236 -23.44002 -22.25193 -22.12276 -21.04438 -19.79035 -19.23677 -18.68730 -18.61724 -17.49207 -17.28368 -16.65700 -16.44230 -16.06689 -15.76675 -15.57778 -15.45140 -15.12533 -14.99422 -14.70262 -14.45065 -14.35839 -14.24997 -14.21942 -13.96676 -13.84976 -13.43313 -13.35878 -12.95390 -12.81229 -12.75242 -12.61518 -12.49142 -12.31879 -12.14772 -12.12273 -11.98115 -11.89896 -11.78992 -11.72444 -11.54089 -11.37245 -11.03134 -10.92953 -10.32194 -10.13344 -9.59386 -9.01177 -7.94828 -5.25392 0.28021 1.12917 1.19286 1.45137 1.48726 1.57157 1.71857 2.09165 2.55258 2.58628 3.13726 3.17819 3.29110 3.37623 3.63130 3.69310 3.78294 3.83845 3.90534 4.01444 4.06941 4.12039 4.19274 4.24351 4.40714 4.46547 4.48878 4.53503 4.56970 4.62222 4.64529 4.69700 4.72047 4.77621 4.79850 4.82638 4.87281 4.90770 4.96094 5.07317 5.08349 5.16286 5.17827 5.22838 5.38319 5.38451 5.48329 5.49398 5.67023 6.26203 6.33208 7.08870 7.15938 7.31138 8.08346 8.32203 9.29298 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012057 B = 0.002802 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.827700 B = 9989.361955 C =10724.142152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.023 3.977 3 C -0.232 4.232 4 C 0.023 3.977 5 C -0.106 4.106 6 C 0.551 3.449 7 O -0.550 6.550 8 N -0.593 5.593 9 C 0.105 3.895 10 C -0.128 4.128 11 C -0.115 4.115 12 C -0.129 4.129 13 C 0.157 3.843 14 H 0.081 0.919 15 C -0.091 4.091 16 C 0.148 3.852 17 N -0.749 5.749 18 C -0.248 4.248 19 H 0.079 0.921 20 C -0.081 4.081 21 N -0.973 5.973 22 Si 0.980 3.020 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.266 1.266 26 C -0.131 4.131 27 C -0.121 4.121 28 O 0.102 5.898 29 N -0.383 5.383 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.163 0.837 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.059 0.941 44 H 0.018 0.982 45 H 0.025 0.975 46 H 0.370 0.630 47 H 0.251 0.749 48 H 0.121 0.879 49 H 0.104 0.896 50 H 0.118 0.882 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.292 -28.098 8.134 29.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.135 4.135 3 C -0.253 4.253 4 C -0.041 4.041 5 C -0.111 4.111 6 C 0.338 3.662 7 O -0.428 6.428 8 N -0.325 5.325 9 C -0.017 4.017 10 C -0.166 4.166 11 C -0.153 4.153 12 C -0.168 4.168 13 C 0.054 3.946 14 H 0.098 0.902 15 C -0.129 4.129 16 C 0.022 3.978 17 N -0.391 5.391 18 C -0.379 4.379 19 H 0.096 0.904 20 C -0.273 4.273 21 N -0.624 5.624 22 Si 0.808 3.192 23 H -0.212 1.212 24 H -0.221 1.221 25 H -0.191 1.191 26 C -0.168 4.168 27 C -0.157 4.157 28 O 0.037 5.963 29 N -0.090 5.090 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.113 0.887 33 H 0.180 0.820 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.036 0.964 45 H 0.043 0.957 46 H 0.201 0.799 47 H 0.060 0.940 48 H 0.140 0.860 49 H 0.122 0.878 50 H 0.136 0.864 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.484 -28.769 7.959 29.953 hybrid contribution -0.157 2.247 -0.642 2.342 sum -2.641 -26.522 7.317 27.639 Atomic orbital electron populations 1.20335 0.83790 1.04900 1.04481 1.23998 1.00401 0.87895 1.01226 1.22442 0.91521 1.01324 1.10021 1.22775 0.95363 0.83583 1.02391 1.19328 0.88643 0.94238 1.08858 1.19398 0.76237 0.88430 0.82156 1.90903 1.49763 1.36381 1.65730 1.48101 1.70333 1.07915 1.06165 1.21988 1.00718 0.85827 0.93146 1.21914 0.99041 0.98921 0.96746 1.21523 1.02928 0.93125 0.97676 1.21936 0.98568 1.00282 0.95987 1.21118 0.99868 0.80990 0.92598 0.90160 1.21935 1.01850 0.92192 0.96943 1.20966 0.97239 0.87916 0.91726 1.42636 1.86290 1.02211 1.07934 1.19698 1.39535 0.84236 0.94456 0.90358 1.25697 1.03367 1.02650 0.95550 1.69873 1.57519 1.32717 1.02244 0.85048 0.77824 0.79360 0.76970 1.21171 1.22106 1.19073 1.23267 0.98356 1.03528 0.91663 1.23405 0.92509 1.00831 0.98991 1.84770 1.21689 1.21738 1.68073 1.73834 0.89413 1.24214 1.21517 0.89081 0.89581 0.88708 0.81950 0.90775 0.88834 0.88057 0.91434 0.90950 0.90188 0.90552 0.92543 0.93253 0.92248 0.96419 0.95714 0.79891 0.94011 0.86026 0.87809 0.86362 0.84443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 10.47 71.24 0.75 -0.29 16 2 C 0.02 0.46 7.33 43.58 0.32 0.78 16 3 C -0.23 -5.07 10.59 22.40 0.24 -4.83 16 4 C 0.02 0.47 5.60 25.04 0.14 0.61 16 5 C -0.11 -2.15 1.30 -53.68 -0.07 -2.22 16 6 C 0.55 15.05 6.49 87.65 0.57 15.62 16 7 O -0.55 -20.66 12.12 -3.03 -0.04 -20.69 16 8 N -0.59 -13.70 2.98 -795.86 -2.37 -16.07 16 9 C 0.10 1.61 5.95 86.36 0.51 2.12 16 10 C -0.13 -1.55 6.08 30.67 0.19 -1.37 16 11 C -0.12 -1.69 5.89 30.62 0.18 -1.51 16 12 C -0.13 -2.91 4.87 30.53 0.15 -2.76 16 13 C 0.16 4.24 2.98 44.83 0.13 4.37 16 14 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 15 C -0.09 -3.47 3.24 30.59 0.10 -3.37 16 16 C 0.15 6.48 5.80 86.38 0.50 6.98 16 17 N -0.75 -42.16 5.60 -343.46 -1.92 -44.08 16 18 C -0.25 -14.74 9.99 84.03 0.84 -13.90 16 19 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 20 C -0.08 -4.90 5.50 84.86 0.47 -4.44 16 21 N -0.97 -63.31 13.06 21.65 0.28 -63.03 16 22 Si 0.98 47.93 29.55 68.60 2.03 49.96 16 23 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 24 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 25 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 26 C -0.13 -2.36 9.76 30.59 0.30 -2.06 16 27 C -0.12 -1.61 8.99 30.59 0.27 -1.33 16 28 O 0.10 2.06 10.97 71.65 0.79 2.85 16 29 N -0.38 -8.45 12.07 -49.56 -0.60 -9.05 16 30 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.16 3.79 8.06 -2.91 -0.02 3.76 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 1.27 5.12 -2.39 -0.01 1.25 16 36 H 0.10 0.75 8.14 -2.39 -0.02 0.74 16 37 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.08 1.81 6.91 -2.39 -0.02 1.80 16 41 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 42 H 0.05 2.08 7.14 -2.38 -0.02 2.07 16 43 H 0.06 2.60 6.33 -2.39 -0.02 2.59 16 44 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.03 1.05 6.90 -2.39 -0.02 1.03 16 46 H 0.37 22.74 7.67 -92.71 -0.71 22.03 16 47 H 0.25 15.71 8.31 -92.71 -0.77 14.94 16 48 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.10 2.23 8.01 -2.39 -0.02 2.21 16 50 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 51 H 0.14 1.21 8.00 -2.39 -0.02 1.19 16 Total: -1.00 -77.46 404.59 3.98 -73.49 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: 0.22 Total: 34.22 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 5.58 Total: -7.59 kcal Atomic # 7 Polarization: -127.62 SS G_CDS: -4.61 Total: -132.23 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.75 Total: -17.84 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal Total: -77.46 3.98 -73.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568391849.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.768 kcal (2) G-P(sol) polarization free energy of solvation -77.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds