Wall clock time and date at job start Wed Apr 1 2020 04:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.41387 * 126.80157 * 2 1 4 4 C 1.35456 * 103.98293 * 180.16398 * 3 2 1 5 5 C 1.50702 * 126.77331 * 179.90823 * 4 3 2 6 6 C 1.50702 * 115.54849 * 330.09659 * 5 4 3 7 7 O 1.21278 * 120.00297 * 101.32490 * 6 5 4 8 8 N 1.34780 * 119.99542 * 281.59250 * 6 5 4 9 9 C 1.46932 * 120.63180 * 354.47907 * 8 6 5 10 10 C 1.52760 * 109.00434 * 233.57985 * 9 8 6 11 11 C 1.53032 * 109.38529 * 305.58624 * 10 9 8 12 12 C 1.53041 * 109.54168 * 61.24181 * 11 10 9 13 13 C 1.46926 * 120.62925 * 174.75154 * 8 6 5 14 14 H 1.09008 * 109.58652 * 246.15798 * 13 8 6 15 15 C 1.52997 * 109.58730 * 6.58572 * 13 8 6 16 16 C 1.52997 * 109.47302 * 180.81728 * 15 13 8 17 17 N 1.46500 * 109.47371 * 174.82657 * 16 15 13 18 18 C 1.36936 * 119.99818 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00192 * 0.02562 * 18 17 16 20 20 C 1.38820 * 119.99820 * 180.02562 * 18 17 16 21 21 N 1.31616 * 119.99630 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00056 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47402 * 59.99761 * 22 20 18 24 24 H 1.48497 * 109.47260 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47029 * 299.99830 * 22 20 18 26 26 C 1.52996 * 117.51619 * 115.78757 * 5 4 3 27 27 C 1.52999 * 117.49905 * 184.42095 * 5 4 3 28 28 O 1.34033 * 106.44722 * 359.64651 * 4 3 2 29 29 N 1.20920 * 111.56991 * 0.23868 * 28 4 3 30 30 H 1.09000 * 109.47280 * 270.25539 * 1 2 3 31 31 H 1.08995 * 109.47017 * 30.25796 * 1 2 3 32 32 H 1.09008 * 109.46542 * 150.25518 * 1 2 3 33 33 H 1.08001 * 128.00368 * 0.07565 * 3 2 1 34 34 H 1.09000 * 109.58474 * 353.41041 * 9 8 6 35 35 H 1.08995 * 109.58568 * 113.84029 * 9 8 6 36 36 H 1.08997 * 109.56179 * 185.54868 * 10 9 8 37 37 H 1.09004 * 109.36296 * 65.50091 * 10 9 8 38 38 H 1.09002 * 109.46021 * 301.22367 * 11 10 9 39 39 H 1.09006 * 109.45216 * 181.25488 * 11 10 9 40 40 H 1.08995 * 109.49938 * 178.68508 * 12 11 10 41 41 H 1.09003 * 109.52215 * 58.60276 * 12 11 10 42 42 H 1.09005 * 109.47186 * 300.81423 * 15 13 8 43 43 H 1.08998 * 109.47419 * 60.81655 * 15 13 8 44 44 H 1.09001 * 109.47213 * 294.83109 * 16 15 13 45 45 H 1.09007 * 109.47027 * 54.82535 * 16 15 13 46 46 H 0.96997 * 119.99768 * 0.02562 * 17 16 15 47 47 H 0.97003 * 119.99598 * 180.02562 * 21 20 18 48 48 H 1.08998 * 117.50269 * 214.96554 * 26 5 4 49 49 H 1.09002 * 117.50288 * 359.97438 * 26 5 4 50 50 H 1.08995 * 117.49731 * 359.97438 * 27 5 4 51 51 H 1.08995 * 117.49829 * 144.97665 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1321 0.0000 4 6 3.6025 0.6068 -0.0038 5 6 4.9022 1.3696 -0.0074 6 6 4.8642 2.7152 -0.6848 7 8 4.7913 3.7270 -0.0200 8 7 4.9058 2.7940 -2.0296 9 6 5.1094 1.5882 -2.8443 10 6 6.2885 1.8186 -3.7878 11 6 6.0476 3.0930 -4.6000 12 6 5.9430 4.2912 -3.6536 13 6 4.7543 4.0881 -2.7087 14 1 3.8270 4.0938 -3.2817 15 6 4.7264 5.2118 -1.6708 16 6 4.5481 6.5561 -2.3793 17 7 4.3975 7.6179 -1.3812 18 6 4.2243 8.9155 -1.7830 19 1 4.1982 9.1561 -2.8355 20 6 4.0821 9.9218 -0.8373 21 7 4.1144 9.6286 0.4454 22 14 3.8450 11.6917 -1.3852 23 1 2.6122 11.7948 -2.2067 24 1 3.7198 12.5668 -0.1919 25 1 5.0152 12.1209 -2.1925 26 6 5.8142 1.2180 1.2117 27 6 6.1961 0.5602 -0.1159 28 8 3.4538 -0.7253 0.0022 29 7 2.2869 -1.0423 0.0043 30 1 -0.3634 0.0046 1.0276 31 1 -0.3633 0.8876 -0.5178 32 1 -0.3633 -0.8924 -0.5099 33 1 2.0709 2.1744 0.0011 34 1 5.3238 0.7400 -2.1941 35 1 4.2117 1.3860 -3.4284 36 1 6.3863 0.9693 -4.4639 37 1 7.2028 1.9266 -3.2040 38 1 5.1204 2.9941 -5.1644 39 1 6.8779 3.2464 -5.2895 40 1 5.7947 5.2016 -4.2343 41 1 6.8603 4.3765 -3.0711 42 1 3.8961 5.0507 -0.9831 43 1 5.6635 5.2159 -1.1143 44 1 5.4225 6.7598 -2.9974 45 1 3.6588 6.5201 -3.0085 46 1 4.4213 7.4019 -0.4359 47 1 4.0147 10.3317 1.1063 48 1 6.3868 2.0914 1.5236 49 1 5.4740 0.5667 2.0169 50 1 6.1072 -0.5240 -0.1843 51 1 7.0197 1.0008 -0.6777 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568391850.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:44 Heat of formation + Delta-G solvation = 55.602450 kcal Electronic energy + Delta-G solvation = -31857.305805 eV Core-core repulsion = 27760.870129 eV Total energy + Delta-G solvation = -4096.435677 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -46.05236 -41.94434 -39.06557 -37.87872 -36.87061 -35.84001 -34.45486 -33.81299 -32.59478 -32.39346 -29.66540 -29.33829 -27.14974 -25.63521 -25.24574 -24.39231 -24.03385 -23.46314 -22.25683 -22.09417 -21.03879 -19.79251 -19.22309 -18.70665 -18.60668 -17.50316 -17.28085 -16.66229 -16.47669 -16.04802 -15.75292 -15.57567 -15.44035 -15.12260 -15.00051 -14.69613 -14.48709 -14.36497 -14.26321 -14.22712 -13.97723 -13.83258 -13.44159 -13.34974 -12.93856 -12.78669 -12.75273 -12.61883 -12.48471 -12.33579 -12.20562 -12.15018 -11.97837 -11.90160 -11.78485 -11.72794 -11.50369 -11.34603 -11.04594 -10.92106 -10.30986 -10.13346 -9.59047 -9.01500 -7.94811 -5.25516 0.26778 1.11156 1.17578 1.44880 1.49852 1.56055 1.71273 2.13551 2.54027 2.55965 3.12710 3.16596 3.28740 3.37383 3.63050 3.68104 3.78203 3.84403 3.91261 4.01711 4.09479 4.12795 4.17953 4.24814 4.41634 4.45710 4.49102 4.53841 4.57569 4.61753 4.62836 4.70262 4.73433 4.76516 4.79921 4.80909 4.87048 4.91492 4.97207 5.06631 5.09761 5.15995 5.17380 5.23806 5.38308 5.38803 5.48239 5.49851 5.66813 6.25966 6.34012 7.09040 7.14271 7.30901 8.08092 8.32117 9.29077 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011169 B = 0.002897 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.306472 B = 9664.376009 C =10791.165651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.022 3.978 3 C -0.235 4.235 4 C 0.024 3.976 5 C -0.107 4.107 6 C 0.551 3.449 7 O -0.551 6.551 8 N -0.594 5.594 9 C 0.099 3.901 10 C -0.129 4.129 11 C -0.116 4.116 12 C -0.129 4.129 13 C 0.157 3.843 14 H 0.080 0.920 15 C -0.091 4.091 16 C 0.148 3.852 17 N -0.748 5.748 18 C -0.250 4.250 19 H 0.078 0.922 20 C -0.080 4.080 21 N -0.973 5.973 22 Si 0.980 3.020 23 H -0.275 1.275 24 H -0.294 1.294 25 H -0.275 1.275 26 C -0.131 4.131 27 C -0.122 4.122 28 O 0.104 5.896 29 N -0.383 5.383 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.161 0.839 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.049 0.951 44 H 0.025 0.975 45 H 0.017 0.983 46 H 0.370 0.630 47 H 0.251 0.749 48 H 0.104 0.896 49 H 0.121 0.879 50 H 0.138 0.862 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.425 -27.996 -7.855 29.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.136 4.136 3 C -0.257 4.257 4 C -0.040 4.040 5 C -0.111 4.111 6 C 0.337 3.663 7 O -0.428 6.428 8 N -0.326 5.326 9 C -0.023 4.023 10 C -0.166 4.166 11 C -0.153 4.153 12 C -0.167 4.167 13 C 0.053 3.947 14 H 0.098 0.902 15 C -0.129 4.129 16 C 0.022 3.978 17 N -0.391 5.391 18 C -0.381 4.381 19 H 0.096 0.904 20 C -0.272 4.272 21 N -0.623 5.623 22 Si 0.808 3.192 23 H -0.201 1.201 24 H -0.221 1.221 25 H -0.201 1.201 26 C -0.168 4.168 27 C -0.159 4.159 28 O 0.039 5.961 29 N -0.089 5.089 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.178 0.822 34 H 0.119 0.881 35 H 0.092 0.908 36 H 0.122 0.878 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.043 0.957 45 H 0.035 0.965 46 H 0.201 0.799 47 H 0.060 0.940 48 H 0.123 0.877 49 H 0.139 0.861 50 H 0.156 0.844 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.139 -28.666 -7.665 29.751 hybrid contribution -0.471 2.286 0.610 2.413 sum 1.668 -26.380 -7.056 27.358 Atomic orbital electron populations 1.20335 0.83789 1.04866 1.04520 1.24006 1.00440 0.87904 1.01293 1.22464 0.91768 1.01306 1.10114 1.22764 0.95378 0.83559 1.02298 1.19280 0.88558 0.94288 1.08989 1.19400 0.76098 0.88451 0.82313 1.90902 1.49882 1.36485 1.65574 1.48139 1.70533 1.09164 1.04737 1.22015 0.99691 0.86146 0.94400 1.21847 0.97472 0.99013 0.98310 1.21530 1.03092 0.93364 0.97340 1.22006 0.97043 1.00109 0.97572 1.21218 0.99356 0.81303 0.92779 0.90239 1.21921 1.02209 0.92318 0.96417 1.20967 0.97224 0.88027 0.91630 1.42623 1.87800 1.03626 1.05007 1.19669 1.40541 0.85222 0.92710 0.90373 1.25701 1.03539 1.02666 0.95297 1.69867 1.58864 1.33133 1.00462 0.85115 0.78383 0.79108 0.76564 1.20095 1.22054 1.20072 1.23288 0.98176 1.03569 0.91779 1.23472 0.92562 1.01002 0.98855 1.84755 1.21636 1.21672 1.68007 1.73819 0.89435 1.24141 1.21534 0.88997 0.88859 0.89492 0.82167 0.88075 0.90765 0.87800 0.91355 0.91019 0.90191 0.90678 0.92484 0.92421 0.93186 0.95696 0.96474 0.79901 0.93997 0.87742 0.86116 0.84384 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.15 10.47 71.24 0.75 -0.41 16 2 C 0.02 0.47 7.33 43.58 0.32 0.79 16 3 C -0.24 -5.58 10.59 22.40 0.24 -5.34 16 4 C 0.02 0.52 6.67 25.04 0.17 0.68 16 5 C -0.11 -2.16 1.30 -53.67 -0.07 -2.23 16 6 C 0.55 15.09 6.41 87.66 0.56 15.65 16 7 O -0.55 -20.85 12.39 -3.02 -0.04 -20.89 16 8 N -0.59 -13.68 2.98 -795.83 -2.37 -16.05 16 9 C 0.10 1.44 6.18 86.22 0.53 1.97 16 10 C -0.13 -1.45 6.06 30.53 0.19 -1.26 16 11 C -0.12 -1.67 5.88 30.62 0.18 -1.49 16 12 C -0.13 -2.89 4.89 30.67 0.15 -2.74 16 13 C 0.16 4.24 3.00 44.97 0.14 4.38 16 14 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 15 C -0.09 -3.47 3.25 30.59 0.10 -3.37 16 16 C 0.15 6.51 5.80 86.38 0.50 7.02 16 17 N -0.75 -42.29 5.60 -343.44 -1.92 -44.22 16 18 C -0.25 -14.91 9.99 84.04 0.84 -14.07 16 19 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 20 C -0.08 -4.87 5.50 84.86 0.47 -4.40 16 21 N -0.97 -63.37 13.06 21.65 0.28 -63.09 16 22 Si 0.98 47.96 29.55 68.60 2.03 49.98 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 25 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 26 C -0.13 -2.26 9.85 30.60 0.30 -1.96 16 27 C -0.12 -1.49 7.95 30.60 0.24 -1.25 16 28 O 0.10 2.19 10.97 71.70 0.79 2.98 16 29 N -0.38 -8.85 12.07 -49.55 -0.60 -9.44 16 30 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.16 4.14 8.06 -2.91 -0.02 4.12 16 34 H 0.10 1.21 4.85 -2.39 -0.01 1.20 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.07 1.79 6.91 -2.39 -0.02 1.77 16 41 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.06 2.54 6.37 -2.38 -0.02 2.53 16 43 H 0.05 2.12 7.10 -2.39 -0.02 2.11 16 44 H 0.03 1.06 6.89 -2.39 -0.02 1.04 16 45 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.37 22.80 7.67 -92.71 -0.71 22.09 16 47 H 0.25 15.76 8.31 -92.71 -0.77 14.99 16 48 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 49 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 50 H 0.14 1.08 8.00 -2.39 -0.02 1.06 16 51 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -78.41 405.04 3.99 -74.43 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: 0.23 Total: 34.34 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: 5.60 Total: -8.03 kcal Atomic # 7 Polarization: -128.20 SS G_CDS: -4.61 Total: -132.81 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: 0.75 Total: -17.91 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.98 kcal Total: -78.41 3.99 -74.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568391850.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.029 kcal (2) G-P(sol) polarization free energy of solvation -78.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds