Wall clock time and date at job start Wed Apr 1 2020 04:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.41387 * 126.80157 * 2 1 4 4 C 1.35456 * 103.98293 * 180.16398 * 3 2 1 5 5 C 1.50702 * 126.77331 * 179.90823 * 4 3 2 6 6 C 1.50702 * 115.54849 * 330.09659 * 5 4 3 7 7 O 1.21278 * 120.00297 * 101.32490 * 6 5 4 8 8 N 1.34780 * 119.99542 * 281.59250 * 6 5 4 9 9 C 1.46932 * 120.63180 * 354.47907 * 8 6 5 10 10 C 1.52760 * 109.00434 * 233.57985 * 9 8 6 11 11 C 1.53032 * 109.38529 * 305.58624 * 10 9 8 12 12 C 1.53041 * 109.54168 * 61.24181 * 11 10 9 13 13 C 1.46926 * 120.62925 * 174.75154 * 8 6 5 14 14 H 1.09008 * 109.58652 * 246.15798 * 13 8 6 15 15 C 1.52997 * 109.58730 * 6.58572 * 13 8 6 16 16 C 1.52997 * 109.47302 * 180.81728 * 15 13 8 17 17 N 1.46500 * 109.47371 * 174.82657 * 16 15 13 18 18 C 1.36936 * 119.99818 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00192 * 0.02562 * 18 17 16 20 20 C 1.38820 * 119.99820 * 180.02562 * 18 17 16 21 21 N 1.31616 * 119.99630 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00056 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47402 * 59.99761 * 22 20 18 24 24 H 1.48497 * 109.47260 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47029 * 299.99830 * 22 20 18 26 26 C 1.52996 * 117.51619 * 115.78757 * 5 4 3 27 27 C 1.52999 * 117.49905 * 184.42095 * 5 4 3 28 28 O 1.34033 * 106.44722 * 359.64651 * 4 3 2 29 29 N 1.20920 * 111.56991 * 0.23868 * 28 4 3 30 30 H 1.09000 * 109.47280 * 270.25539 * 1 2 3 31 31 H 1.08995 * 109.47017 * 30.25796 * 1 2 3 32 32 H 1.09008 * 109.46542 * 150.25518 * 1 2 3 33 33 H 1.08001 * 128.00368 * 0.07565 * 3 2 1 34 34 H 1.09000 * 109.58474 * 353.41041 * 9 8 6 35 35 H 1.08995 * 109.58568 * 113.84029 * 9 8 6 36 36 H 1.08997 * 109.56179 * 185.54868 * 10 9 8 37 37 H 1.09004 * 109.36296 * 65.50091 * 10 9 8 38 38 H 1.09002 * 109.46021 * 301.22367 * 11 10 9 39 39 H 1.09006 * 109.45216 * 181.25488 * 11 10 9 40 40 H 1.08995 * 109.49938 * 178.68508 * 12 11 10 41 41 H 1.09003 * 109.52215 * 58.60276 * 12 11 10 42 42 H 1.09005 * 109.47186 * 300.81423 * 15 13 8 43 43 H 1.08998 * 109.47419 * 60.81655 * 15 13 8 44 44 H 1.09001 * 109.47213 * 294.83109 * 16 15 13 45 45 H 1.09007 * 109.47027 * 54.82535 * 16 15 13 46 46 H 0.96997 * 119.99768 * 0.02562 * 17 16 15 47 47 H 0.97003 * 119.99598 * 180.02562 * 21 20 18 48 48 H 1.08998 * 117.50269 * 214.96554 * 26 5 4 49 49 H 1.09002 * 117.50288 * 359.97438 * 26 5 4 50 50 H 1.08995 * 117.49731 * 359.97438 * 27 5 4 51 51 H 1.08995 * 117.49829 * 144.97665 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1321 0.0000 4 6 3.6025 0.6068 -0.0038 5 6 4.9022 1.3696 -0.0074 6 6 4.8642 2.7152 -0.6848 7 8 4.7913 3.7270 -0.0200 8 7 4.9058 2.7940 -2.0296 9 6 5.1094 1.5882 -2.8443 10 6 6.2885 1.8186 -3.7878 11 6 6.0476 3.0930 -4.6000 12 6 5.9430 4.2912 -3.6536 13 6 4.7543 4.0881 -2.7087 14 1 3.8270 4.0938 -3.2817 15 6 4.7264 5.2118 -1.6708 16 6 4.5481 6.5561 -2.3793 17 7 4.3975 7.6179 -1.3812 18 6 4.2243 8.9155 -1.7830 19 1 4.1982 9.1561 -2.8355 20 6 4.0821 9.9218 -0.8373 21 7 4.1144 9.6286 0.4454 22 14 3.8450 11.6917 -1.3852 23 1 2.6122 11.7948 -2.2067 24 1 3.7198 12.5668 -0.1919 25 1 5.0152 12.1209 -2.1925 26 6 5.8142 1.2180 1.2117 27 6 6.1961 0.5602 -0.1159 28 8 3.4538 -0.7253 0.0022 29 7 2.2869 -1.0423 0.0043 30 1 -0.3634 0.0046 1.0276 31 1 -0.3633 0.8876 -0.5178 32 1 -0.3633 -0.8924 -0.5099 33 1 2.0709 2.1744 0.0011 34 1 5.3238 0.7400 -2.1941 35 1 4.2117 1.3860 -3.4284 36 1 6.3863 0.9693 -4.4639 37 1 7.2028 1.9266 -3.2040 38 1 5.1204 2.9941 -5.1644 39 1 6.8779 3.2464 -5.2895 40 1 5.7947 5.2016 -4.2343 41 1 6.8603 4.3765 -3.0711 42 1 3.8961 5.0507 -0.9831 43 1 5.6635 5.2159 -1.1143 44 1 5.4225 6.7598 -2.9974 45 1 3.6588 6.5201 -3.0085 46 1 4.4213 7.4019 -0.4359 47 1 4.0147 10.3317 1.1063 48 1 6.3868 2.0914 1.5236 49 1 5.4740 0.5667 2.0169 50 1 6.1072 -0.5240 -0.1843 51 1 7.0197 1.0008 -0.6777 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568391850.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:45 Heat of formation + Delta-G solvation = 76.672515 kcal Electronic energy + Delta-G solvation = -31856.392139 eV Core-core repulsion = 27760.870129 eV Total energy + Delta-G solvation = -4095.522010 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.17728 -40.93884 -38.15427 -36.90487 -35.08404 -34.99535 -32.93915 -32.76919 -31.74205 -30.60527 -28.94182 -27.92892 -25.93967 -24.42088 -23.99705 -23.47226 -23.04539 -22.24731 -21.37004 -20.65404 -20.18254 -18.88590 -17.82443 -17.80613 -17.01287 -16.55107 -16.17927 -15.51971 -15.11998 -14.82833 -14.65141 -14.58090 -14.27382 -13.94577 -13.65741 -13.62823 -13.49494 -13.24923 -13.20856 -13.16009 -12.94140 -12.68757 -12.62131 -12.11568 -11.96830 -11.67194 -11.47536 -11.42639 -11.35934 -11.13035 -10.92621 -10.89339 -10.80648 -10.65915 -10.44946 -10.37532 -10.22370 -9.98696 -9.59661 -9.43457 -8.91950 -8.77539 -8.54642 -6.79911 -5.65823 -2.94072 1.13693 1.97942 2.14568 2.66573 3.04772 3.31679 3.49331 3.52980 3.54731 3.93551 3.94579 4.12646 4.38162 4.47607 4.59154 4.66245 4.68695 4.74828 4.84254 4.97152 4.99013 5.15697 5.17752 5.21050 5.21490 5.27044 5.28439 5.36072 5.48170 5.51642 5.54106 5.57745 5.60569 5.65550 5.71960 5.74439 5.77317 5.88954 5.93052 5.96716 6.10095 6.21657 6.35367 6.37281 6.54807 6.64465 7.05888 7.13963 7.32736 7.77228 8.00522 8.12232 8.53184 9.63615 10.25374 10.60212 11.57015 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011169 B = 0.002897 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.306472 B = 9664.376009 C =10791.165651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.021 3.979 3 C -0.213 4.213 4 C 0.013 3.987 5 C -0.090 4.090 6 C 0.554 3.446 7 O -0.496 6.496 8 N -0.598 5.598 9 C 0.104 3.896 10 C -0.134 4.134 11 C -0.121 4.121 12 C -0.133 4.133 13 C 0.152 3.848 14 H 0.073 0.927 15 C -0.114 4.114 16 C 0.148 3.852 17 N -0.731 5.731 18 C -0.238 4.238 19 H 0.068 0.932 20 C -0.016 4.016 21 N -0.932 5.932 22 Si 0.906 3.094 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.287 1.287 26 C -0.124 4.124 27 C -0.155 4.155 28 O 0.100 5.900 29 N -0.366 5.366 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.173 0.827 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.015 0.985 45 H 0.012 0.988 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.117 0.883 49 H 0.109 0.891 50 H 0.113 0.887 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.879 -26.034 -5.576 26.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.137 4.137 3 C -0.234 4.234 4 C -0.051 4.051 5 C -0.095 4.095 6 C 0.339 3.661 7 O -0.369 6.369 8 N -0.332 5.332 9 C -0.019 4.019 10 C -0.172 4.172 11 C -0.158 4.158 12 C -0.171 4.171 13 C 0.050 3.950 14 H 0.091 0.909 15 C -0.151 4.151 16 C 0.020 3.980 17 N -0.375 5.375 18 C -0.369 4.369 19 H 0.086 0.914 20 C -0.212 4.212 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.214 1.214 26 C -0.162 4.162 27 C -0.192 4.192 28 O 0.034 5.966 29 N -0.071 5.071 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.190 0.810 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.033 0.967 45 H 0.029 0.971 46 H 0.219 0.781 47 H 0.064 0.936 48 H 0.135 0.865 49 H 0.127 0.873 50 H 0.132 0.868 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.579 -26.646 -5.308 27.215 hybrid contribution -0.301 1.719 -0.089 1.747 sum 1.278 -24.927 -5.397 25.536 Atomic orbital electron populations 1.20194 0.85728 1.03915 1.03578 1.23593 0.99138 0.88569 1.02392 1.22440 0.90851 1.01488 1.08646 1.22755 0.95450 0.83508 1.03340 1.19479 0.87399 0.95160 1.07468 1.18934 0.77207 0.87893 0.82049 1.90921 1.47306 1.34293 1.64411 1.48061 1.71537 1.08755 1.04834 1.21725 0.98545 0.87420 0.94231 1.21840 0.98340 0.98666 0.98365 1.21543 1.02019 0.94455 0.97807 1.22063 0.98820 0.98567 0.97669 1.21398 0.97893 0.81842 0.93914 0.90875 1.22248 1.04646 0.91997 0.96249 1.20789 0.96952 0.87839 0.92417 1.42341 1.87650 1.02736 1.04757 1.19196 1.41451 0.84140 0.92154 0.91390 1.24745 1.03208 0.97934 0.95268 1.69672 1.57303 1.31937 0.99194 0.86280 0.77897 0.85043 0.77043 1.21350 1.21718 1.21360 1.23212 0.98640 1.03418 0.90922 1.23277 0.94847 1.00068 1.00978 1.84776 1.21827 1.22023 1.68013 1.73839 0.89101 1.23768 1.20417 0.90003 0.89743 0.90533 0.80989 0.89485 0.91565 0.90778 0.91415 0.91816 0.91633 0.89869 0.91328 0.89601 0.90905 0.96676 0.97056 0.78082 0.93555 0.86458 0.87289 0.86842 0.87058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.47 36.01 0.38 -0.23 16 2 C 0.02 0.24 7.33 -82.10 -0.60 -0.36 16 3 C -0.21 -2.50 10.59 -39.38 -0.42 -2.91 16 4 C 0.01 0.15 6.67 -35.30 -0.24 -0.09 16 5 C -0.09 -0.94 1.30 -156.81 -0.20 -1.15 16 6 C 0.55 7.41 6.41 -10.98 -0.07 7.34 16 7 O -0.50 -8.72 12.39 5.56 0.07 -8.65 16 8 N -0.60 -7.05 2.98 -165.47 -0.49 -7.54 16 9 C 0.10 0.89 6.18 -3.93 -0.02 0.87 16 10 C -0.13 -1.00 6.06 -26.84 -0.16 -1.16 16 11 C -0.12 -1.05 5.88 -26.69 -0.16 -1.20 16 12 C -0.13 -1.55 4.89 -26.61 -0.13 -1.68 16 13 C 0.15 2.05 3.00 -67.60 -0.20 1.85 16 14 H 0.07 0.97 8.14 -51.92 -0.42 0.54 16 15 C -0.11 -2.06 3.25 -26.73 -0.09 -2.15 16 16 C 0.15 3.16 5.80 -4.04 -0.02 3.13 16 17 N -0.73 -19.88 5.60 -59.90 -0.34 -20.22 16 18 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 20 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 21 N -0.93 -29.47 13.06 55.49 0.72 -28.74 16 22 Si 0.91 23.09 29.55 -169.99 -5.02 18.07 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 C -0.12 -1.12 9.85 -26.73 -0.26 -1.38 16 27 C -0.15 -1.14 7.95 -26.73 -0.21 -1.35 16 28 O 0.10 1.12 10.97 17.19 0.19 1.31 16 29 N -0.37 -4.45 12.07 33.43 0.40 -4.04 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.17 2.07 8.06 -52.49 -0.42 1.65 16 34 H 0.09 0.66 4.85 -51.93 -0.25 0.41 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.08 1.02 6.91 -51.93 -0.36 0.66 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.09 1.75 6.37 -51.93 -0.33 1.42 16 43 H 0.07 1.44 7.10 -51.93 -0.37 1.07 16 44 H 0.02 0.32 6.89 -51.93 -0.36 -0.04 16 45 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 46 H 0.39 11.23 7.67 -40.82 -0.31 10.91 16 47 H 0.25 7.76 8.31 -40.82 -0.34 7.42 16 48 H 0.12 1.14 8.14 -51.93 -0.42 0.71 16 49 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.11 0.67 8.00 -51.93 -0.42 0.25 16 51 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 405.04 15.07 6.10 6.10 Total: -1.00 -34.74 405.04 -9.31 -44.05 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -8.28 Total: 7.85 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -2.66 Total: -8.18 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: 0.30 Total: -60.54 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: 0.26 Total: -7.34 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.74 -9.31 -44.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568391850.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.720 kcal (2) G-P(sol) polarization free energy of solvation -34.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds